BAC Information

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BAC

Clone NameB6Ng01-336B04
Chromosome5 (Build37)4 (Build37)
Map Location 54,705,838 - 54,706,36559,386,090 - 59,387,272
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336B04.bB6Ng01-336B04.g
ACCGA121113GA121114
length1,0191,206
definitionB6Ng01-336B04.b B6Ng01-336B04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,705,838 - 54,706,365)(59,386,090 - 59,387,272)
sequence
gaattctgtggtaagagtacgtaacagcaggtataaatgtcatgtcaatt
cacaccatacctttgctgctttgaaactacatagaaaactgagtgcttac
agcacagattgtatagtccaatggcatgagatatttagtctctgaccctt
caaagaaaatgtttattgaaattccttaatattcagaaaaattagcaatt
tttgtctattttaaacttattcatgaaaggggaagccttggcatagtact
taaagttgtaggagtgtatttgtgtatttatgtgtgtacagtttaaaaac
taagggagtggatggctaaagtttggaatataattgtaagaacatgaact
aacaagtaaaagaaaaataattacttaagatagtattgactgctttagtt
tttctgctggcttgacggaaaccttccatctaaattaggcagtaaaatca
aacttcataccagttatacaaatggaggagtcatttttttaagaaattct
tttttttttctctgtatgcttaccttatttttttttaattaggtattttc
ctcgtttacattttcaatgctatcccaaaagtccgccatacccacccccc
aatcccctacccacccactccccctttttggccctggcgttcccctgtac
tggggcatatacagtttgcaagtccaatgggcctctctttgcagtgatgg
ctgactaggccatcttttgatacatatgcagctagagtcaagagctccgg
ggtactggttagttcataatgttgttccacctatagggttgcagttccct
ttagctccttgggtattttctctagctcctccattggggactgtgtgacc
catcccatagctgactgtgatcatccacttctgtgtttgctaggccccgg
catagtctcaacaagagacagctatatctgggtcctttcagcaaaatctt
gctagtgtatacatggtgtcagcgtttggaagctgatttatgggatgatc
cctgcatatggcaatcact

gaattcactctgtagaccaggtaaaaatacacaaaatgagattccccaca
cacagaggagaggaaagtgcacaacagaacttacagtacattgtagacat
gcactcgagcatacacacacttccacacgcacagacacacacatacagag
acacacacacacagacacacacacatagacacacacacacacacacacac
acacatttacagtaggcatggaacacattcccaggaggcagagggtaaag
gacatgagagaaagagcagggagttggttccacctaggtgtattggagga
aaagagtgggggtggggtggaagaagcaacaaaccgagatggagatttga
tgaaggaaattattcctaaagtgtggacagatcaaaatcccccagggccc
taggaagactgatcaagtgcacagtgtttccatcccacacactgaagctt
catgagagggtcccttcactgttgacctgcaaccaggtcagacactgacg
atgtcaccagacaacaccgtgtgtatgaacagatgactaaaggcatagct
ctactgctgaagggagcttttttggtatccacactgaaactcagattgcc
ttataggattagaaatggggcaggggagcttgcgtcgtggctggatgctg
gagcctaagcttagcttgtgagagacccaaggttgactgtccagtgcctc
ctcccccttaccttccattaaggcattaagtcccaaagacaactcgatct
gtttacagaattcttacattcaagatttaatctccactcaaaccctttta
ttcacagggaaagcaacaaaaaacactctcagataattgtgggctcagaa
aggaccccattttccacagtgagaaagatagaaacccgtctttctagaca
gggagcagaaatgtaaggagaaaacagagaagtgagcttagaaagactgg
gcagttaacactgccactgatgaaaacccacacacctcaggttaaatggt
tgcaggaaaaacatttgcctacaagcatcaggaaacaataactaaagcgc
cagggccgaccaggttcaacgtccaaggggaaggagagtaagaaatacat
tgggccggacaggctcggccttccttcccttcggaagccaacacagtgga
gcttgtgtaatcacgagaagggcacacacccgaataggtctttaaggatt
cggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_54705838_54706365
seq2: B6Ng01-336B04.b_538_1059

seq1  TAAGAAACAGATATTCTTTTTTTTTT-TCTGTAT-AAAACC--AGTTTTT  46
      ||||||      |||||||||||||| |||||||    |||  | |||||
seq2  TAAGAA------ATTCTTTTTTTTTTCTCTGTATGCTTACCTTATTTTTT  44

seq1  TTTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTC  96
      ||| ||||  ||||||||||  |||||||| |||||||||||||||||||
seq2  TTTAATTAGGTATTTTCCTCGTTTACATTTTCAATGCTATCCCAAAAGTC  94

seq1  CCCCATACCCTCCCCCCCACTTCCCTACCCACCCATTCCCATTTTTTTTT  146
      | ||||||||  ||||||| | ||||||||||||| ||||     |||||
seq2  CGCCATACCC-ACCCCCCAATCCCCTACCCACCCACTCCC---CCTTTTT  140

seq1  GGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATG  196
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  GGCCCTGGCGTTCCCCTGTACTGGGGCATATACAGTTTGCAAGTCCAATG  190

seq1  GGCCTCTCTTTCCAGTGATGGCTGACTAGGCCATCTTTTGATACATATGC  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCTTTGCAGTGATGGCTGACTAGGCCATCTTTTGATACATATGC  240

seq1  AGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCATAATGTTGTTCCA  296
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCA  290

seq1  TCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCT  346
       |||||||||||||| |||||||||||||||||||| |||||||||||| 
seq2  CCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTATTTTCTCTAGCTCC  340

seq1  TCCATTGGGAGCCCTGGGATCCATCCACTAGCTGACTGTGAGCATTCACT  396
      |||||||||  |  || || ||||||  ||||||||||||| ||| ||||
seq2  TCCATTGGGGACTGTGTGACCCATCCCATAGCTGACTGTGATCATCCACT  390

seq1  TCTGTGTTTGCTAGGCCCCGGCATAGTCTC-ACAAGAGACAGCTATATCT  445
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTGTGTTTGCTAGGCCCCGGCATAGTCTCAACAAGAGACAGCTATATCT  440

seq1  GGGTCCTTTCAGCAAATTCTTGCTAGTGTATGCAATGATGTCAGCGTTTG  495
      |||||||||||||||| |||||||||||||| | ||| ||||||||||||
seq2  GGGTCCTTTCAGCAAAATCTTGCTAGTGTATAC-ATGGTGTCAGCGTTTG  489

seq1  GAAGTTGA-TTATGGGATGGATCCCTGGATATGG  528
      |||| ||| ||||||||| |||||||| ||||||
seq2  GAAGCTGATTTATGGGAT-GATCCCTGCATATGG  522


seq1: chr4_59386090_59387272
seq2: B6Ng01-336B04.g_67_1272

seq1  GAATTCACTCTGTAGACCAGGTAAAAATACACAAAATGAGATTCCCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGTAAAAATACACAAAATGAGATTCCCCACA  50

seq1  CACAGAGGAGAGGAAAGTGCACAACAGAACTTACAGTACATTGTAGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGAGAGGAAAGTGCACAACAGAACTTACAGTACATTGTAGACAT  100

seq1  GCACTCGAGCATACACACACTTCCACACGCACAGACACACACATACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCGAGCATACACACACTTCCACACGCACAGACACACACATACAGAG  150

seq1  ACACACACACACAGACACACACACATAGACACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAGACACACACACATAGACACACACACACACACACACAC  200

seq1  ACACATTTACAGTAGGCATGGAACACATTCCCAGGAGGCAGAGGGTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTACAGTAGGCATGGAACACATTCCCAGGAGGCAGAGGGTAAAG  250

seq1  GACATGAGAGAAAGAGCAGGGAGTTGGTTCCACCTAGGTGTATTGGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGAGAAAGAGCAGGGAGTTGGTTCCACCTAGGTGTATTGGAGGA  300

seq1  AAAGAGTGGGGGTGGGGTGGAAGAAGCAACAAACCGAGATGGAGATTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGGGGGTGGGGTGGAAGAAGCAACAAACCGAGATGGAGATTTGA  350

seq1  TGAAGGAAATTATTCCTAAAGTGTGGACAGATCAAAATCCCCCAGGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAATTATTCCTAAAGTGTGGACAGATCAAAATCCCCCAGGGCCC  400

seq1  TAGGAAGACTGATCAAGTGCACAGTGTTTCCATCCCACACACTGAAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGACTGATCAAGTGCACAGTGTTTCCATCCCACACACTGAAGCTT  450

seq1  CATGAGAGGGTCCCTTCACTGTTGACCTGCAACCAGGTCAGACACTGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAGGGTCCCTTCACTGTTGACCTGCAACCAGGTCAGACACTGACG  500

seq1  ATGTCACCAGACAACACCGTGTGTATGAACAGATGACTAAAGGCATAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACCAGACAACACCGTGTGTATGAACAGATGACTAAAGGCATAGCT  550

seq1  CTACTGCTGAAGGGAGCTTTTTTGGTATCCACACTGAAACTCAGATTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTGAAGGGAGCTTTTTTGGTATCCACACTGAAACTCAGATTGCC  600

seq1  TTATAGGATTAGAAATGGGGCAGGGGAGCTTGCGTCGTGGCTGGATGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGATTAGAAATGGGGCAGGGGAGCTTGCGTCGTGGCTGGATGCTG  650

seq1  GAGCCTAAGCTTAGCTTGTGAGAGACCCAAGGTTGACTGTCCAGTGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTAAGCTTAGCTTGTGAGAGACCCAAGGTTGACTGTCCAGTGCCTC  700

seq1  CTCCCCCTTACCTTCCATTAAGGCATTAAGTCCCAAAGACAACTCGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTTACCTTCCATTAAGGCATTAAGTCCCAAAGACAACTCGATCT  750

seq1  GTTTACAGAATTCTTACATTCAAGATTTAATCTCCACTCAAACC--TTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  GTTTACAGAATTCTTACATTCAAGATTTAATCTCCACTCAAACCCTTTTA  800

seq1  TTCACAGGGAAAGCAACAAAAAACACTCTCAGATAATTGTGGGCTCAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGGAAAGCAACAAAAAACACTCTCAGATAATTGTGGGCTCAGAA  850

seq1  AGGACCCCA-TTTCCACAGTGAGAAAAGATAGAAA-CCGTC-TTCTAGAC  895
      ||||||||| ||||||||||||| ||||||||||| ||||| ||||||||
seq2  AGGACCCCATTTTCCACAGTGAG-AAAGATAGAAACCCGTCTTTCTAGAC  899

seq1  AGGGAGCAGAAATGTAAGGAG-AAACAGAGAAGTGAGCTTAGAAAGACT-  943
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  AGGGAGCAGAAATGTAAGGAGAAAACAGAGAAGTGAGCTTAGAAAGACTG  949

seq1  GGCAGTTAACACTG-CACTGATGAAAACCCACACACCTCAGGTTAAATGG  992
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCAGTTAACACTGCCACTGATGAAAACCCACACACCTCAGGTTAAATGG  999

seq1  TTGCAG--AAAACATT--GCTACAAGCATCAGGAAACAA-AACTAAAGCG  1037
      ||||||  ||||||||   |||||||||||||||||||| ||||||||||
seq2  TTGCAGGAAAAACATTTGCCTACAAGCATCAGGAAACAATAACTAAAGCG  1049

seq1  CCA-GGCCGACCAGG-TCAACAGCCCAAGGGAAGGAGAGTAAGAAATACA  1085
      ||| ||||||||||| |||||  || | ||||||||||||||||||||||
seq2  CCAGGGCCGACCAGGTTCAACGTCCAAGGGGAAGGAGAGTAAGAAATACA  1099

seq1  T--GGGCGGACA-GCTCGGCCTTCCTTCC--TCAGAAGCCAACACAGT-G  1129
      |  || |||||| ||||||||||||||||  || |||||||||||||| |
seq2  TTGGGCCGGACAGGCTCGGCCTTCCTTCCCTTCGGAAGCCAACACAGTGG  1149

seq1  AGCT--GGTAATCA-GAGA--GGCACACACCCAAATAGGTTCTTTTAAAG  1174
      ||||   ||||||| ||||  ||||||||||| |||||||   ||||| |
seq2  AGCTTGTGTAATCACGAGAAGGGCACACACCCGAATAGGT--CTTTAAGG  1197

seq1  ATTCGGCCA  1183
      |||||||||
seq2  ATTCGGCCA  1206


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