BAC Information

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BAC

Clone NameB6Ng01-332E04
Chromosome4 (Build37)
Map Location 145,683,334 - 145,730,597
singlet/doubletdoublet
Overlap geneLOC433790, LOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332E04.bB6Ng01-332E04.g
ACCGA118409GA118410
length9691,177
definitionB6Ng01-332E04.b B6Ng01-332E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,683,334 - 145,684,124)(145,729,398 - 145,730,597)
sequence
gaattcattgattgattggttgattcttcgtttttttttttttgtttttt
tttttaaagatttatttattattatatgtaagtacactgtagcagctgtc
tgaagacagctgctatcgggtgctcttacccactgagccatctcaccagc
cccgattcttcgtttttattttgtcttttccttaaacttatctaatcatg
catgaagcccaccctccccagcaggaaccactcctccaactctgttgcag
gctgccttccacacaacttctctggacctactctgcacagcttccccaca
atgttgctgccagactagaccagagctggatgtactaggacactgcacct
gggttctgagagttttacagagtcagactgaagagagaacatgctaggaa
caggtaaagacagaatgagcaggagaaagagaaggagccagaagatgaga
aaagatttctacagttaatttaaggccaagtggaacaattcagtgtctga
aagaagaactcagctcggagaggagtttgagctggaaaaaccgagttgaa
cgagctagttaagcattgagaaggaataagaaagggggagcttgccaggc
ttggtggcacacgcctttaatcccagcacttgggaggcagaggcagatgg
atttctgagttcgaggccagcctggtctacagagtgagttccaggacagc
cagggatacactgagaaaccctgtcccgaaaaaccaaaaaaaaaaaaaaa
aaaaaaaaagaagaaaaaagaagaaagggggggggggagcttattcagca
gcaaatttcagaggctgaaaacacactaggcctagataatactgtatgga
gactagaagcttacatgactaggcctaggttaatagatgtaggcaggaat
cctcccaaattacagtgacagtaggagaatgaaacttacttatacagccc
tgtggtaaaagtagaccac
gaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaatgc
tttactgaaaaaggccatcagagaattcatacaggagagataccttacaa
atagtttgtatgtgacaaatacaatacaatgtcagtctgagaaatcatca
gtttttaatacagtagagaatatttataaatgaagtgaacgagacaatcc
tttaccaagatatatcatcttaaaaatcattagagaatacttacagaaga
gaaacttttcaattatatcaaaggtatgaatcctttactcttggcctatt
tcctagaatgttaacagtgaatacttacaggatacaaacttaactcatgc
attgtatcaagaaatatctttgacttcatttcaggtcaaagagaatatct
aataactttttaggggaaagtatttctgttggggaaagtgtggcctgtgt
tttattcacgttctattcttgacaacaattgaggctccacactagagaat
tagtatgattatgaaaatcatgtgaaaactttcatgcaatgttcaaatct
taaataatgtcaactattttttgcttgaagaaactctgaaaatgtaaaaa
tgtagaaagcttttcatgatacctttttacttgttcacccttaaatgtta
caagatgaagacaagttgggaagtgaggagatattattgtgtaacacatt
cattgagacagaaataatccatttcaaaaggaaactatttaaggtcttta
atgcagtcctcaaaatatctaataaaactggtaacattctgtatatttaa
ttcaaatgagccaattgagaaaaattatacttaaaagaatatctggcaaa
ctgagccacccagacagcatattctttatcctataaatatgcttacagat
gtgaagtgtgcttcgagtattcagtaataataattcttctcaaatgcttg
gttcacattataggataacaactgatcattatttcccatttattgacgaa
agtcctataggtctctgaaaatgctgacgtgatacatatacaagacattg
tgtgtctgtctgtgtgctaatactccacctctacgtagaataaatagatt
tcattctttttctaaatcattctacgatcttatatttgcacatctcagaa
atacatctgagaaacaacagcttttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145683334_145684124
seq2: B6Ng01-332E04.b_42_823

seq1  GAATTCATTGATTGATTGGTTGATTCTTCGTTTTTTTTTTTTTGTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGATTGATTGGTTGATTCTTCGTTTTTTTTTTTTTGTTTTTT  50

seq1  TTTTTAAAGATTTATTTATTATTATATGTAAGTACACTGTAGCAGCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGATTTATTTATTATTATATGTAAGTACACTGTAGCAGCTGTC  100

seq1  TGAAGACAGCTGCTATCGGGTGCTCTTACCCACTGAGCCATCTCACCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCTGCTATCGGGTGCTCTTACCCACTGAGCCATCTCACCAGC  150

seq1  CCCGATTCTTCGTTTTTATTTTGTCTTTTCCTTAAACTTATCTAATCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATTCTTCGTTTTTATTTTGTCTTTTCCTTAAACTTATCTAATCATG  200

seq1  CATGAAGCCCACCCTCCCCAGCAGGAACCACTCCTCCAACTCTGTTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGCCCACCCTCCCCAGCAGGAACCACTCCTCCAACTCTGTTGCAG  250

seq1  GCTGCCTTCCACACAACTTCTCTGGACCTACTCTGCACAGCTTCCCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTCCACACAACTTCTCTGGACCTACTCTGCACAGCTTCCCCACA  300

seq1  ATGTTGCTGCCAGACTAGACCAGAGCTGGATGTACTAGGACACTGCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTGCCAGACTAGACCAGAGCTGGATGTACTAGGACACTGCACCT  350

seq1  GGGTTCTGAGAGTTTTACAGAGTCAGACTGAAGAGAGAACATGCTAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGAGAGTTTTACAGAGTCAGACTGAAGAGAGAACATGCTAGGAA  400

seq1  CAGGTAAAGACAGAATGAGCAGGAGAAAGAGAAGGAGCCAGAAGATGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAGACAGAATGAGCAGGAGAAAGAGAAGGAGCCAGAAGATGAGA  450

seq1  AAAGATTTCTACAGTTAATTTAAGGCCAAGTGGAACAATTCAGTGTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTCTACAGTTAATTTAAGGCCAAGTGGAACAATTCAGTGTCTGA  500

seq1  AAGAAGAACTCAGCTCGGAGAGGAGTTTGAGCTGGAAAAACCGAGTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAACTCAGCTCGGAGAGGAGTTTGAGCTGGAAAAACCGAGTTGAA  550

seq1  CGAGCTAGTTAAGCATTGAGAAGGAATAAGAAAGGGGGAGCTTGCCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTAGTTAAGCATTGAGAAGGAATAAGAAAGGGGGAGCTTGCCAGGC  600

seq1  TTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGATGG  650

seq1  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  700

seq1  CAGGGATACACTGAGAAACCCTGTCCCGAAAAACCAAAAAAAAAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATACACTGAGAAACCCTGTCCCGAAAAACCAAAAAAAAAAAAAAA  750

seq1  AAAAAAAAAAAAAAAGAAAGAAAAAAAGAAAGAAAGGGGGG  791
      ||||||||| || || ||||         ||||||||||||
seq2  AAAAAAAAAGAAGAAAAAAG---------AAGAAAGGGGGG  782

seq1: chr4_145729398_145730597
seq2: B6Ng01-332E04.g_66_1242 (reverse)

seq1  ACAAAAGCTGTTGTTTTTCTTCAGAATGTATATTCTGAGATGTGCAAAAT  50
      ||||||||||||||||    |||| |||||| ||||||||||||| ||||
seq2  ACAAAAGCTGTTGTTT---CTCAG-ATGTAT-TTCTGAGATGTGC-AAAT  44

seq1  ATTAAGATTCCGTAG-ATGATTTAAGAAAAGAATGGAAATCTATTTTATT  99
      | ||||||  ||||| ||||||||  |||||||| |||||||| ||||||
seq2  A-TAAGAT--CGTAGAATGATTTAGAAAAAGAAT-GAAATCTA-TTTATT  89

seq1  CCTTACGGTAGA-GTGGAGTATTAAGGCACAACAGGACCAGACACCACAA  148
      |  ||| ||||| |||||||||||  |||| ||||   |||||| |||||
seq2  C--TAC-GTAGAGGTGGAGTATTA--GCAC-ACAG--ACAGACA-CACAA  130

seq1  TGTCTTGTAATATGTATCAACGGTCAGCATTTTTCAGAGACCTATAGGAC  198
      |||||||| ||||||||||   ||||||| ||||||||||||||||||||
seq2  TGTCTTGT-ATATGTATCA--CGTCAGCA-TTTTCAGAGACCTATAGGAC  176

seq1  TTTCGTTCAATAAATGGGAAATAATGATCAGTTGTTATCCTATAATGTGA  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCG-TCAATAAATGGGAAATAATGATCAGTTGTTATCCTATAATGTGA  225

seq1  ACCAAGCATTTGAGAAGAATTATTATTACTGAATACTCGAAGCACACTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCATTTGAGAAGAATTATTATTACTGAATACTCGAAGCACACTTC  275

seq1  ACATCTGTAAGCATATTTATAGGATAAAGAATATGCTGTCTGGGTGGCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTAAGCATATTTATAGGATAAAGAATATGCTGTCTGGGTGGCTC  325

seq1  AGTTTGCCAGATATTCTTTTAAGTATAATTTTTCTCAATTGGCTCATTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCCAGATATTCTTTTAAGTATAATTTTTCTCAATTGGCTCATTTG  375

seq1  AATTAAATATACAGAATGTTACCAGTTTTATTAGATATTTTGAGGACTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATATACAGAATGTTACCAGTTTTATTAGATATTTTGAGGACTGC  425

seq1  ATTAAAGACCTTAAATAGTTTCCTTTTGAAATGGATTATTTCTGTCTCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGACCTTAAATAGTTTCCTTTTGAAATGGATTATTTCTGTCTCAA  475

seq1  TGAATGTGTTACACAATAATATCTCCTCACTTCCCAACTTGTCTTCATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGTTACACAATAATATCTCCTCACTTCCCAACTTGTCTTCATCT  525

seq1  TGTAACATTTAAGGGTGAACAAGTAAAAAGGTATCATGAAAAGCTTTCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACATTTAAGGGTGAACAAGTAAAAAGGTATCATGAAAAGCTTTCTA  575

seq1  CATTTTTACATTTTCAGAGTTTCTTCAAGCAAAAAATAGTTGACATTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTACATTTTCAGAGTTTCTTCAAGCAAAAAATAGTTGACATTATT  625

seq1  TAAGATTTGAACATTGCATGAAAGTTTTCACATGATTTTCATAATCATAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTGAACATTGCATGAAAGTTTTCACATGATTTTCATAATCATAC  675

seq1  TAATTCTCTAGTGTGGAGCCTCAATTGTTGTCAAGAATAGAACGTGAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCTAGTGTGGAGCCTCAATTGTTGTCAAGAATAGAACGTGAATA  725

seq1  AAACACAGGCCACACTTTCCCCAACAGAAATACTTTCCCCTAAAAAGTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGGCCACACTTTCCCCAACAGAAATACTTTCCCCTAAAAAGTTA  775

seq1  TTAGATATTCTCTTTGACCTGAAATGAAGTCAAAGATATTTCTTGATACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATTCTCTTTGACCTGAAATGAAGTCAAAGATATTTCTTGATACA  825

seq1  ATGCATGAGTTAAGTTTGTATCCTGTAAGTATTCACTGTTAACATTCTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGAGTTAAGTTTGTATCCTGTAAGTATTCACTGTTAACATTCTAG  875

seq1  GAAATAGGCCAAGAGTAAAGGATTCATACCTTTGATATAATTGAAAAGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGGCCAAGAGTAAAGGATTCATACCTTTGATATAATTGAAAAGTT  925

seq1  TCTCTTCTGTAAGTATTCTCTAATGATTTTTAAGATGATATATCTTGGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGTAAGTATTCTCTAATGATTTTTAAGATGATATATCTTGGTA  975

seq1  AAGGATTGTCTCGTTCACTTCATTTATAAATATTCTCTACTGTATTAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGTCTCGTTCACTTCATTTATAAATATTCTCTACTGTATTAAAA  1025

seq1  ACTGATGATTTCTCAGACTGACATTGTATTGTATTTGTCACATACAAACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGATTTCTCAGACTGACATTGTATTGTATTTGTCACATACAAACT  1075

seq1  ATTTGTAAGGTATCTCTCCTGTATGAATTCTCTGATGGCCTTTTTCAGTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAGGTATCTCTCCTGTATGAATTCTCTGATGGCCTTTTTCAGTA  1125

seq1  AAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAAT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAAT  1175

seq1  TC  1200
      ||
seq2  TC  1177