BAC Information

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BAC

Clone NameB6Ng01-335M11
Chromosome4 (Build37)
Map Location 16,740,183 - 16,873,790
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335M11.bB6Ng01-335M11.g
ACCGA120895GA120896
length1,0811,199
definitionB6Ng01-335M11.b B6Ng01-335M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,740,183 - 16,741,275)(16,872,581 - 16,873,790)
sequence
gaattcactcctaaaattcttgtatctaattatgccaaaaatacacacga
gtatacaattcataaaatatattattttagtacagtaattatgtgatcta
tcattctctagacatataactgaaggtaatggaatcagaatgccaaaaga
aaacatgtcaacactgttgttttttttctgaagcatgattcacaataact
aaatgtcattaaccttagtgtctttcaaagggtgaaaagtttttaaaaca
tgggcaatatttacattggagtactatttattattacaatgcatgtaagt
actatttttaaatgcacaatctaataaatcctggcatacaaagggaaata
ttccactgactcagtttgaatatgtttttagtttatgttcatggggtaat
ttggtagcatgtatttctgtgttccacatgtatgcagaccctacaggtta
gaggagattattagatttcctagatatgcaatacagatggatgctaactg
ccttgtgagtgctgggaaatgaggcttagtcctatttaaaagtagcagtt
ctcttacccagcgagccattctcctgtcctatggtctcaacatttacata
gaattttaatacagtgacatttcagaagcagggaataaagtagtgtttct
gaaagcctggaaataaatgaaatttgagagaaactagttcagggtaattg
aatttcaaataagtaggaagaagaagttcaagaaatttgtttttgtattt
tgcttgtgttgcatacatgttggtatcatggttgataagaatgaattaca
tacttgaacattgctgtcagagtatatttaaatgttatcaccccaataaa
ataataaatatttcacatgacagatgatattctgtaattctcttgattta
gtcatcccatagttcaagagaaatcaatcaatggtttgtctaatttaaat
acattcattttttacctgcccattaaaaatgaactacaaactacacctct
tcagttattattgtatcattggtactttgagtatgggtcttcttactatt
cctagtttatcttttacaaataccaaatttt

gaattctttcactctataaatgaagtcagtatatgaaatacttgacatga
aacaaaaatgtgatgtatattattacatatatgagacaatatcttcaggc
tctgagagccacagtagctcacagagcaagaattggcttaaacattagct
gcaccaagttttgagatttaaattaggatctgctgcttttaataaatatt
aagtggacattgcttgaacttccttgaagagtcaggcaaacagtgcagag
gtttcaagatgagcattgccaatagccttctgtaaacatattttcatcag
gttgtttctcctcctgggtgttcatgaatatgattatgcatgacatcact
tatttcattccttggtgtaactgagtatcatctattttcaattttagaaa
cattttttaaagttttttctatatatgtcagaaattgtacagcacccatt
gccttccaaaagccaatgttgaattctcagtatgcttatagaactattct
agattttctaggaagattgcagagaaaaaaataaaaggaaaaaattgtta
ataatcactcacatgtggaacatgaatgctggagcccccaaacaaaagtg
ctctcttatcctaagtgatgattttgtggggagggaagcaggcaaagcta
agccatagaaagtgggaacatcatgaactatattcatatccatataactt
caaagaaaatatcttgataaaaacgtctgccttaaaactggaaaaaatgt
agtaagattctaattcaggaagatttctcacacctaaacaagtcttaaaa
tctttgccctgctatttcattaaagtgtgtgatttccgaaggcaaaacct
tctatctcaatccctgtaatgagactagaacttgaaaatcaaaccattac
ctcttcagtcccagcacacaccaacagctatgcagtgtgtgtgtatctgg
agtactcatttgccagttgtcagtcttctgagcataggaaaggccacagc
acttgcgacaaagaaaacagaggccaccttctatgactgggagcagttat
cactctattttgcatccgcgaacaggcatgatgatttgagcatgccaagg
tatgccattaaatgtacattaagtaacacccctgcaatataaaacagaac
ttatgtgtatctgaggttgctatagctgtcattaccattccattgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_16740183_16741275
seq2: B6Ng01-335M11.b_51_1131

seq1  GAATTCACTCCTAAAATTCTTGTATCTAATTATGCCAAAAATACACACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAAAATTCTTGTATCTAATTATGCCAAAAATACACACGA  50

seq1  GTATACAATTCATAAAATATATTATTTTAGTACAGTAATTATGTGATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAATTCATAAAATATATTATTTTAGTACAGTAATTATGTGATCTA  100

seq1  TCATTCTCTAGACATATAACTGAAGGTAATGGAATCAGAATGCCAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCTAGACATATAACTGAAGGTAATGGAATCAGAATGCCAAAAGA  150

seq1  AAACATGTCAACACTGTTGTTTTTTTTCTGAAGCATGATTCACAATAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTCAACACTGTTGTTTTTTTTCTGAAGCATGATTCACAATAACT  200

seq1  AAATGTCATTAACCTTAGTGTCTTTCAAAGGGTGAAAAGTTTTTAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATTAACCTTAGTGTCTTTCAAAGGGTGAAAAGTTTTTAAAACA  250

seq1  TGGGCAATATTTACATTGGAGTACTATTTATTATTACAATGCATGTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAATATTTACATTGGAGTACTATTTATTATTACAATGCATGTAAGT  300

seq1  ACTATTTTTAAATGCACAATCTAATAAATCCTGGCATACAAAGGGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTTAAATGCACAATCTAATAAATCCTGGCATACAAAGGGAAATA  350

seq1  TTCCACTGACTCAGTTTGAATATGTTTTTAGTTTATGTTCATGGGGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGACTCAGTTTGAATATGTTTTTAGTTTATGTTCATGGGGTAAT  400

seq1  TTGGTAGCATGTATTTCTGTGTTCCACATGTATGCAGACCCTACAGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGCATGTATTTCTGTGTTCCACATGTATGCAGACCCTACAGGTTA  450

seq1  GAGGAGATTATTAGATTTCCTAGATATGCAATACAGATGGATGCTAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATTATTAGATTTCCTAGATATGCAATACAGATGGATGCTAACTG  500

seq1  CCTTGTGAGTGCTGGGAAATGAGGCTTAGTCCTATTTAAAAGTAGCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGAGTGCTGGGAAATGAGGCTTAGTCCTATTTAAAAGTAGCAGTT  550

seq1  CTCTTACCCAGCGAGCCATTCTCCTGTCCTATGGTCTCAACATTTACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCCAGCGAGCCATTCTCCTGTCCTATGGTCTCAACATTTACATA  600

seq1  GAATTTTAATACAGTGACATTTCAGAAGCAGGGAATAAAGTAGTGTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAATACAGTGACATTTCAGAAGCAGGGAATAAAGTAGTGTTTCT  650

seq1  GAAAGCCTGGAAATAAATGAAATTTGAGAGAAACTAGTTCAGGGTAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTGGAAATAAATGAAATTTGAGAGAAACTAGTTCAGGGTAATTG  700

seq1  AATTTCAAATAAGTAGGAAGAAGAAGTTCAAGAAATTTGTTTTTGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAATAAGTAGGAAGAAGAAGTTCAAGAAATTTGTTTTTGTATTT  750

seq1  TGCTTGTGTTGCATACATGTTGGTATCATGGTTGATAAGAATGAATTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGTTGCATACATGTTGGTATCATGGTTGATAAGAATGAATTACA  800

seq1  TACTTGAACATTGCTGTCAGAGTATATTTAAATGTTATCACCCCAATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAACATTGCTGTCAGAGTATATTTAAATGTTATCACCCCAATAAA  850

seq1  ATAATAAATATTTCACATGACAGATGATATTCTGTAATTCTCTTGATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATATTTCACATGACAGATGATATTCTGTAATTCTCTTGATTTA  900

seq1  GTCATCCCATAGTTCAAAGAGAAATCAATCAATGGTTTGTCTAATTTAAA  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTCATCCCATAGTTC-AAGAGAAATCAATCAATGGTTTGTCTAATTTAAA  949

seq1  TACATTCATTTTTTTACCTGCCCATTAAAAATGAAAACAAAACAAAACAA  1000
      |||||||| ||||||||||||||||||||||||       ||| | | | 
seq2  TACATTCA-TTTTTTACCTGCCCATTAAAAATG-------AACTACAAAC  991

seq1  AACACCTCCTTTCAGTTATATGTTAT-TCATTGTTACTTTGAGTATTGGG  1049
       |||||||  ||||||||| | || | |||||| ||||||||||| ||||
seq2  TACACCTC--TTCAGTTAT-TATTGTATCATTGGTACTTTGAGTA-TGGG  1037

seq1  TCT--CTACTA-TCCTAGTTTAATCTTTTACAAATAACCAAAATTTT  1093
      |||   ||||| ||||||||| ||||||||||||| |||||| ||| 
seq2  TCTTCTTACTATTCCTAGTTT-ATCTTTTACAAAT-ACCAAATTTT-  1081


seq1: chr4_16872581_16873790
seq2: B6Ng01-335M11.g_66_1264 (reverse)

seq1  GTCACATTGGAA--GTAATGACAGCTATAGCAACCTCAG-TACATAAAGG  47
      |||||| |||||  ||||||||||||||||||||||||| |||| | | |
seq2  GTCACAATGGAATGGTAATGACAGCTATAGCAACCTCAGATACACATAAG  50

seq1  TTACTGTTTTATATTGCAGGGGTGTTACTATATGTACAATTTAAATGCCA  97
      || ||||||||||||||||||||||||||  |||||||  || |||| ||
seq2  TT-CTGTTTTATATTGCAGGGGTGTTACTTAATGTACA--TTTAATGGCA  97

seq1  CTACTTGGGCATTGCTCAAAATCATCATGCCTGTCTGCGGATGCAAAATA  147
       ||| | |||| ||||| ||||||||||||||||  ||||||||||||||
seq2  -TACCTTGGCA-TGCTC-AAATCATCATGCCTGTTCGCGGATGCAAAATA  144

seq1  GAGTGATTACCTTGCTCCCAGTTCATAGAAGGTTGGCCTCTGTTTTTCTT  197
      ||||||| ||  ||||||||| |||||||||| ||||||||| |||||||
seq2  GAGTGATAAC--TGCTCCCAG-TCATAGAAGG-TGGCCTCTG-TTTTCTT  189

seq1  TGTCGCAAGTGCTGTGGCCTTTCCTATTGCTCAGAAGACTGACAACTGGC  247
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTCGCAAGTGCTGTGGCCTTTCCTA-TGCTCAGAAGACTGACAACTGGC  238

seq1  AAATGAGTACTCCAGATACCACACCACACTGCATAGCTGTTGGTGTGTGC  297
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  AAATGAGTACTCCAGATA-CACA-CACACTGCATAGCTGTTGGTGTGTGC  286

seq1  TGGGACTGAAGAGGTAATGGTTTGATTTTCAAGTTCTAGTCTCATTACAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTGAAGAGGTAATGGTTTGATTTTCAAGTTCTAGTCTCATTACAG  336

seq1  GGATTGAGATAGAAGGTTTTGCCTTCGGAAATCACACACTTTAATGAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAGATAGAAGGTTTTGCCTTCGGAAATCACACACTTTAATGAAAT  386

seq1  AGCAGGGCAAAGATTTTAAGACTTGTTTAGGTGTGAGAAATCTTCCTGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCAAAGATTTTAAGACTTGTTTAGGTGTGAGAAATCTTCCTGAA  436

seq1  TTAGAATCTTACTACATTTTTTCCAGTTTTAAGGCAGACGTTTTTATCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCTTACTACATTTTTTCCAGTTTTAAGGCAGACGTTTTTATCAA  486

seq1  GATATTTTCTTTGAAGTTATATGGATATGAATATAGTTCATGATGTTCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTCTTTGAAGTTATATGGATATGAATATAGTTCATGATGTTCCC  536

seq1  ACTTTCTATGGCTTAGCTTTGCCTGCTTCCCTCCCCACAAAATCATCACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTATGGCTTAGCTTTGCCTGCTTCCCTCCCCACAAAATCATCACT  586

seq1  TAGGATAAGAGAGCACTTTTGTTTGGGGGCTCCAGCATTCATGTTCCACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAAGAGAGCACTTTTGTTTGGGGGCTCCAGCATTCATGTTCCACA  636

seq1  TGTGAGTGATTATTAACAATTTTTTCCTTTTATTTTTTTCTCTGCAATCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGATTATTAACAATTTTTTCCTTTTATTTTTTTCTCTGCAATCT  686

seq1  TCCTAGAAAATCTAGAATAGTTCTATAAGCATACTGAGAATTCAACATTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAAAATCTAGAATAGTTCTATAAGCATACTGAGAATTCAACATTG  736

seq1  GCTTTTGGAAGGCAATGGGTGCTGTACAATTTCTGACATATATAGAAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGAAGGCAATGGGTGCTGTACAATTTCTGACATATATAGAAAAA  786

seq1  ACTTTAAAAAATGTTTCTAAAATTGAAAATAGATGATACTCAGTTACACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAAAATGTTTCTAAAATTGAAAATAGATGATACTCAGTTACACC  836

seq1  AAGGAATGAAATAAGTGATGTCATGCATAATCATATTCATGAACACCCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGAAATAAGTGATGTCATGCATAATCATATTCATGAACACCCAG  886

seq1  GAGGAGAAACAACCTGATGAAAATATGTTTACAGAAGGCTATTGGCAATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAACAACCTGATGAAAATATGTTTACAGAAGGCTATTGGCAATG  936

seq1  CTCATCTTGAAACCTCTGCACTGTTTGCCTGACTCTTCAAGGAAGTTCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTGAAACCTCTGCACTGTTTGCCTGACTCTTCAAGGAAGTTCAA  986

seq1  GCAATGTCCACTTAATATTTATTAAAAGCAGCAGATCCTAATTTAAATCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTCCACTTAATATTTATTAAAAGCAGCAGATCCTAATTTAAATCT  1036

seq1  CAAAACTTGGTGCAGCTAATGTTTAAGCCAATTCTTGCTCTGTGAGCTAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTGGTGCAGCTAATGTTTAAGCCAATTCTTGCTCTGTGAGCTAC  1086

seq1  TGTGGCTCTCAGAGCCTGAAGATATTGTCTCATATATGTAATAATATACA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCTCAGAGCCTGAAGATATTGTCTCATATATGTAATAATATACA  1136

seq1  TCACATTTTTGTTTCATGTCAAGTATTTCATATACTGACTTCATTTATAG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTTTGTTTCATGTCAAGTATTTCATATACTGACTTCATTTATAG  1186

seq1  AGTGAAAGAATTC  1210
      |||||||||||||
seq2  AGTGAAAGAATTC  1199


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