BAC Information

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BAC

Clone NameB6Ng01-333P01
Chromosome4 (Build37)
Map Location 146,536,901 - 146,698,291
singlet/doubletdoublet
Overlap geneOTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333P01.bB6Ng01-333P01.g
ACCGA119569GA119570
length1,1591,122
definitionB6Ng01-333P01.b B6Ng01-333P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,536,901 - 146,538,069)(146,697,287 - 146,698,291)
sequence
gaattcatccttgatgctaataagtgagaggaagcatggacagcaagaga
gaagttgtaaattttataattgtgctaaggaaattttagatgtaaaaaat
gtagaaattagatgtaaaaactgtagatgtagaaattttagatgtaaaaa
ggggcaaattcaaggcatagcttgacttattaggttcatgaggctcccat
ttacaaagataggaagagggggtacactgaggatgggggggtacaaatga
ggaccttggctattggtgtatgattaagacactttcaatattccatttta
cttaaatatcttggtgactaattttttgtatattttatttatttatattt
caaatattatcccctttcccggttcccctccagaaaccccctattacttc
ccgcctgcttctatgagggtcctcccacatgcccccacctactcctgtct
ccattccctggcattaatgtacactgggccatcaagtctacacaggacct
aggacctctcctcccaggcatgcccaacatgaccatcctctattaaatat
gtagctggggacatgggttgctccatttgtactcgttggttggtgattta
gtctttgggagctctggtgtgtctggttgtttgatattgttgttctccct
atagggttgcaaaccttttcagctccttcagtcctttctctaacttctgc
catatggaccctgtgttcagtccgttggttggctgcaagcatctgccttt
gtattttttaggcactggcagagcctctcaggagacatctatatcaggct
cctgtcagcaagcactaattgtcatccacaatagtgtctgggattgttgt
ctgtatatgggatgaattcccaggcagagcagtctctggatggccttcag
catctgttccacactttgtttccatatttcccttagacaggagagtgggg
tgaaacaaatttatcttggggttgtgaggtctgatccaagagacttacat
atcacatgtaattagttgggaagactatgtgaataaacgaactctagtgg
tgagttttcactgtactcatataattcttgggtttcttgttggcttattg
tcatttaaaataggcctcataaaaggtaatctgacagaacacttgtttat
atagaccgg
gaattcaagaaggcagaaacaaacttaatgaaattccagagaattcctac
aagtgggtaagagaataattatacatatgcaggacgtgaacaccttatcc
aaagatataaaaatctaaggaatgctcactctgaaatgaaacaagaaatg
aactctgttaagcctggtggtaactcagtggccaatatatgaagatgcag
cattcagccaaaataaataaataaataaataaataaataaataaataaat
aaataaataaataaataaaatcagctcgtcaatatatgaagatgcagcat
tcagccaaaataaataaataaataaataaataaacaaacaaataaataaa
taaataaataaataaataaataaataaataaaatcagctcgtcaatgaaa
ggtctttcatcctagctctcagggatgtgacctaaaagccattctggtct
ctatatcaggacatgtgaaagtcaggactagagtgtgggaccctgtttta
caaacaaacaaacgaacaggaaacccatacaagaaattagagctttattt
tctacattgatatcaaaatcaatttaaaaagcacaaggatattagaaggc
tgattatataggtatgaaagaatcaatctcctactggataatacttttat
cttttaaaattggatcctcagtgggtcacaatgttttgaggaatttagtt
gttggaacattgctgaataaagtatgacactgggggttggctatgagaaa
aaagaatagatagatccaagccatcttaattctctcttcctctttagtga
ctggggttgaggatgtgatttttcacctttctacttcaacaacatggctg
tgttctatcagtcttccctgccatggttgatggctatcctctggaagcat
tacgcaaagtagtcttttttcttctattagtttccttgaacatggtgttt
atgaaagcaacagacaaaataaattacagtaaaacatatttctggttgga
tttaagttgccttttcagagagagatttcctgtcatattctgaaactatc
agacaggagtatgttatgtcatgagactatgagcaatttagtatgcttca
tctaaaattatcatagtcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146536901_146538069
seq2: B6Ng01-333P01.b_48_1206

seq1  GAATTCATCCTTGATGCTAATAAGTGAGAGGAAGCATGGACAGCAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTTGATGCTAATAAGTGAGAGGAAGCATGGACAGCAAGAGA  50

seq1  GAAGTTGTAAATTTTATAATTGTGCTAAGGAAATTTTAGATGTAAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTAAATTTTATAATTGTGCTAAGGAAATTTTAGATGTAAAAAAT  100

seq1  GTAGAAATTAGATGTAAAAACTGTAGATGTAGAAATTTTAGATGTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATTAGATGTAAAAACTGTAGATGTAGAAATTTTAGATGTAAAAA  150

seq1  GGGGCAAATTCAAGGCATAGCTTGACTTATTAGGTTCATGAGGCTCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAATTCAAGGCATAGCTTGACTTATTAGGTTCATGAGGCTCCCAT  200

seq1  TTACAAAGATAGGAAGAGGGGGTACACTGAGGATGGGGGGGTACAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGATAGGAAGAGGGGGTACACTGAGGATGGGGGGGTACAAATGA  250

seq1  GGACCTTGGCTATTGGTGTATGATTAAGACACTTTCAATATTCCATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTGGCTATTGGTGTATGATTAAGACACTTTCAATATTCCATTTTA  300

seq1  ATTATATATCTTGGTGACTAATTTTTTGTATATTTTATTTATTTATATTT  350
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATCTTGGTGACTAATTTTTTGTATATTTTATTTATTTATATTT  350

seq1  CAAATATTATCCCCTTTCCCGGTTCCCCTCCAGAAACCCCCTATTACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTATCCCCTTTCCCGGTTCCCCTCCAGAAACCCCCTATTACTTC  400

seq1  CCGCCTGCTTCTATGAGGGTCCTCCCACATGCCCCCACCTACTCCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGCTTCTATGAGGGTCCTCCCACATGCCCCCACCTACTCCTGTCT  450

seq1  CCATTCCCTGGCATTAATGTACACTGGGCCATCAAGTCTACACAGGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCTGGCATTAATGTACACTGGGCCATCAAGTCTACACAGGACCT  500

seq1  AGGACCTCTCCTCCCAGGCATGCCCAACATGACCATCCTCTATTAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTCTCCTCCCAGGCATGCCCAACATGACCATCCTCTATTAAATAT  550

seq1  GTAGCTGGGGACATGGGTTGCTCCATTTGTACTCGTTGGTTGGTGATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGGGGACATGGGTTGCTCCATTTGTACTCGTTGGTTGGTGATTTA  600

seq1  GTCTTTGGGAGCTCTGGTGTGTCTGGTTGTTTGATATTGTTGTTCTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGGAGCTCTGGTGTGTCTGGTTGTTTGATATTGTTGTTCTCCCT  650

seq1  ATTGGGTTGCAAACCTTTTCAGCTCCTTCAGTCCTTTCTCTAACTTCTGC  700
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTTGCAAACCTTTTCAGCTCCTTCAGTCCTTTCTCTAACTTCTGC  700

seq1  CATATGGACCCTGTGTTCAGTCCATTGGTTGGCTGCAAGCATCTGCCTTT  750
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATATGGACCCTGTGTTCAGTCCGTTGGTTGGCTGCAAGCATCTGCCTTT  750

seq1  GTATTTTTTAGGCACTGGCAGAGCCTCTCAGGAGACATCTATATCAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTAGGCACTGGCAGAGCCTCTCAGGAGACATCTATATCAGGCT  800

seq1  CCTGTCAGCAAGCACTAATTGTCATCCACAATAGTGTCTGGGATTGTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAGCAAGCACTAATTGTCATCCACAATAGTGTCTGGGATTGTTGT  850

seq1  CTGTATATGGGATGAATTCCCAGGCAGAGCAGTCTCTGGATGGCCTTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATGGGATGAATTCCCAGGCAGAGCAGTCTCTGGATGGCCTTCAG  900

seq1  CATCTGTTCCACACTTTGTTTCCATATTTCCCTTAGACAGGAGAGTGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTCCACACTTTGTTTCCATATTTCCCTTAGACAGGAGAGTGGGG  950

seq1  TGAAACAAATTTAATCTTTGGGGTTGTGAGGTCTGATCCCAAGAGGACTT  1000
      |||||||||||| ||| |||||||||||||||||||| |||||| |||||
seq2  TGAAACAAATTT-ATC-TTGGGGTTGTGAGGTCTGAT-CCAAGA-GACTT  996

seq1  ACATATCACATGTAATTAGTT-GGAAGACATATGTGATAAAACAAACTCT  1049
      ||||||||||||||||||||| ||||||| |||||||  |||| ||||||
seq2  ACATATCACATGTAATTAGTTGGGAAGAC-TATGTGAATAAACGAACTCT  1045

seq1  AGT-GTGAGTTTTCACTGTACTTCATATAATTCTTGGGTTTCTTTGTTCT  1098
      ||| ||||||||||||||||| |||||||||||||||||||| |||||  
seq2  AGTGGTGAGTTTTCACTGTAC-TCATATAATTCTTGGGTTTC-TTGTT-G  1092

seq1  GCTTTTATTGTCATTTTAGATAGGGTCTCAATAAGAAGTATATCTGGACA  1148
      ||  |||||||||||| | ||| || ||| |||| | ||| |||| ||||
seq2  GC--TTATTGTCATTTAAAATA-GGCCTC-ATAAAAGGTA-ATCT-GACA  1136

seq1  G-ACACTTG-TTATATAGACCGG  1169
      | ||||||| |||||||||||||
seq2  GAACACTTGTTTATATAGACCGG  1159

seq1: chr4_146697287_146698291
seq2: B6Ng01-333P01.g_68_1189 (reverse)

seq1  ACATGACTATGATAATTTTAGATGATACCATTTCTTAAAATGGCCTCATA  50
      ||||||||||||||||||||||||| | ||  |  |||| ||  ||||||
seq2  ACATGACTATGATAATTTTAGATGA-AGCA--TACTAAATTG--CTCATA  45

seq1  GTTCTCATGACATAACATACTTCCTGTTCTTGATTAGGTTTCAGAATATG  100
      | |||||||||||||||||| ||||||   ||||   |||||||||||||
seq2  G-TCTCATGACATAACATAC-TCCTGT--CTGAT--AGTTTCAGAATATG  89

seq1  ACAGGAATTCTCTCTCTG-AAAGGCAACCTTAAATCCAACCAG-AATATG  148
      ||||||| |||||||||| |||||||| ||||||||||||||| ||||||
seq2  ACAGGAAATCTCTCTCTGAAAAGGCAA-CTTAAATCCAACCAGAAATATG  138

seq1  TTTTACTGTAATTTATTTTTGTCTGTTGCTTTCATAAAACACCATGTTCA  198
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  TTTTACTGTAATTTA-TTTTGTCTGTTGCTTTCAT-AAACACCATGTTCA  186

seq1  AGGAAACTAATAGAAG-AAAAAGACTACTTTGCGTAATGCTTCCAGAGGA  247
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGAAACTAATAGAAGAAAAAAGACTACTTTGCGTAATGCTTCCAGAGGA  236

seq1  TAGCCATCAACCATGGCAGGGAAGACTGATAGAACACAGCCATGTTGTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATCAACCATGGCAGGGAAGACTGATAGAACACAGCCATGTTGTTG  286

seq1  AAGTAGAAAGGTGAAAAATCACATCCTCAACCCCAGTCACTAAAGAGGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAAGGTGAAAAATCACATCCTCAACCCCAGTCACTAAAGAGGAA  336

seq1  GAGAGAATTAAGATGGCTTGGATCTATCTATTCTTTTTTCTCATAGCCAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATTAAGATGGCTTGGATCTATCTATTCTTTTTTCTCATAGCCAA  386

seq1  CCCCCAGTGTCATACTTTATTCAGCAATGTTCCAACAACTAAATTCCTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTGTCATACTTTATTCAGCAATGTTCCAACAACTAAATTCCTCA  436

seq1  AAACATTGTGACCCACTGAGGATCCAATTTTAAAAGATAAAAGTATTATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGTGACCCACTGAGGATCCAATTTTAAAAGATAAAAGTATTATC  486

seq1  CAGTAGGAGATTGATTCTTTCATACCTATATAATCAGCCTTCTAATATCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGAGATTGATTCTTTCATACCTATATAATCAGCCTTCTAATATCC  536

seq1  TTGTGCTTTTTAAATTGATTTTGATATCAATGTAGAAAATAAAGCTCTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTTTTAAATTGATTTTGATATCAATGTAGAAAATAAAGCTCTAA  586

seq1  TTTCTTGTATGGGTTTCCTGTTCGTTTGTTTGTTTGTAAAACAGGGTCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTATGGGTTTCCTGTTCGTTTGTTTGTTTGTAAAACAGGGTCCC  636

seq1  ATACTCTAGTCCTGACTTTCACATGTCCTGATATAGAGACCAGAATGGCT  697
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTAGTCCTGACTTTCACATGTCCTGATATAGAGACCAGAATGGCT  686

seq1  TTTAGGTCACATCCCTGAGAGCTAGGATGAAAGACCTTTCATTGACGAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTCACATCCCTGAGAGCTAGGATGAAAGACCTTTCATTGACGAGC  736

seq1  TGATT---------------------------------------------  752
      |||||                                             
seq2  TGATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTGTT  786

seq1  --------------------------------------------------  752
                                                        
seq2  TGTTTATTTATTTATTTATTTATTTATTTTGGCTGAATGCTGCATCTTCA  836

seq1  ---------------------------------TTTATTTATTTATTTAT  769
                                       |||||||||||||||||
seq2  TATATTGACGAGCTGATTTTATTTATTTATTTATTTATTTATTTATTTAT  886

seq1  TTATTTATTTATTTATTTATTTATTTTGGCTGAATGCTGCATCTTCATAT  819
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTATTTATTTTGGCTGAATGCTGCATCTTCATAT  936

seq1  ATTGGCCACTGAGTTACCACCAGGCTTAACAGAGTTCATTTCTTGTTTCA  869
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCACTGAGTTACCACCAGGCTTAACAGAGTTCATTTCTTGTTTCA  986

seq1  TTTCAGAGTGAGCATTCCTTAGATTTTTATATCTTTGGATAAGGTGTTCA  919
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGTGAGCATTCCTTAGATTTTTATATCTTTGGATAAGGTGTTCA  1036

seq1  CGTCCTGCATATGTATAATTATTCTCTTACCCACTTGTAGGAATTCTCTG  969
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTGCATATGTATAATTATTCTCTTACCCACTTGTAGGAATTCTCTG  1086

seq1  GAATTTCATTAAGTTTGTTTCTGCCTTCTTGAATTC  1005
      ||||||||||||||||||||||||||||||||||||
seq2  GAATTTCATTAAGTTTGTTTCTGCCTTCTTGAATTC  1122