BAC Information

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BAC

Clone NameB6Ng01-336A21
Chromosome4 (Build37)
Map Location 41,840,252 - 41,998,088
singlet/doubletdoublet
Overlap geneLOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544
Upstream geneLOC100039668, Spink4, Bag1, Chmp5, Nfx1, Aqp7, Aqp3, Nol6, Ube2r2, Ubap2, Wdr40a, Ubap1, Kif24, Nudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik, Dnaic1, 2310040A07Rik, LOC100042420, Cntfr, 2810432D09Rik, Dctn3, OTTMUSG00000006683, Oprs1, Galt, Il11ra1, Ccl27, LOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580
Downstream geneLOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336A21.bB6Ng01-336A21.g
ACCGA121099GA121100
length1,1501,117
definitionB6Ng01-336A21.b B6Ng01-336A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,840,252 - 41,841,405)(41,996,971 - 41,998,088)
sequence
gaattccacctgcagaagcggctgattcaccttcgctgggggctgcccca
gaggatccagcgctccataaatatgctgctctcctcaacagacctgcagt
ccctgccctgcggtggcagtaggctacctaatgtgagcatctcacagcca
gggaaaccagaggcctatgggtctggtgatacgttcttacccacagcggg
caaaggaacaacccccatgccacacttgtttgccaaggcacaggaaatgt
tgaaaagccatgataccaaatgtgaacagatccgggagggcaaggtcccg
gcctgtgtccaaagcgcctggaaaggcagaattcctggggatttggcagc
agggactttattcccaaacattccacaaggtcagcccctggagcttcagg
cagaaaacaaccctgacctacatcaagaagctgtttcctggaaaccaatg
gaccttgaccaggaggctcaggccttttcaggtgttttcattgaacactg
taggcgaccccaagccctgtctgaggaaaccattaagaaactggagacaa
ctctgagacataagtatttggccttcctgtcaggcctgcaggccctttac
tgcatggccccaactaaagcaacatccccaactgttgaccaatctgtaat
cacaactatgccctggtctgtcaaaagcccacagaagcccctatctcaga
agtctccacttgaagccctatgcctgagtgggcttgagccctgtactcaa
gatgacaaggagacttctgcaaacattgcagaagagttccagcatggagc
tcaggggcatggaaggacagagaaggtgcctccagagagacagcctctcc
tgaatagaccctactcattagacacagagatcatggagagagtgagtttc
tacctgaaaaggaaggctctggatataaagttgggaatttctctaaaaga
gagtgtgttccagagccaactgcaacagacttggagagtgaatctgtcag
gagcctcctcgggagttccacgggaaagcacactgctacaagggaccgcc
caccttatgtcacgttcctgtagcccaagatccagaataaagattgccta
aacagccagctactgcatgcagttgtgttcaaggagcaaacatcgagttc

gaattccctgcagtacactcaggtgtcagttttgcctgagtggaagcccc
tgtgggtaagggaactttccggtccacaaggggcttgttgagctgtggtc
tcctgctgcccctggcaacaccacctgtggcctctcagttgaagacagca
tctttctaacagctgtagggctcagtcctcaaaaattgctatgaggttca
gatgtccatcacaggcaccagttgtggcttgtgcttctgaccaatagtct
acacatgcagtagttcccatgacccttttgtcagtttgcagctgcaagac
ctacccagcactgcagccaacagcctggggtaggaagagctcccatatat
ggtaatcagaggttgtgcaagctctgagttgtgagtggagagtgggaaat
atttgactttcctatatccttacagtgtgccattttctgtcagaatctcc
agggatactgtaagctttaccagaagagactgcagaaagtagatcctcaa
agtggatctcaatcctgggattggttgcctttatatatgagcgcacagat
aatctctctgcatggagacagaggacccaggacatcaggaggttgcacaa
ttgtcatagtcactcagaacatcactagtgacacacagggtggaacttga
caccaggatctcagttggaaaccttcccttctgcgtattctctcttgaag
tcccaagagacacagacagagaatagtggataggcagaggttattatcaa
gtagagtagacgctcaacggagagagcagactgtggccaaagacactgtt
gctcctatctatgctctaggcagatcttatactattttccaagctctctg
taataaactagctttcctaagggacttggccctatctacatgactgaaag
acctgctcggttctttatcagaaagcctcttgtcatcttaaagtgtaggg
tttctagagcctggtttggatattttcccactggcaatcttttcggtcag
ctcagagtcacatcttcgtccttagggcagagctattgactttgtctagt
tcttctcaatgatacctaaagttcttctatcttcggttcgtggattcatg
gaactaaaggaaggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_41840252_41841405
seq2: B6Ng01-336A21.b_45_1194

seq1  GAATTCCACCTGCAGAAGCGGCTGATTCACCTTCGCTGGGGGCTGCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTGCAGAAGCGGCTGATTCACCTTCGCTGGGGGCTGCCCCA  50

seq1  GAGGATCCAGCGCTCCATAAATATGCTGCTCTCCTCAACAGACCTGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCCAGCGCTCCATAAATATGCTGCTCTCCTCAACAGACCTGCAGT  100

seq1  CCCTGCCCTGCGGTGGCAGTAGGCTACCTAATGTGAGCATCTCACAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCCTGCGGTGGCAGTAGGCTACCTAATGTGAGCATCTCACAGCCA  150

seq1  GGGAAACCAGAGGCCTATGGGTCTGGTGATACGTTCTTACCCACAGCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACCAGAGGCCTATGGGTCTGGTGATACGTTCTTACCCACAGCGGG  200

seq1  CAAAGGAACAACCCCCATGCCACACTTGTTTGCCAAGGCACAGGAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAACAACCCCCATGCCACACTTGTTTGCCAAGGCACAGGAAATGT  250

seq1  TGAAAAGCCATGATACCAAATGTGAACAGATCCGGGAGGGCAAGGTCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCCATGATACCAAATGTGAACAGATCCGGGAGGGCAAGGTCCCG  300

seq1  GCCTGTGTCCAAAGCGCCTGGAAAGGCAGAATTCCTGGGGATTTGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTCCAAAGCGCCTGGAAAGGCAGAATTCCTGGGGATTTGGCAGC  350

seq1  AGGGACTTTATTCCCAAACATTCCACAAGGTCAGCCCCTGGAGCTTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTTATTCCCAAACATTCCACAAGGTCAGCCCCTGGAGCTTCAGG  400

seq1  CAGAAAACAACCCTGACCTACATCAAGAAGCTGTTTCCTGGAAACCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACAACCCTGACCTACATCAAGAAGCTGTTTCCTGGAAACCAATG  450

seq1  GACCTTGACCAGGAGGCTCAGGCCTTTTCAGGTGTTTTCATTGAACACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGACCAGGAGGCTCAGGCCTTTTCAGGTGTTTTCATTGAACACTG  500

seq1  TAGGCGACCCCAAGCCCTGTCTGAGGAAACCATTAAGAAACTGGAGACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGACCCCAAGCCCTGTCTGAGGAAACCATTAAGAAACTGGAGACAA  550

seq1  CTCTGAGACATAAGTATTTGGCCTTCCTGTCAGGCCTGCAGGCCCTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGACATAAGTATTTGGCCTTCCTGTCAGGCCTGCAGGCCCTTTAC  600

seq1  TGCATGGCCCCAACTAAAGCAACATCCCCAACTGTTGACCAATCTGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGCCCCAACTAAAGCAACATCCCCAACTGTTGACCAATCTGTAAT  650

seq1  CACAACTATGCCCTGGTCTGTCAAAAGCCCACAGAAGCCCCTATCTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTATGCCCTGGTCTGTCAAAAGCCCACAGAAGCCCCTATCTCAGA  700

seq1  AGTCTCCACTTGAAGCCCTATGCCTGAGTGGGCTTGAGCCCTGTACTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCACTTGAAGCCCTATGCCTGAGTGGGCTTGAGCCCTGTACTCAA  750

seq1  GATGACAAGGAGACTTCTGCAAACATTGCAGAAGAGTTCCAGCATGGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAAGGAGACTTCTGCAAACATTGCAGAAGAGTTCCAGCATGGAGC  800

seq1  TCAGGGGCATGGAAGGACAGAGAAGGTGCCTCCAGAGAGACAGCCTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGCATGGAAGGACAGAGAAGGTGCCTCCAGAGAGACAGCCTCTCC  850

seq1  TGAATAGACCCTACTCATTAGACACAGAGATCATGGAGAGAGTGAGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGACCCTACTCATTAGACACAGAGATCATGGAGAGAGTGAGTTTC  900

seq1  TACCTGAAAAGGAAGGCTCTGGATATAAAGTTGGGAATTTCTCTAAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAAAAGGAAGGCTCTGGATATAAAGTTGGGAATTTCTCTAAAAGA  950

seq1  GAGTGTGTTCCAAGAGCCAACTGCAACAGACTTGGAGAGTGAATCTGTTC  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  GAGTGTGTTCC-AGAGCCAACTGCAACAGACTTGGAGAGTGAATCTG-TC  998

seq1  AGGAGCCT-CTCGGGAG-TCCACGGGAAAGCACACTGCTAC-AGGGACCG  1047
      |||||||| |||||||| ||||||||||||||||||||||| ||||||||
seq2  AGGAGCCTCCTCGGGAGTTCCACGGGAAAGCACACTGCTACAAGGGACCG  1048

seq1  CCCACCTTATGTCACGTTCCTGTAGCCCCAGATCCAG-ATAAGGTCTGCC  1096
      |||||||||||||||||||||||||||| |||||||| |||| |  ||||
seq2  CCCACCTTATGTCACGTTCCTGTAGCCCAAGATCCAGAATAAAGATTGCC  1098

seq1  TTAAACAGCCAGCTACTGCAGTGCAGGTTGTGTTTCAGGAGCAAAACCAA  1146
       ||||||||||||||||||| |||| ||||||||  |||||||||    |
seq2  -TAAACAGCCAGCTACTGCA-TGCA-GTTGTGTTCAAGGAGCAAA---CA  1142

seq1  CCGAGTTC  1154
       |||||||
seq2  TCGAGTTC  1150

seq1: chr4_41996971_41998088
seq2: B6Ng01-336A21.g_68_1184 (reverse)

seq1  GCTCCCTCCTTTATAGTCCATGAAACCAAGGACCG-AGATAGAAGGACTT  49
      ||||| |||||||   |||||||| ||| | |||| ||||||||| ||||
seq2  GCTCCTTCCTTTA-GTTCCATGAATCCACGAACCGAAGATAGAAGAACTT  49

seq1  TAGGTATCATTGAGAAGAACTAGACAAAGTC-ATAGCTCTGGCCCTAGGA  98
      ||||||||||||||||||||||||||||||| ||||||||| ||  ||||
seq2  TAGGTATCATTGAGAAGAACTAGACAAAGTCAATAGCTCTGCCCTAAGGA  99

seq1  CG-AGATGTGACCTCCTGAGCTGA-CGAAAAGATTGCCAGTGGGAAAATA  146
      || |||||||||   ||||||||| |||||||||||||||||||||||||
seq2  CGAAGATGTGAC--TCTGAGCTGACCGAAAAGATTGCCAGTGGGAAAATA  147

seq1  TCCAAACCAGGCTCTAGAAACCCTACACCTTTTAAGATGACAAGAGGCTT  196
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  TCCAAACCAGGCTCTAGAAACCCTACAC--TTTAAGATGACAAGAGGCTT  195

seq1  TCTGATAAAGAACCGAGCAGGTCTTTCAGTCATGTAGATAGGGCCAAGTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAAAGAACCGAGCAGGTCTTTCAGTCATGTAGATAGGGCCAAGTC  245

seq1  CCTTAGGAAAGCTAGTTTATTACAGAGAGCTTGGAAAATAGTATAAGATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGAAAGCTAGTTTATTACAGAGAGCTTGGAAAATAGTATAAGATC  295

seq1  TGCCTAGAGCATAGATAGGAGCAACAGTGTCTTTGGCCACAGTCTGCTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGAGCATAGATAGGAGCAACAGTGTCTTTGGCCACAGTCTGCTCT  345

seq1  CTCCGTTGAGCGTCTACTCTACTTGATAATAACCTCTGCCTATCCACTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTGAGCGTCTACTCTACTTGATAATAACCTCTGCCTATCCACTAT  395

seq1  TCTCTGTCTGTGTCTCTTGGGACTTCAAGAGAGAATACGCAGAAGGGAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTGTGTCTCTTGGGACTTCAAGAGAGAATACGCAGAAGGGAAG  445

seq1  GTTTCCAACTGAGATCCTGGTGTCAAGTTCCACCCTGTGTGTCACTAGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAACTGAGATCCTGGTGTCAAGTTCCACCCTGTGTGTCACTAGTG  495

seq1  ATGTTCTGAGTGACTATGACAATTGTGCAACCTCCTGATGTCCTGGGTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGAGTGACTATGACAATTGTGCAACCTCCTGATGTCCTGGGTCC  545

seq1  TCTGTCTCCATGCAGAGAGATTATCTGTGCGCTCATATATAAAGGCAACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCCATGCAGAGAGATTATCTGTGCGCTCATATATAAAGGCAACC  595

seq1  AATCCCAGGATTGAGATCCACTTTGAGGATCTACTTTCTGCAGTCTCTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGGATTGAGATCCACTTTGAGGATCTACTTTCTGCAGTCTCTTC  645

seq1  TGGTAAAGCTTACAGTATCCCTGGAGATTCTGACAGAAAATGGCACACTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGCTTACAGTATCCCTGGAGATTCTGACAGAAAATGGCACACTG  695

seq1  TAAGGATATAGGAAAGTCAAATATTTCCCACTCTCCACTCACAACTCAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATATAGGAAAGTCAAATATTTCCCACTCTCCACTCACAACTCAGA  745

seq1  GCTTGCACAACCTCTGATTACCATATATGGGAGCTCTTCCTACCCCAGGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACAACCTCTGATTACCATATATGGGAGCTCTTCCTACCCCAGGC  795

seq1  TGTTGGCTGCAGTGCTGGGTAGGTCTTGCAGCTGCAAACTGACAAAAGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTGCAGTGCTGGGTAGGTCTTGCAGCTGCAAACTGACAAAAGGG  845

seq1  TCATGGGAACTACTGCATGTGTAGACTATTGGTCAGAAGCACAAGCCACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGAACTACTGCATGTGTAGACTATTGGTCAGAAGCACAAGCCACA  895

seq1  ACTGGTGCCTGTGATGGACATCTGAACCTCATAGCAATTTTTGAGGACTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGCCTGTGATGGACATCTGAACCTCATAGCAATTTTTGAGGACTG  945

seq1  AGCCCTACAGCTGTTAGAAAGATGCTGTCTTCAACTGAGAGGCCACAGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTACAGCTGTTAGAAAGATGCTGTCTTCAACTGAGAGGCCACAGGT  995

seq1  GGTGTTGCCAGGGGCAGCAGGAGACCACAGCTCAACAAGCCCCTTGTGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGCCAGGGGCAGCAGGAGACCACAGCTCAACAAGCCCCTTGTGGA  1045

seq1  CCGGAAAGTTCCCTTACCCACAGGGGCTTCCACTCAGGCAAAACTGACAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAAGTTCCCTTACCCACAGGGGCTTCCACTCAGGCAAAACTGACAC  1095

seq1  CTGAGTGTACTGCAGGGAATTC  1118
      ||||||||||||||||||||||
seq2  CTGAGTGTACTGCAGGGAATTC  1117