BAC Information

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BAC

Clone NameB6Ng01-335C23
Chromosome4 (Build37)
Map Location 146,473,336 - 146,722,138
singlet/doubletdoublet
Overlap geneLOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335C23.bB6Ng01-335C23.g
ACCGA120494GA120495
length1,163802
definitionB6Ng01-335C23.b B6Ng01-335C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,473,336 - 146,474,406)(146,721,336 - 146,722,138)
sequence
gaattcaacccagagaatagatcgctgctgtaatgaacctaaccatatta
ggttctggaggaatgaagaaattttggaactctggaaaataaaagcagtt
gaataatgtaagcagtgcttattgggccatccttataggaaacagaaaga
cagtaatattggtagcaatgtggactatggaggcccaatgaggtttcaga
gggaacaagttcagcagcagagctagagacaacacctgtgagatttggca
aagaatttggctgccttttgcacttttcctaaaaattgtctgagagtaaa
tttaaagtaacacactatgttttttttatggaaacaatttcaagaaagca
taatatttagtctgcaacatggttattattagcaataaatgaaaaagagc
aagtggaataaaaggaaatacaaatgtagttttgaagagaacatgatcac
cactaaactaagcattacagccaagagctgagcataagtgctattaacaa
gagcatctctggggctggtgagatgtctcagcagtttagagcactggatg
tccttcaaaggactggggttcaattctcaccaaccacatggaagctccca
aactgtaactctaacaccttcacatggatataaatggaggcaaaacaccc
atgcaaataaaataagaagtgaataaataaataaataagcccctgctctg
ccctggaacaaagggaaggctgtcctcagagcaaaatcccacttagctaa
gcatacaacttgtgaaacaaaaagtgttgaggaacgttctgcccctagaa
aacattatgatatggccaggaagtggaatacagtagtttgaatagcagtg
tcccccacaggctcaaatgtttggatattctcagttactggttctgtttg
gggagttctaagatatgacatgggaggcagaatatgagtgtttaaaatct
ccatgttacttatgggttcactcactgtttgttgttcaagatgtgagctc
tctgcttctgctcctgctgccctgctgtcacatcatatggacatttaaac
tttcctaggtacttttctattgctgtggaaaacaccaccaatgactagcc
actataagagagttttattgggagcttacagttcgaggggtgagtcatga
catcatggtgcag
gaattcactgtgctgttctggctggcctggagctcacgatcagatcaggc
tagccacaaacccacagccagtgcttctctggagggagagatcatgcttt
gttctcctttaccttggcattggagcaggcacatttgtgttggcagctgc
ctgtgtgtgttggtcctcactgggctgcaggctcactaccacactggtga
cagaggcactgatgagcagagctcacgtggtttggagtgcatttggagtt
gatgtttgggttctacccaaattatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatacactcttgctgtcttcag
acacttgagaagagggcatcatatcccattacagataatggaattgacat
caggacctctggaagagcagtcagtgctcttaactgctgagctatctctc
cagcccagtgtcttttttatttttacattttatacttaaggttattatta
atgtgcgtgtgtgcaagtgcatgggagtacgcaccccagtgtgcatgtgg
aggtcaaaggatagcttgctggggttggtcccctctttcactgtgggttc
ctgggctgagactcaagctgtcaggcttggcagcaagtgcttctatctgc
taaactgtgttggcctgagaatgtctcttctttataaaggtttgtttttt
ttattattttaaactatgtctctgtgtgttttgtatgtggggttgtgttg
tgacataaatgcttcaaaccaaacttgggtcctctgaaaaacaatgcttg
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146473336_146474406
seq2: B6Ng01-335C23.b_177_1209

seq1  CCTTATAGGAAACAGAAAGACAGTAATATTGGCAGCAATGTGGACTATGG  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTTATAGGAAACAGAAAGACAGTAATATTGGTAGCAATGTGGACTATGG  50

seq1  AGGCCCAATGAGGTTTCAGAGGGAACAAGTTCAGCAGCAGAGCTAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAATGAGGTTTCAGAGGGAACAAGTTCAGCAGCAGAGCTAGAGAC  100

seq1  AACACCTGTGAGATTTGGCAAAGAATTTGGCTGCCTTTTGCACTTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTGTGAGATTTGGCAAAGAATTTGGCTGCCTTTTGCACTTTTCCT  150

seq1  AAAAATTGTCTGAGAGTAAATTTAAAGTAACACACTATGTTTTTTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAAATTGTCTGAGAGTAAATTTAAAGTAACACACTATG-TTTTTTTTAT  199

seq1  GGAAACAATTTCAAGAAAGCATAATATTTAGTCTGCAACATGGTTATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAATTTCAAGAAAGCATAATATTTAGTCTGCAACATGGTTATTAT  249

seq1  TAGCAATAAGTGAAAAAGAGCAAGTGGAATAAAAGGAAATACAAATGTAG  300
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATAAATGAAAAAGAGCAAGTGGAATAAAAGGAAATACAAATGTAG  299

seq1  TTTTGAAGAGAACATGATCACCACTGAACTAAGCATTACAGCCAAGAGCT  350
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTGAAGAGAACATGATCACCACTAAACTAAGCATTACAGCCAAGAGCT  349

seq1  GAGCATAAGTGCTATTAACAAGAGCATCTCTGGGGCTGGTGAGATGGCTC  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGCATAAGTGCTATTAACAAGAGCATCTCTGGGGCTGGTGAGATGTCTC  399

seq1  AGCAGTTAAGAGCACTGGATATCCTTCAAAGGACTGGGGTTCAATTCTCA  450
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  AGCAGTTTAGAGCACTGGATGTCCTTCAAAGGACTGGGGTTCAATTCTCA  449

seq1  CCAACCATATGGAAGCTCCCAAACTGTAACTCTAACACCTTCACATGGAT  500
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACATGGAAGCTCCCAAACTGTAACTCTAACACCTTCACATGGAT  499

seq1  ATAAATGGAGGCAAAACACCCATGCAACTAAAATAAGAAATGAATAAATA  550
      ||||||||||||||||||||||||||| ||||||||||| ||        
seq2  ATAAATGGAGGCAAAACACCCATGCAAATAAAATAAGAAGTG--------  541

seq1  AATAAATAAATAAATAAATAAATAAATAAATAAGCCCCTGCTCTGCCCTG  600
                      ||||||||||||||||||||||||||||||||||
seq2  ----------------AATAAATAAATAAATAAGCCCCTGCTCTGCCCTG  575

seq1  GAACAAAGGGAAGGCTGTCCTCAGAGCAAAATCCCACTTAGCCAAGCATA  650
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAACAAAGGGAAGGCTGTCCTCAGAGCAAAATCCCACTTAGCTAAGCATA  625

seq1  CAACATGTGAAACAAAAAGTGTTGAGGAATGTTCTGCTCCTAGAAAACAT  700
      |||| |||||||||||||||||||||||| ||||||| ||||||||||||
seq2  CAACTTGTGAAACAAAAAGTGTTGAGGAACGTTCTGCCCCTAGAAAACAT  675

seq1  TATGATATGGCCAGGAAGTGGAATACAGTAGTTTGAATAGCTGTGTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATGATATGGCCAGGAAGTGGAATACAGTAGTTTGAATAGCAGTGTCCCC  725

seq1  AACAGGCTCAAATGTTTGGATATTCTCAGTTACTGGTTCTGTTTGGGGAG  800
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTCAAATGTTTGGATATTCTCAGTTACTGGTTCTGTTTGGGGAG  775

seq1  TTCTAAGATATGACATGGGAGGCAGAATATGAATGTTTAAAATCTCCATG  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCTAAGATATGACATGGGAGGCAGAATATGAGTGTTTAAAATCTCCATG  825

seq1  TTACTTAT-GGTTCACTCACTGTTTTGTGCTTGCAGTTGTTCAAGATGTG  899
      |||||||| ||||||||||||||||          |||||||||||||||
seq2  TTACTTATGGGTTCACTCACTGTTT----------GTTGTTCAAGATGTG  865

seq1  AGCTCTCTGCTTCCTGCTCCTGCTGCCCTGCCTGTCACCATCATATGGAC  949
      |||||||||||| ||||||||||||||||| |||||| ||||||||||||
seq2  AGCTCTCTGCTT-CTGCTCCTGCTGCCCTG-CTGTCA-CATCATATGGAC  912

seq1  ATTT-AACTTTCTTAGTTACTTTTCTATTGCTGT-GAAAACA-CACC-AT  995
      |||| ||||||| ||| ||||||||||||||||| ||||||| |||| ||
seq2  ATTTAAACTTTCCTAGGTACTTTTCTATTGCTGTGGAAAACACCACCAAT  962

seq1  GACCAAGGCAACTAATAAGAAAG-TTTATTGGGAGCTTACAGTTTCAGAG  1044
      ||| |  || ||| |||||| || ||||||||||||||||||||  || |
seq2  GACTA--GCCACT-ATAAGAGAGTTTTATTGGGAGCTTACAGTTCGAG-G  1008

seq1  GGTGAGTCCATGACCATCATGGTGCAG  1071
      ||||||| ||||| |||||||||||||
seq2  GGTGAGT-CATGA-CATCATGGTGCAG  1033

seq1: chr4_146721336_146722138
seq2: B6Ng01-335C23.g_64_865 (reverse)

seq1  TTCAAGTATTGCTTTTGCAGAGAACCCAAGTTTGGTTTGAAGCATTTTCT  50
      |||||| |||| |||| ||||| ||||||||||||||||||||| ||| |
seq2  TTCAAGCATTG-TTTTTCAGAGGACCCAAGTTTGGTTTGAAGCA-TTTAT  48

seq1  GTCCCAACACATACCCACATACAAAAACACACAGAGACATAGTTTAAAAT  100
      ||| |||||||  ||||||||| |||||||||||||||||||||||||||
seq2  GTCACAACACAACCCCACATAC-AAAACACACAGAGACATAGTTTAAAAT  97

seq1  AAT--AAAAAGCAAACCTTTATAAAGAAGAGACATTCTCAGGCCAACACA  148
      |||  ||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAAACAAACCTTTATAAAGAAGAGACATTCTCAGGCCAACACA  147

seq1  GTTTAGCAGATAGAAGCACTTGCTGCCAAGCCTGACAGCCTGAGTCTCAG  198
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTTAGCAGATAGAAGCACTTGCTGCCAAGCCTGACAGCTTGAGTCTCAG  197

seq1  CTCAGGAACCCACAGTGAAAGAGGGGACCAACCCCAGCAAGCTATCCTTT  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAACCCACAGTGAAAGAGGGGACCAACCCCAGCAAGCTATCCTTT  247

seq1  GACCTCCACATGCCCACTGGGGTGCGTACTCCCACGCACTTGCACACACG  298
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  GACCTCCACATGCACACTGGGGTGCGTACTCCCATGCACTTGCACACACG  297

seq1  CACATTAATAATAACCTTAAGTATAAAATGTAAAAATGAAAAAGAGACTG  348
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  CACATTAATAATAACCTTAAGTATAAAATGTAAAAATAAAAAAGACACTG  347

seq1  GGCTGGAGAGATAGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGAGATAGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGG  397

seq1  TCCTGATGTCAATTCCATTATCTGTAATGGGATATGATGCCCTCTTCTCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCTGATGTCAATTCCATTATCTGTAATGGGATATGATGCCCTCTTCTCA  447

seq1  AGTGTCTGAAGACAGCAAGAGTGTACTCATATATATATATATATATATAT  498
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  AGTGTCTGAAGACAGCAAGAGTGTATATATATATATATATATATATATAT  497

seq1  ATATATATATATATATATATATATATAAATATAATTTGGGTAGAACCCAA  548
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATAATTTGGGTAGAACCCAA  547

seq1  ACATCAACTCTAAATGCACTCCAAACCACGTGAGCTCTGCTCATCAGTGC  598
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACTCCAAATGCACTCCAAACCACGTGAGCTCTGCTCATCAGTGC  597

seq1  CTCTGTCACCAGTGTGGTAGTGAGCCTGCAGCCCAGTGAGGACCAACACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCACCAGTGTGGTAGTGAGCCTGCAGCCCAGTGAGGACCAACACA  647

seq1  CAGAGGCAGCTGCCAACACAAACGTGCCTGCTCCAATGCCAAGGTAAAGC  698
      || ||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  CACAGGCAGCTGCCAACACAAATGTGCCTGCTCCAATGCCAAGGTAAAGG  697

seq1  AGAACAAAGCATGATCTCTCCCTCCAGAGAAGCACTGGCTGTGGGTTTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAGCATGATCTCTCCCTCCAGAGAAGCACTGGCTGTGGGTTTGT  747

seq1  GGCTAGCCTGATCTGACCGTGAGCTCCAGGCCAGCCAGAATGGCACAGTG  798
      |||||||||||||||| |||||||||||||||||||||||  ||||||||
seq2  GGCTAGCCTGATCTGATCGTGAGCTCCAGGCCAGCCAGAACAGCACAGTG  797

seq1  AATTC  803
      |||||
seq2  AATTC  802