BAC Information

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BAC

Clone NameB6Ng01-335N17
Chromosome4 (Build37)
Map Location 22,072,146 - 22,192,291
singlet/doubletdoublet
Overlap geneLOC100040379
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik
Downstream geneFbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335N17.bB6Ng01-335N17.g
ACCGA120954GA120955
length1,078934
definitionB6Ng01-335N17.b B6Ng01-335N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,191,227 - 22,192,291)(22,072,146 - 22,072,994)
sequence
gaattctgtctttaaaaaacaaaaacaaaaaaaaaaaacaaaaaaaaagt
cattccaatgagtgggcagcacccactgacagcgcaggcaaaagggttgc
taggaatgttgattgctgggacactaaagcagctagccactctctacatt
tagtgtgtgtgtaggcacacatgcccttgtgcactcatgtgtgtgtgtgt
gagagagagagagaggagagagagagagacagagagacagagagaccgag
acagagagagcgagcgacagagaccaggacacccatgtagaagtcagaga
acaatctgtggaagttaattttgtccttctgccatgtgggtcccagatat
tgagctcaggttttcaggactggtggcaagctccctcatcacttgagcca
cctcaccaggacctttctttttacatggctggattggtaatcctgataag
catgggccactggcaagtcttatataaccaaatactatctggagaacaat
ttccaatgtctccaaagtcagaggttcaatcatcaaatgacttttatttc
atggttgttagggattacttcaaagtaggtttctcacgtgagatgacccc
tttttaaaattgagcatacttgcaagtagtggaagcctatctatgtcctt
tccattagagaaatcccatagaaatagctgttgttcttttttaacgattt
attttcatttttaataatgagcatacttatccctatgaactttctgacag
aaagaaagacagcacttttgcaattgtttataaataacatagaagatcta
ttaacctaatttttacatgtaagctttcccctcctggttgaatgcttttc
tctttcattagagtcaacttttctatgaccttttaaattcagttagaaaa
gttaatcttctggtttatctggaccaattgggcttctgaaacacctccag
tgaccaaaccattaatttcgagttcagcttttaattggttagaatagtaa
ttggctgccagaatccaagtagctgtcagagtttgcctgctaagcagtct
ggtgctttccttggacacattccaagtc
gaattcagtaagaaggttatctattcagtaacattcaaatttacttctag
tagagcctgtgaaactaattaggcattacaaagaacagagcaggaatagc
ttggggctggtctgtagagtgtttacttgggacaatagccagtcttaccc
agacaagtgaattcacaatggcctagcaaataggtgggtttaccatgaaa
gagttagggaatccccctgagacaggtttcttcactaggcccaaagaaac
agcataaccaggcatttactaagaacccctggtggcgggcttaacaatag
actagcattacacctggctcccttcttagtggcagcagcctggtccccac
cttcttttgatgtatacattccttttgtattgtgtcactgtaactcggtg
gatgtatctcacctggtttcttgttgctctcctgtataaaaagtatgatg
ctcaacttgaaaaattacattcagattctacacaatctctcgtgtgattc
tgtctgtcattcattcgcccactcctagtccacctgcaaccagagacccg
ttctacacagacagggaccaaaaagggtctgcagcacgatagaaagacat
aaatggaaaaaaaattccagaaaagatttccaaaaacttccccaaaagga
gaaaattccttgtcctggagatttaggaaagatgatttgctacatgtctg
cccaacatggaagcatccaggccaggcatctgcagatagccaagtgtcaa
aacgaatgaggcacaatggtaatcctcatgaactctttcttcctcatatt
gctctggtcatggtgtttcagaacaacactcatatatgcatataaggtca
agtattaagaatgcaattaagctgggcatgggtggcgcatgctttaatcc
cagcacttgtgagcagaggcagtggagtctgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_22191227_22192291
seq2: B6Ng01-335N17.b_45_1122 (reverse)

seq1  GACTTGGAATGTGTCCA--GAAAGCA-CAGACTGGCTAGCAGGCAAA-TC  46
      |||||||||||||||||  ||||||| |||||||  ||||||||||| ||
seq2  GACTTGGAATGTGTCCAAGGAAAGCACCAGACTGCTTAGCAGGCAAACTC  50

seq1  TGACAGCTAC-TGGA-TCTTGCAG-CAATAAC-ATTCTAACCAATTAAAA  92
      |||||||||| |||| ||| |||| |||| || |||||||||||||||||
seq2  TGACAGCTACTTGGATTCTGGCAGCCAATTACTATTCTAACCAATTAAAA  100

seq1  GCTGAACTCGAAA-TAATGGTTT-GTCACTGGGAGGTGTTTCAGAAG-CC  139
      ||||||||||||| ||||||||| |||||| |||||||||||||||| ||
seq2  GCTGAACTCGAAATTAATGGTTTGGTCACT-GGAGGTGTTTCAGAAGCCC  149

seq1  AATTGGTCCAGATTAACCAGAAGATTAACTTTTCTAACTGAATTT-AAAG  188
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  AATTGGTCCAGATAAACCAGAAGATTAACTTTTCTAACTGAATTTAAAAG  199

seq1  GTCATAG-AAAGTTGACTCTAATGAAAGAGAAAAGCATTCAACCAGGAGG  237
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGAAAAGTTGACTCTAATGAAAGAGAAAAGCATTCAACCAGGAGG  249

seq1  GGAAAGCTTACATGTAAAAATTAGGTTAATAGATCTTCTATGTTATTTAT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCTTACATGTAAAAATTAGGTTAATAGATCTTCTATGTTATTTAT  299

seq1  AAACAATTGCAAAAGTGCTGTCTTTCTTTCTGTCAG-AAGTTCATAGGGA  336
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAACAATTGCAAAAGTGCTGTCTTTCTTTCTGTCAGAAAGTTCATAGGGA  349

seq1  TAAGTATGCTCATTATTAAAAATGAAAATAAATCGTTAAAAAAGAACAAC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATGCTCATTATTAAAAATGAAAATAAATCGTTAAAAAAGAACAAC  399

seq1  AGCTATTTCTATGGGATTTCTCTAATGGAAAGGACATAGATAGGCTTCCA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTCTATGGGATTTCTCTAATGGAAAGGACATAGATAGGCTTCCA  449

seq1  CTACTTGCAAGTATGCTCAATTTTAAAAAGGGGTCATCTCACGTGAGAAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGCAAGTATGCTCAATTTTAAAAAGGGGTCATCTCACGTGAGAAA  499

seq1  CCTACTTTGAAGTAATCCCTAACAACCATGAAATAAAAGTCATTTGATGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTGAAGTAATCCCTAACAACCATGAAATAAAAGTCATTTGATGA  549

seq1  TTGAACCTCTGACTTTGGAGACATTGGAAATTGTTCTCCAGATAGTATTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTCTGACTTTGGAGACATTGGAAATTGTTCTCCAGATAGTATTT  599

seq1  GGTTATATAAGACTTGCCAGTGGCCCATGCTTATCAGGATTACCAATCCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATATAAGACTTGCCAGTGGCCCATGCTTATCAGGATTACCAATCCA  649

seq1  GCCATGTAAAAAGAAAGGTCCTGGTGAGGTGGCTCAAGTGATGAGGGAGC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTAAAAAGAAAGGTCCTGGTGAGGTGGCTCAAGTGATGAGGGAGC  699

seq1  TTGCCACCAGTCCTGAAAACCTGAGCTCAATATCTGGGACCCACATGGCA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCAGTCCTGAAAACCTGAGCTCAATATCTGGGACCCACATGGCA  749

seq1  GAAGGACAAAATTAACTTCCACAGATTGTTCTCTGACTTCTACATGGGTG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACAAAATTAACTTCCACAGATTGTTCTCTGACTTCTACATGGGTG  799

seq1  TCCTGGTCTCTGTCGCTCGCTCTCTCTGTCTCGGTCTCTCTGTCTCTCTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTCTCTGTCGCTCGCTCTCTCTGTCTCGGTCTCTCTGTCTCTCTG  849

seq1  TCTCTCTCTCTCTCCTCTCTCTCTCTCTCACACACACACACATGAGTGCA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCCTCTCTCTCTCTCTCACACACACACACATGAGTGCA  899

seq1  CAAGGGCATGTGTGCCTACACACACACTAAATGTAGAGAGTGGCTAGCTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCATGTGTGCCTACACACACACTAAATGTAGAGAGTGGCTAGCTG  949

seq1  CTTTAGTGTCCCAGCAATCAACATTCCTAGCAACCCTTTTGCCTGCGCTG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTGTCCCAGCAATCAACATTCCTAGCAACCCTTTTGCCTGCGCTG  999

seq1  TCAGTGGGTGCTGCCCACTCATTGGAATGACTTTTTTTTTGTTTTTTTTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGTGCTGCCCACTCATTGGAATGACTTTTTTTTTGTTTTTTTTT  1049

seq1  TTTGTTTTTGTTTTTTAAAGACAGAATTC  1065
      |||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTTTAAAGACAGAATTC  1078

seq1: chr4_22072146_22072994
seq2: B6Ng01-335N17.g_157_1002

seq1  AGCAGGAATAGCTTGGGGCTGGTCTGTAGAGTGTTTACTTGGGACAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAATAGCTTGGGGCTGGTCTGTAGAGTGTTTACTTGGGACAATAG  50

seq1  CCAGTCTTACCCAGACAAGTGAATTCACAATGGCCTAGCAAATAGGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTACCCAGACAAGTGAATTCACAATGGCCTAGCAAATAGGTGGG  100

seq1  TTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTTCTTCACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTTCTTCACTAG  150

seq1  GCCCAAAGAAACAGCATAACCAGGCATTTACTAAGAACCCCTGGTGGCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAGAAACAGCATAACCAGGCATTTACTAAGAACCCCTGGTGGCGG  200

seq1  GCTTAACAATAGACTAGCATTACACCTGGCTCCCTTCTTAGTGGCAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACAATAGACTAGCATTACACCTGGCTCCCTTCTTAGTGGCAGCAG  250

seq1  CCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTTTGTATTGTGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTTTGTATTGTGTCAC  300

seq1  TGTAACTCGGTGGATGTATCTCACCTGGTTTCTTGTTGCTCTCCTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCGGTGGATGTATCTCACCTGGTTTCTTGTTGCTCTCCTGTATA  350

seq1  AAAAGTATGATGCTCAACTTGAAAAATTACATTCAGATTCTACACAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATGATGCTCAACTTGAAAAATTACATTCAGATTCTACACAATCT  400

seq1  CTCGTGTGATTCTGTCTGTCATTCATTCGCCCACTCCTAGTCCACCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGTGATTCTGTCTGTCATTCATTCGCCCACTCCTAGTCCACCTGCA  450

seq1  ACCAGAGACCCGTTCTACACAGACAGGGACCAAAAAGGGTCTGCAGCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGACCCGTTCTACACAGACAGGGACCAAAAAGGGTCTGCAGCACG  500

seq1  ATAGAAAGACATAAATGGAAAAAAAATTCCAGAAAAGATTTCCAAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGACATAAATGGAAAAAAAATTCCAGAAAAGATTTCCAAAAACT  550

seq1  TCCCCAAAAGGAGAAAATTCCTTGTCCTGGAGATTTAGGAAAGATGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAAGGAGAAAATTCCTTGTCCTGGAGATTTAGGAAAGATGATTT  600

seq1  GCTACATGTCTGCCCAACATGGAAGCATCCAGGCCAGGCATCTGCAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATGTCTGCCCAACATGGAAGCATCCAGGCCAGGCATCTGCAGATA  650

seq1  GCCAAGTGTCAAAACGAATGAGGCACAATGGTAATCCTCATGAACTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTGTCAAAACGAATGAGGCACAATGGTAATCCTCATGAACTCTTT  700

seq1  CTTCCTCATATTGCTCTGGTCATGGTGTTTCAGAACAACACTCATATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCATATTGCTCTGGTCATGGTGTTTCAGAACAACACTCATATATG  750

seq1  CATATAAGGTCAAGTATTAAGAATGCAATTAAGCTGGGCAT-GGTGGCGC  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATATAAGGTCAAGTATTAAGAATGCAATTAAGCTGGGCATGGGTGGCGC  800

seq1  ATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGAGTTCTGAGT  849
      ||| |||||||||||||||||| || ||||||||| |||||| |||||||
seq2  ATG-CTTTAATCCCAGCACTTGTGA-GCAGAGGCA-GTGGAG-TCTGAGT  846