BAC Information

Click to search

BAC

Clone NameB6Ng01-333A01
Chromosome4 (Build37)
Map Location 13,812,098 - 13,813,270
singlet/doubletsinglet
Overlap geneRunx1t1
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333A01.bB6Ng01-333A01.g
ACCGA118940GA118941
length1,2461,159
definitionB6Ng01-333A01.b B6Ng01-333A01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacggcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagttggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
tccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactggttgttatcgtgtagaagaatgcgaatcgatccatacgtatc
tccttgtactaagtcaaatctaagtggatcaaggacttcacataaaacca
gcagacagtgaaacttattgaaggagaagtggggaaagccttgcaggata
tggggcacaagggaaaaatcctgaccgaacagcattggcttgtgctgtag
gatcgagatcgacaatgggagcctactgaagctcctacatctgtcaggca
agaatcggttcgatcagtacaaagaccactcaaccgaattggatag

gaattcacagtgtgagttcaagtcagggtgttgcttctatagagttttgt
ttttgtagaactagtagtagagccagccctttacatttgtggaattttag
gtagaacaattttacttaaatgtcttaagcatcagttacagataagacct
agtaaaacggacaataattccagagaaaaccttttgtctctcagaaaaag
aattttcgacattgatgactaggaggggtgccttttgctgaaagcatggc
cagattattctctgtttttctaaataacaagataaaggaaagagctttcc
tgcctgagggacaaagagaattactgataagataagaaggaactgaatct
ttgctccgaaactccagcatccagaatcttccatccattcttgctatatc
tgtatataaagatatgcctagtgtattttgcaaaaaggaactttgtatcc
agccttagattcgtcacctgcattccagtgctgcagttttgcccaattgc
tgtgctaaagcaacatgatcaatagcgactcttttggcttatggtttcct
cggcatatgagcggagaggaatgggtgcaagggaaggaaactgacagctc
acatcctcgaccgcaagcatgaggcagagaaagaaaactagaaatagagg
gaggatttaaattctccaagcccactcccagtgacacgttctccagcaag
gccaccactccaaatagccctaccaactctaggggctgaggggtcagatg
ccctaaatagacaatgggagataacatttctttaaaccactacacatgcc
ttcctccacttccagatgaaatgttcagtgtctataccgcttgttaggca
tcagttgcctagatttgtactcacagacaggaaatttagtagagttatcc
aagagaaatatgatacaaatgggcctttcgtggtttctgataacgtataa
gaagaattccacttttgggagggttggtgtcttggttttgttttttgtgt
ttgggtgtgcactaggcttgtggtgcttgaagatgtgtggtggatttttg
tttgatgactggctttttgtacttgaagatggtactaagttcctgcacat
caatgcatgcctgtgtaacggcataaccatgcactttaagacttatggct
agatcattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13812098_13813270
seq2: B6Ng01-333A01.g_67_1225

seq1  GAATTCACAGTGTGAGTTCAAGTCAGGGTGTTGCTTCTATAGAGTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGTGAGTTCAAGTCAGGGTGTTGCTTCTATAGAGTTTTGT  50

seq1  TTTTGTAGAACTAGTAGTAGAGCCAGCCCTTTACATTTGTGGAATTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGAACTAGTAGTAGAGCCAGCCCTTTACATTTGTGGAATTTTAG  100

seq1  GTAGAACAATTTTACTTAAATGTCTTAAGCATCAGTTACAGATAAGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACAATTTTACTTAAATGTCTTAAGCATCAGTTACAGATAAGACCT  150

seq1  AGTAAAACGGACAATAATTCCAGAGAAAACCTTTTGTCTCTCAGAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACGGACAATAATTCCAGAGAAAACCTTTTGTCTCTCAGAAAAAG  200

seq1  AATTTTCGACATTGATGACTAGGAGGGGTGCCTTTTGCTGAAAGCATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCGACATTGATGACTAGGAGGGGTGCCTTTTGCTGAAAGCATGGC  250

seq1  CAGATTATTCTCTGTTTTTCTAAATAACAAGATAAAGGAAAGAGCTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATTCTCTGTTTTTCTAAATAACAAGATAAAGGAAAGAGCTTTCC  300

seq1  TGCCTGAGGGACAAAGAGAATTACTGATAAGATAAGAAGGAACTGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGGGACAAAGAGAATTACTGATAAGATAAGAAGGAACTGAATCT  350

seq1  TTGCTCCGAAACTCCAGCATCCAGAATCTTCCATCCATTCTTGCTATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCGAAACTCCAGCATCCAGAATCTTCCATCCATTCTTGCTATATC  400

seq1  TGTATATAAAGATATGCCTAGTGTATTTTGCAAAAAGGAACTTTGTATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATAAAGATATGCCTAGTGTATTTTGCAAAAAGGAACTTTGTATCC  450

seq1  AGCCTTAGATTCGTCACCTGCATTCCAGTGCTGCAGTTTTGCCCAATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAGATTCGTCACCTGCATTCCAGTGCTGCAGTTTTGCCCAATTGC  500

seq1  TGTGCTAAAGCAACATGATCAATAGCGACTCTTTTGGCTTATGGTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAAAGCAACATGATCAATAGCGACTCTTTTGGCTTATGGTTTCCT  550

seq1  CGGCATATGAGCGGAGAGGAATGGGTGCAAGGGAAGGAAACTGACAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATATGAGCGGAGAGGAATGGGTGCAAGGGAAGGAAACTGACAGCTC  600

seq1  ACATCCTCGACCGCAAGCATGAGGCAGAGAAAGAAAACTAGAAATAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCGACCGCAAGCATGAGGCAGAGAAAGAAAACTAGAAATAGAGG  650

seq1  GAGGATTTAAATTCTCCAAGCCCACTCCCAGTGACACGTTCTCCAGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTAAATTCTCCAAGCCCACTCCCAGTGACACGTTCTCCAGCAAG  700

seq1  GCCACCACTCCAAATAGCCCTACCAACTCTAGGGGCTGAGGGGTCAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACTCCAAATAGCCCTACCAACTCTAGGGGCTGAGGGGTCAGATG  750

seq1  CCCTAAATAGACAATGGGAGATAACATTTCTTTAAACCACTACACATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAATAGACAATGGGAGATAACATTTCTTTAAACCACTACACATGCC  800

seq1  TTCCTCCACTTCCAGATGAAATGTTCAGTGTCTATACCGCTTGTTAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCACTTCCAGATGAAATGTTCAGTGTCTATACCGCTTGTTAGGCA  850

seq1  TCAGTTGCCTAGATTTGTACTCACAGACAGGAAATTTAGTAGAGTTATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGCCTAGATTTGTACTCACAGACAGGAAATTTAGTAGAGTTATCC  900

seq1  AAGAGAAATATGATACAAAT-GGCCTTTCGTGGTTTCTGATAAACGTATA  949
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  AAGAGAAATATGATACAAATGGGCCTTTCGTGGTTTCTGAT-AACGTATA  949

seq1  AGAAGAA-TCCACTTT--GGAGGGTTTGGGTGTCTTGGGTTTTGTTTT--  994
      ||||||| ||||||||  ||||||||  |||||||| |||||||||||  
seq2  AGAAGAATTCCACTTTTGGGAGGGTT--GGTGTCTT-GGTTTTGTTTTTT  996

seq1  -TGTTTGGTTG---ACTAGGCTTTTTGTTGCTTGAGGATGTGTGTGGGTT  1040
       ||||||| ||   ||||||| || || ||||||| ||||||||  || |
seq2  GTGTTTGGGTGTGCACTAGGC-TTGTGGTGCTTGAAGATGTGTGGTGGAT  1045

seq1  TTTTGTTTGGTTGACTTGGCTTTTTGTTACTTGAGGAT-GTACTAAAGTT  1089
      |||||||| | |||| |||||||||| ||||||| ||| ||||| |||||
seq2  TTTTGTTT-GATGAC-TGGCTTTTTG-TACTTGAAGATGGTACT-AAGTT  1091

seq1  CCCTGCACATTCATTGCAATGCTGTGTTAAGGGCAATAAAACACATGCAA  1139
       |||||||| ||| ||||   ||||| ||| ||| ||||    |||||| 
seq2  -CCTGCACA-TCAATGCATGCCTGTG-TAACGGC-ATAA---CCATGCA-  1133

seq1  CTTTTTAAGACATTTTAATCCTGCTAGATCATTC  1173
         |||||||| | |       ||||||||||||
seq2  --CTTTAAGACTTAT------GGCTAGATCATTC  1159


| Home | SequenceCutter | Blast | Download |