BAC Information

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BAC

Clone NameB6Ng01-331N12
Chromosome4 (Build37)
Map Location 96,769,762 - 96,770,877
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331N12.bB6Ng01-331N12.g
ACCGA118108GA118109
length7141,121
definitionB6Ng01-331N12.b B6Ng01-331N12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataagattaaaacttccagccaaatggatggacctggagggcat
catcctgagtgaggtaacacattcacaaaggaactcacacaatatgtact
cactgataagtggatattagccccaaacctaggatacccaagatataaga
tacaatttgctaaacacatgaaactcaagaagaatgaagaatgaagtgtg
gacactatgccgctccttagaattgggaacaaaacacccatggaaggagt
tacagagacaaagtttggagctgagatgaaaggatggaccatgtagagac
tgccatatccagggatccaccccataatcagcatccaaacgctgacacca
ttgcatacactagcaagattttatcgaaaggacccagatgtagctgtctc
ttgtgagactatgccggggcctagcaaacacagaagtggatgctcacagt
cagctaatggatggatcacagggctcccaatggaggagctagagaaagaa
cccaaggagctaaagggatctgcaaccctataggtggaacaacattatga
actaaccagtaccccggagctcttgactctagctgcatatgtatcaaaag
atggcctagtcagtcatcactggaaagagaggcccattggacacgcaaac
tttatatgccccagtacaggggaacgccagggccaaaaagggggagtggg
tgggttaggggagt

gaattcagtattgaaagtgagtatggagaatgttagacctcctgtgaagt
tacaacagggactccttctcattcccaccatgattggtcttgggcaacta
aagcagactttttcttttatggtcttgcagatttgtgttttgaataagac
agaggatctaggaaaatgtgtaatctaataaataagtaccaagatgattg
ctcagtaacaccaagcacaaaacaagagagtagtttggctattcccttcc
cttctgctcttcagttgtgccatttatcttagtcacttgtttacttccgt
gaagagaaaccaaacgtcttacaaaagaaagcgttcagttggtggcttgc
ttacagtttcagatgtctagtctattattgacatggcagggagcatggtg
gcattaaagcaggtgctggggaagtagctgaaagctgcatcatgatttgt
aagcaaagagtgagtctgtgcttgcactgagtttttgcaacttcaaatca
cacctccacttcctccaaccaggccacaccacttaatcctctaaaacttc
aaatagtgacactccgtggtgctaagcatttaaatacatgagcctctggg
aggcgctcttattcaaaccaccacatcatccatcataatatgatcaaatc
cccaccactggctttctccccctatagaactggaaaaccttttcaagcaa
aagaagaacagacatcatggttgtaaggatacttactcacttctttcagg
gggctatgtgctgagactctccaagaatcaccaaaatataagccttcttc
ctacagatgctgctcatctctactatctgttgacaaagctgcccttccca
agactattccctttcccagtatatccagtgagtcattcccatctacaatg
aagcaaaggaccttcaaggttgtcatcaacaacctgagcttctccttgaa
ctccatatggcttttctactatttctgcaaagatatggatcctttaagac
catcttgtacctatgctctgtctccgagcctgtttactgaggaacccagt
ttatatccatgtagacttcattcttcccaccataattatttttaaaacct
gtgatatttgggagaacaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_96769762_96770877
seq2: B6Ng01-331N12.g_70_1190 (reverse)

seq1  TATTATTCTCTCCAAATATCACAG--TTTAAAA--TATTATGGTGGGAAG  46
      |||| ||||| |||||||||||||  |||||||   ||||||||||||||
seq2  TATTGTTCTC-CCAAATATCACAGGTTTTAAAAATAATTATGGTGGGAAG  49

seq1  AATGAAGTCTACAT-GATATAAACTGGGTTCCTCAGTAAACAGGCTCGGA  95
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATGAAGTCTACATGGATATAAACTGGGTTCCTCAGTAAACAGGCTCGGA  99

seq1  GACAGAGCATAGGTACAAGATGGTCTTAAAGGATCCATATCTTTGCAGAA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCATAGGTACAAGATGGTCTTAAAGGATCCATATCTTTGCAGAA  149

seq1  ATAGTAG-AAAGCCATATGGAGTTCAAGGAGAAGCTCAGGTTGTTGATGA  194
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGAAAAGCCATATGGAGTTCAAGGAGAAGCTCAGGTTGTTGATGA  199

seq1  CAACCTTGAAGGTCCTTTGCTTCATTGTAGATGGGAATGACTCACTGGAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGAAGGTCCTTTGCTTCATTGTAGATGGGAATGACTCACTGGAT  249

seq1  ATACTGGGAAAGGGAATAGTCTTGGGAAGGGCAGCTTTGTCAACAGATAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGGAAAGGGAATAGTCTTGGGAAGGGCAGCTTTGTCAACAGATAG  299

seq1  TAGAGATGAGCAGCATCTGTAGGAAGAAGGCTTATATTTTGGTGATTCTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGAGCAGCATCTGTAGGAAGAAGGCTTATATTTTGGTGATTCTT  349

seq1  GGAGAGTCTCAGCACATAGCCCCCTGAAAGAAGTGAGTAAGTATCCTTAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTCTCAGCACATAGCCCCCTGAAAGAAGTGAGTAAGTATCCTTAC  399

seq1  AACCATGATGTCTGTTCTTCTTTTGCTTGAAAAGGTTTTCCAGTTCTATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGATGTCTGTTCTTCTTTTGCTTGAAAAGGTTTTCCAGTTCTATA  449

seq1  GGGGGAGAAAGCCAGTGGTGGGGATTTGATCATATTATGATGGATGATGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGAAAGCCAGTGGTGGGGATTTGATCATATTATGATGGATGATGT  499

seq1  GGTGGTTTGAATAAGAGCGCCTCCCAGAGGCTCATGTATTTAAATGCTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTGAATAAGAGCGCCTCCCAGAGGCTCATGTATTTAAATGCTTA  549

seq1  GCACCACGGAGTGTCACTATTTGAAGTTTTAGAGGATTAAGTGGTGTGGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACGGAGTGTCACTATTTGAAGTTTTAGAGGATTAAGTGGTGTGGC  599

seq1  CTGGTTGGAGGAAGTGGAGGTGTGATTTGAAGTTGCAAAAACTCAGTGCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGGAGGAAGTGGAGGTGTGATTTGAAGTTGCAAAAACTCAGTGCA  649

seq1  AGCACAGACTCACTCTTTGCTTACAAATCATGATGCAGCTTTCAGCTACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGACTCACTCTTTGCTTACAAATCATGATGCAGCTTTCAGCTACT  699

seq1  TCCCCAGCACCTGCTTTAATGCCACCATGCTCCCTGCCATGTCAATAATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCACCTGCTTTAATGCCACCATGCTCCCTGCCATGTCAATAATA  749

seq1  GACTAGACATCTGAAACTGTAAGCAAGCCACCAACTGAACGCTTTCTTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGACATCTGAAACTGTAAGCAAGCCACCAACTGAACGCTTTCTTTT  799

seq1  GTAAGACGTTTGGTTTCTCTTCACGGAAGTAAACAAGTGACTAAGATAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACGTTTGGTTTCTCTTCACGGAAGTAAACAAGTGACTAAGATAAA  849

seq1  TGGCACAACTGAAGAGCAGAAGGGAAGGGAATAGCCAAACTACTCTCTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAACTGAAGAGCAGAAGGGAAGGGAATAGCCAAACTACTCTCTTG  899

seq1  TTTTGTGCTTGGTGTTACTGAGCAATCATCTTGGTACTTATTTATTAGAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGCTTGGTGTTACTGAGCAATCATCTTGGTACTTATTTATTAGAT  949

seq1  TACACATTTTCCTAGATCCTCTGTCTTATTCAAAACACAAATCTGCAAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTTTCCTAGATCCTCTGTCTTATTCAAAACACAAATCTGCAAGA  999

seq1  CCATAAAAGAAAAAGTCTGCTTTAGTTGCCCAAGACCAATCATGGTGGGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAGAAAAAGTCTGCTTTAGTTGCCCAAGACCAATCATGGTGGGA  1049

seq1  ATGAGAAGGAGTCCCTGTTGTAACTTCACAGGAGGTCTAACATTCTCCAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGGAGTCCCTGTTGTAACTTCACAGGAGGTCTAACATTCTCCAT  1099

seq1  ACTCACTTTCAATACTGAATTC  1116
      ||||||||||||||||||||||
seq2  ACTCACTTTCAATACTGAATTC  1121


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