BAC Information

Click to search

BAC

Clone NameB6Ng01-333P08
Chromosome4 (Build37)
Map Location 76,383,246 - 76,504,798
singlet/doubletdoublet
Overlap geneLOC667858, LOC667862
Upstream geneLOC100039884, LOC667845, Ptprd
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333P08.bB6Ng01-333P08.g
ACCGA119583GA119584
length1,1691,183
definitionB6Ng01-333P08.b B6Ng01-333P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,383,246 - 76,384,420)(76,503,587 - 76,504,798)
sequence
gaattccagacacatgaaactgtctagagtgtgaactgacagacaaggaa
tgaatatacacaaattgctgagcagtaacaaattgtactgatacttcact
tcctagatctaggaagatagtcggggttcaatgattccagtgtttcataa
cttctaaaaattagagtagagattctaattccaagtccagctgttggact
gatatacttttcatattaaaaacacacaaagatattacaagtaaagaaga
tcattggctaacattactggtaaacaaagaaaaatcaccttcatggttaa
catgttcacaatctaaatttgaaacatattaatagaatcatgaatcccaa
taaagtgacttttgtgtttagatgtaagggttgttcaatgtatccaagtc
aataaacacaataatacagtgtcagcaaaatcaagagttaaactgcacat
attatctgaggagatgtgctcaacctcaaaagaaaaaactgttccatata
tatataagtatgctttcttgataaaaaagcttgaacaggaactagggata
tagctttgtggttaagagcaagtactgtttttgcagagaacctaacttta
gttctcaaatcccacattggatgactcaaccacctgaaactcttccacca
tgattactctccaatgtctttggcctctaatgacatcttcactcacatgc
acaaagctgtttctcccttcctgcctcatacaataagcaaatttgattaa
ggttcaatagattagaaaaagaaagaaggtacttcaacttttaaatgcca
tctattacaaactaatagtgaggatcactgagcacttaatattcttaaac
ttttcctagggattgagggccaatgcaatggtgaatacttatagcttctt
ttcagcacagtactggaagtcttggccagagtaataatggaagagaaata
aataaaagtgcattataataggagaaaagagatacaatttttttctattt
gttaatataaatctgatgtagataaacaccaagattctactgaaaagaat
ttaatatatttcataatctcaggttccacctataaaaataaacatgatac
ttaaaacatagaaagggttattctattatactacaaagaggtatttgtag
gattaaatgggagtccaac

gaattctatgaaatgcatgcatgagatttcattttgttttgctttctcag
acagaatcttactgggtagctaggctggacttgttgcagtgacctcctac
ctctgcctcccaagtgctaggattacaaacttcatcaccactttcttgat
gctgtggttacatatatcacatatactcaggaatgcctcagtgaaagtta
atgcacaccagtcttataaatgtgcattatcctcacttactcttgataaa
atatcttatcaatgagaaaatgtttcatagctggctcaagattgaaagga
attaattattggccttttgtgaaagatttatgttaagaaacacacatgtc
aggatgttagcaattttggcagtttagtcaggattagtttgagaactcag
aatggtagttccaaattgtaggtaatttaaagtaatcaaacctgtctgaa
acagccttcaaaggttggttaaacatcttataaaattcattagcaaatcc
atctggaccagggtcttctccagatgggaggcattcattactgttcttca
ttacttatcatttattataggtggagtttatttttggaggtttatgatag
ttctattcaataaataaactaagaaatcatttattactcatcgatatata
tttctataatgaccacataaaaacattagtggtatgtttttgacatatcc
caattaacatacatgatttatattacatgtgcatttaaaaatttttaaat
gtaaaaaattgtgactgtttttgaaaaaaaatgttacctctattgctatc
ttttagtgaaatgtaactttctgaatatgtaagccttcataagcatcatc
ttcatagggagaagcttaattctataactggcattttaagatattcatgc
taattatagtaaaagaaaatactcaaaagcatatgaataagtcattagat
atatgttcaatgaaaattccacaaatatttgtgaatccttattttattac
aggagcatcgattcttaaaataatattatgaaatacatttatcacttagg
aatgaataaataaattaataaaggatgacttgtaatgagaaaacatgaca
ccagagaaaatagcgcattcgagagccttagcatcctctcatgttaaagg
cctcgacattggaggtggacaagagaacccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76383246_76384420
seq2: B6Ng01-333P08.b_48_1216

seq1  GAATTCCAGACACATGAAACTGTCTAGAGTGTGAACTGACAGACAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACACATGAAACTGTCTAGAGTGTGAACTGACAGACAAGGAA  50

seq1  TGAATATACACAAATTGCTGAGCAGTAACAAATTGTACTGATACTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATACACAAATTGCTGAGCAGTAACAAATTGTACTGATACTTCACT  100

seq1  TCCTAGATCTAGGAAGATAGTCGGGGTTCAATGATTCCAGTGTTTCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGATCTAGGAAGATAGTCGGGGTTCAATGATTCCAGTGTTTCATAA  150

seq1  CTTCTAAAAATTAGAGTAGAGATTCTAATTCCAAGTCCAGCTGTTGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAAAATTAGAGTAGAGATTCTAATTCCAAGTCCAGCTGTTGGACT  200

seq1  GATATACTTTTCATATTAAAAACACACAAAGATATTACAAGTAAAGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACTTTTCATATTAAAAACACACAAAGATATTACAAGTAAAGAAGA  250

seq1  TCATTGGCTAACATTACTGGTAAACAAAGAAAAATCACCTTCATGGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCTAACATTACTGGTAAACAAAGAAAAATCACCTTCATGGTTAA  300

seq1  CATGTTCACAATCTAAATTTGAAACATATTAATAGAATCATGAATCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCACAATCTAAATTTGAAACATATTAATAGAATCATGAATCCCAA  350

seq1  TAAAGTGACTTTTGTGTTTAGATGTAAGGGTTGTTCAATGTATCCAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGACTTTTGTGTTTAGATGTAAGGGTTGTTCAATGTATCCAAGTC  400

seq1  AATAAACACAATAATACAGTGTCAGCAAAATCAAGAGTTAAACTGCACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACAATAATACAGTGTCAGCAAAATCAAGAGTTAAACTGCACAT  450

seq1  ATTATCTGAGGAGATGTGCTCAACCTCAAAAGAAAAAACTGTTCCATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGAGGAGATGTGCTCAACCTCAAAAGAAAAAACTGTTCCATATA  500

seq1  TATATAAGTATGCTTTCTTGATAAAAAAGCTTGAACAGGAACTAGGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGTATGCTTTCTTGATAAAAAAGCTTGAACAGGAACTAGGGATA  550

seq1  TAGCTTTGTGGTTAAGAGCAAGTACTGTTTTTGCAGAGAACCTAACTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGTGGTTAAGAGCAAGTACTGTTTTTGCAGAGAACCTAACTTTA  600

seq1  GTTCTCAAATCCCACATTGGATGACTCAACCACCTGAAACTCTTCCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAAATCCCACATTGGATGACTCAACCACCTGAAACTCTTCCACCA  650

seq1  TGATTACTCTCCAATGTCTTTGGCCTCTAATGACATCTTCACTCACATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTCTCCAATGTCTTTGGCCTCTAATGACATCTTCACTCACATGC  700

seq1  ACAAAGCTGTTTCTCCCTTCCTGCCTCATACAATAAGCAAATTTGATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTGTTTCTCCCTTCCTGCCTCATACAATAAGCAAATTTGATTAA  750

seq1  GGTTCAATAGATTAGAAAAAGAAAGAAGGTACTTCAACTTTTAAATGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATAGATTAGAAAAAGAAAGAAGGTACTTCAACTTTTAAATGCCA  800

seq1  TCTATTACAAACTAATAGTGAGGATCACTGAGCACTTAATATTCTTAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTACAAACTAATAGTGAGGATCACTGAGCACTTAATATTCTTAAAC  850

seq1  TTTTCCTAGGGATTGAGGGCCAATGCAATGGTGAATACTTATAGCTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAGGGATTGAGGGCCAATGCAATGGTGAATACTTATAGCTTCTT  900

seq1  TTCAGCACAGTACTGGAAGTCTTGGCCAGAGTAATAATGGAAGAGAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACAGTACTGGAAGTCTTGGCCAGAGTAATAATGGAAGAGAAATA  950

seq1  AATAAAAGTGCATTATAATAGGAGAAAAGAGATACAATTTTTTTCTATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGTGCATTATAATAGGAGAAAAGAGATACAATTTTTTTCTATTT  1000

seq1  GTTAATAATAAAATCTGATGTAGATAAAACACCAAAGATTCTACTGAAAA  1050
      |||||||   ||||||||||||||| ||||||| ||||||||||||||||
seq2  GTTAATA--TAAATCTGATGTAGAT-AAACACC-AAGATTCTACTGAAAA  1046

seq1  GAATTTTAATATAATTTCATAATCTCA-GTTCCA-CTAT-AAAATAAACA  1097
      ||| |||||||| |||||||||||||| |||||| |||| ||||||||||
seq2  GAA-TTTAATAT-ATTTCATAATCTCAGGTTCCACCTATAAAAATAAACA  1094

seq1  TTGATAC-TAAAACATTAGAAAGG--TA-TCTA-TATACTACAAAGGAAG  1142
       |||||| ||||||| ||||||||  || |||| ||||||||||| || |
seq2  -TGATACTTAAAACA-TAGAAAGGGTTATTCTATTATACTACAAA-GAGG  1141

seq1  TATTTGAAAAGAATTTTAAAATGGGAGTCCAAC  1175
      ||||||   || |||   |||||||||||||||
seq2  TATTTG--TAGGATT---AAATGGGAGTCCAAC  1169


seq1: chr4_76503587_76504798
seq2: B6Ng01-333P08.g_69_1251 (reverse)

seq1  GAAGGGTTCTCTT-TCTCACTCC-ATGTCTGAAGCTTTTTAAACATG-GA  47
      ||||||||||||| ||   |||| ||||| || || |||  |||||| ||
seq2  GAAGGGTTCTCTTGTCCACCTCCAATGTC-GAGGCCTTT--AACATGAGA  47

seq1  GGAATTGCTAA-GCTCTTCTGATTTGGCTGCTAATTTTCTCT-GTGTCAA  95
      |||  |||||| |||||   || |  |||    ||||||||| |||||| 
seq2  GGA--TGCTAAGGCTCT--CGAATGCGCT----ATTTTCTCTGGTGTCA-  88

seq1  TTTTTTTCTTCATTTTACAAATTTCAATTCCCTTTTTATTTTATTTTATT  145
       | ||||| |||  ||||||   |||  ||| || ||| |||||||    
seq2  -TGTTTTC-TCA--TTACAA--GTCA--TCCTTTATTAATTTATTT----  126

seq1  TTATTTCATTTCCTAAGTGATTAATTGTATTTTCATAATATTTATTTTAA  195
          |||| ||||||||||| ||| |||| |||||||||| |||||||||
seq2  ---ATTCA-TTCCTAAGTGA-TAAATGTA-TTTCATAATA-TTATTTTAA  169

seq1  GAATCGATGCTCCCTGTAATAAAATAAGGATTCACAAATATTTGT-GAAT  244
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  GAATCGATGCT-CCTGTAATAAAATAAGGATTCACAAATATTTGTGGAAT  218

seq1  TTTCATTGAACATATATTCTAATGACTTATTCATATGCTTTTGAGTATTT  294
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCATTGAACATATA-TCTAATGACTTATTCATATGCTTTTGAGTATTT  267

seq1  TCTTTTACTATAATTTAGCATGAATATCTTAAAATGCCAGTTTATAGAAT  344
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  TCTTTTACTATAA-TTAGCATGAATATCTTAAAATGCCAG-TTATAGAAT  315

seq1  TAAGCTTCTCCCTATGAAGATGATGCTTATGAAGGCTTACATATTCAGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCTCCCTATGAAGATGATGCTTATGAAGGCTTACATATTCAGAA  365

seq1  AGTTACATTTCACTAAAAGATAGCAATAGAGGTAACATTTTTTTTCAAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATTTCACTAAAAGATAGCAATAGAGGTAACATTTTTTTTCAAAA  415

seq1  ACAGTCACAATTTTTTACATTTAAAAATTTTTAAATGCACATGTAATATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACAATTTTTTACATTTAAAAATTTTTAAATGCACATGTAATATA  465

seq1  AATCATGTATGTTAATTGGGATATGTCAAAAACATACCACTAATGTTTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTATGTTAATTGGGATATGTCAAAAACATACCACTAATGTTTTT  515

seq1  ATGTGGTCATTATAGAAATATATATCGATGAGTAATAAATGATTTCTTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTCATTATAGAAATATATATCGATGAGTAATAAATGATTTCTTAG  565

seq1  TTTATTTATTGAATAGAACTATCATAAACCTCCAAAAATAAACTCCACCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTGAATAGAACTATCATAAACCTCCAAAAATAAACTCCACCT  615

seq1  ATAATAAATGATAAGTAATGAAGAACAGTAATGAATGCCTCCCATCTGGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATGATAAGTAATGAAGAACAGTAATGAATGCCTCCCATCTGGA  665

seq1  GAAGACCCTGGTCCAGATGGATTTGCTAATGAATTTTATAAGATGTTTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCCTGGTCCAGATGGATTTGCTAATGAATTTTATAAGATGTTTAA  715

seq1  CCAACCTTTGAAGGCTGTTTCAGACAGGTTTGATTACTTTAAATTACCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTTTGAAGGCTGTTTCAGACAGGTTTGATTACTTTAAATTACCTA  765

seq1  CAATTTGGAACTACCATTCTGAGTTCTCAAACTAATCCTGACTAAACTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGGAACTACCATTCTGAGTTCTCAAACTAATCCTGACTAAACTGC  815

seq1  CAAAATTGCTAACATCCTGACATGTGTGTTTCTTAACATAAATCTTTCAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGCTAACATCCTGACATGTGTGTTTCTTAACATAAATCTTTCAC  865

seq1  AAAAGGCCAATAATTAATTCCTTTCAATCTTGAGCCAGCTATGAAACATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCAATAATTAATTCCTTTCAATCTTGAGCCAGCTATGAAACATT  915

seq1  TTCTCATTGATAAGATATTTTATCAAGAGTAAGTGAGGATAATGCACATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTGATAAGATATTTTATCAAGAGTAAGTGAGGATAATGCACATT  965

seq1  TATAAGACTGGTGTGCATTAACTTTCACTGAGGCATTCCTGAGTATATGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACTGGTGTGCATTAACTTTCACTGAGGCATTCCTGAGTATATGT  1015

seq1  GATATATGTAACCACAGCATCAAGAAAGTGGTGATGAAGTTTGTAATCCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGTAACCACAGCATCAAGAAAGTGGTGATGAAGTTTGTAATCCT  1065

seq1  AGCACTTGGGAGGCAGAGGTAGGAGGTCACTGCAACAAGTCCAGCCTAGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGGAGGCAGAGGTAGGAGGTCACTGCAACAAGTCCAGCCTAGC  1115

seq1  TACCCAGTAAGATTCTGTCTGAGAAAGCAAAACAAAATGAAATCTCATGC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTAAGATTCTGTCTGAGAAAGCAAAACAAAATGAAATCTCATGC  1165

seq1  ATGCATTTCATAGAATTC  1212
      ||||||||||||||||||
seq2  ATGCATTTCATAGAATTC  1183


| Home | SequenceCutter | Blast | Download |