BAC Information

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BAC

Clone NameB6Ng01-334H12
Chromosome4 (Build37)4 (Build37)
Map Location 146,757,714 - 146,758,826147,075,660 - 147,075,777
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Downstream geneLOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334H12.bB6Ng01-334H12.g
ACCGA119965GA119966
length1,107814
definitionB6Ng01-334H12.b B6Ng01-334H12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,757,714 - 146,758,826)(147,075,660 - 147,075,777)
sequence
gaattccaggatagccagggctatacagagaaaccttgtctccaaaacaa
caacaacaaaaacaaaaagcaagtgatagtaaattaactgaaaggctaaa
aagtgcagacttatgcctattcagaaaaaggtgtgtattggaggaaatgt
cagtttcaagttttaaagtagaagctgtattttttctggtgacttcatgg
aggaagcatgtaaaaccatgggtgcactggtagacatacactgtcagaca
gacagtttggtatttcagaacacaggataagcatgtagggagagcgatcg
actccttacgtctagcagacaagagaggtcttttattagtttttatgtta
cagcagcatatccaagacctttttagacactaaggggtcttctgatatct
cagattattctttaggaatgtataaaaccaagtgatattttcttgtattt
tcagtagcttattaagtgtattatcagattggagtgttctctttaaatat
ttgtagttcttgagttgaagaattatgttccttgtaatttgagaaaatgt
accttctctgtatccttatttgacacattgaaaatattccaggtcttatt
tgctctttgtaagcactactgtactgtgaaaaggtattgtggtggctttg
cacatccttgtctctctctagaaaaaaggagtagaatgatgacagctgtc
tttatcttttgtagtgagaggtgtaggatgttggctattatcttccttag
actgaggaatattcctgttgttctcaaaatacccagagctttcacagtga
tcccctgtgatatttttccctaggctttttgtaactatatcatggttatg
agccctctctcactgtacatacattgtgctgtgacttgttttgtttgtgc
ctgttgaaatagtctttcatctctggcatgaaatttagtagagtttcctt
tctgcatccacagaaaagtctttgtttaatgtactttggtgcactttgtt
actttttcactgtacatattttatggtcatttttgggaatacaaataagt
catttttttgtgaggagtctacacatacccctttttttgttttctggcaa
tatacat
gaattcaattttcatatcctatgttgtcctcatttccttaaggaaatttc
tcctcacaagtaccttgctgcaatcctgtcttcatgttttattcaaacct
aattgtgacattaataatgaaagactccgagaggagcccctcgctcaggc
ctcaggacaatagtggacacccaagaactcacgacagaccgagcttgttg
caaaccacatgaggctttattcggggaaagccagagctctggggatgact
catatcccacgcaggggtagaggagtcgtccccgagggaaaagagtttcc
agtttttataggccctcgggggggaaaggagaagggggagattaggggat
ttccagatctaaacaatatctattctaaaatgattgattcctcaagaaat
gggtatgggagggaaacaaggaaaaaatctaatgaaggtacagcaatggg
cacacacctggtcagaacattggcaggcacacaggttcgaggagtggcca
aagcattgtgcacctctatttttctaaatcaatgaagccagttctactaa
caataaaatctattttaccaatttcagggcttctatgaccttttacattc
tgccagaatctttcattccccacttcttctagttactagttctaatctta
gaactagactgcaacctcttcaagggtctatgaagactgatattgttgtc
ttaatactaacaactgaacagcactagtcctctctctaacaaaggtcatt
agttttattaaggattagtgggccacatgtcagccagtaaaagccaaaat
tattagaggggccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146757714_146758826
seq2: B6Ng01-334H12.b_48_1154

seq1  GAATTCCAGGATAGCCAGGGCTATACAGAGAAACCTTGTCTCCAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGCCAGGGCTATACAGAGAAACCTTGTCTCCAAAACAA  50

seq1  CAACAACAAAAACAAAAAGCAAGTGATAGTAAATTAACTGGAAGGCTAAA  100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAACAACAAAAACAAAAAGCAAGTGATAGTAAATTAACTGAAAGGCTAAA  100

seq1  AAGTGCAGACTTATGCCTATTCAGAAAAAGGTGTGTATTGGAGGAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAGACTTATGCCTATTCAGAAAAAGGTGTGTATTGGAGGAAATGT  150

seq1  CAGTTTCAAGTTTTAAAGTAGAAGCTGTATTTTTTCTGGTGACTTCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCAAGTTTTAAAGTAGAAGCTGTATTTTTTCTGGTGACTTCATGG  200

seq1  AGGAAGCATGTAAAACCATGGGTGCACTGGTAGACATACACTGTCAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCATGTAAAACCATGGGTGCACTGGTAGACATACACTGTCAGACA  250

seq1  GACAGTTTGGTATTTCAGAACACAGGATAAGCATGTAGGGAGAGCGATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTGGTATTTCAGAACACAGGATAAGCATGTAGGGAGAGCGATCG  300

seq1  ACTCCTTACGTCTAGCAGACAAGAGAGGTCTTTTATTAGTTTTTATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTACGTCTAGCAGACAAGAGAGGTCTTTTATTAGTTTTTATGTTA  350

seq1  CAGCAGCATATCCAAGACCTTTTTAGACACTAAGGGGTCTTCTGATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCATATCCAAGACCTTTTTAGACACTAAGGGGTCTTCTGATATCT  400

seq1  CAGATTATTCTTTAGGAATGTATAAAACCAAGTGATATTTTCTTGTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATTCTTTAGGAATGTATAAAACCAAGTGATATTTTCTTGTATTT  450

seq1  TCAGTAGCTTATTAAGTGTATTATCAGATTGGAGTGTTCTCTTTAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGCTTATTAAGTGTATTATCAGATTGGAGTGTTCTCTTTAAATAT  500

seq1  TTGTATTTCTTGAGTTGAAGAATTATGTTCCTTGTAATTTGAGAAAATGT  550
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTCTTGAGTTGAAGAATTATGTTCCTTGTAATTTGAGAAAATGT  550

seq1  ACCTTCTCTGTATCCTTATTTGACACATTGAAAATATTCCAGGTCTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCTTCTCTGTATCCTTATTTGACACATTGAAAATATTCCAGGTCTT-AT  599

seq1  TTGCTCTTTGTAAGCACTACTGTACTGTGAAAAGGTATTGTGGTGGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTTGTAAGCACTACTGTACTGTGAAAAGGTATTGTGGTGGCTTT  649

seq1  GCACATCCTTGTCTCTCTCTAGAAAAAAGGAGTAGAATGATGACAGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCCTTGTCTCTCTCTAGAAAAAAGGAGTAGAATGATGACAGCTGT  699

seq1  CTTTATCTTTTGTAGTGAGAGGTGTAGGATGTTGGCTATTATCTTCCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTTTTGTAGTGAGAGGTGTAGGATGTTGGCTATTATCTTCCTTA  749

seq1  GACTGAGGAATATTCCTTTTGTTCTCAAAATACCCAGAGCTTTCACAGTG  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACTGAGGAATATTCCTGTTGTTCTCAAAATACCCAGAGCTTTCACAGTG  799

seq1  ATCCCCTGTGATATTTTTCCCTAGGCTTTTTGTAACTATATCATGGTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGTGATATTTTTCCCTAGGCTTTTTGTAACTATATCATGGTTAT  849

seq1  GAGCCCTCTCTCACTGTACATACATTGTGCTGTGACTTGTTTTGTTTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTCTCTCACTGTACATACATTGTGCTGTGACTTGTTTTGTTTGTG  899

seq1  CCTGTTGAAATAGTCTTTCATCTCTGGCATGAAATTAAGTAGAGTTTCCT  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCTGTTGAAATAGTCTTTCATCTCTGGCATGAAATTTAGTAGAGTTTCCT  949

seq1  TTCTGCATCCACAGAAAAAGTCTTTGTTTAATGTACTTTGGTGCACTTTG  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCTGCATCCACAG-AAAAGTCTTTGTTTAATGTACTTTGGTGCACTTTG  998

seq1  TTACTTTTTTCACTGTACATATTTTATGGTCATTTTTTTGGGAATACAAA  1050
      |||| |||||||||||||||||||||||||||  ||||||||||||||||
seq2  TTAC-TTTTTCACTGTACATATTTTATGGTCA--TTTTTGGGAATACAAA  1045

seq1  TAAAGTCATTTTTTTGTGAGGAGTCTACAACATACCCCTTTTTCTGTTTT  1100
      | |||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  T-AAGTCATTTTTTTGTGAGGAGTCTAC-ACATACCCCTTTTTTTGTTTT  1093

seq1  CT-GCAATATACTT  1113
      || ||||||||| |
seq2  CTGGCAATATACAT  1107

seq1: chr4_147075660_147075777
seq2: B6Ng01-334H12.g_67_183

seq1  GAATTCAATTTTCATGTCCTATGTTGTCCTCATTTCCTTAAGGAAATTTC  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTTCATATCCTATGTTGTCCTCATTTCCTTAAGGAAATTTC  50

seq1  TCCTCACAAGTAACTTGCTGCAATCCTGTCTTCATGTTTTATTCAAACCT  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAAGTACCTTGCTGCAATCCTGTCTTCATGTTTTATTCAAACCT  100

seq1  AAGGTGTGACATTAATAA  118
      ||  ||||||||||||||
seq2  AA-TTGTGACATTAATAA  117