BAC Information

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BAC

Clone NameB6Ng01-336G09
Chromosome4 (Build37)
Map Location 146,816,581 - 146,979,110
singlet/doubletdoublet
Overlap geneLOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Downstream gene2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336G09.bB6Ng01-336G09.g
ACCGA121333GA121334
length1,1101,168
definitionB6Ng01-336G09.b B6Ng01-336G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,816,581 - 146,817,190)(146,977,942 - 146,979,110)
sequence
gaattctcaacagaggtacaacagtgcacccatggggaagacccagctct
gctgtgctcatgccattgggattacctcacttgcaagccccatatgcagg
gacagctctactgtgctgtgagatgcagggcctgctgtctcagctgctag
gaaggtgaggatcacaatcagctctgctgctctcatgactcccttgaagc
caactcatctgcccccagctagtatcaagggacagtctcctgccaccttc
tgatccaccttccctttatctgcccagttatcagttctcctttattttac
aaatttaggtggggagctggtttacaagaaatcacctgagtgcagactca
ttccttgttcacaactcacaggagaatggaattaacatcaaatataatta
gctctggggctattcataacatttcctcctttctgtccaattaaaagact
attttatctcagatataattgaacataactattattattttgtaatttat
aaagtactagagacctaacacccagtccatcatctttgttaattaaacag
aacctctgtcatggatctttacttaacagacttataattctacatctgga
tatatcttggctttatattgaatgccatcttaaaaccatcctctcagaac
tgttcctctcaaagaaaaaaacctgggttggctaggagactacgcagttt
ttcaaccccatcagaaatccaagaatgactgatattaactgaaaatataa
agaaagcctaacacagcttccaaaacttagccaatttacagagatcacgg
atcacttggatagtcccttacttcaacatgttggagcattggtattcagc
ttattggccagggtcatctgacagacttagagaaacagaaatatttttaa
tattttttattagatattttccccatttacatttccaatgctatcccaaa
agtcccccataccctccccccgagaaacagaaatattaaggactagctta
ctaagggacccacttagcaactcagtagcttactagaaagctcacttgag
gaccgatccggattaaggggcggaggcgggtctggcccatagcgtttcga
ccccgcaccc
gaattccaatgcccttccaaagacttgggcatatttgtttgtctatatga
gttgaagagcttaaattcactcctgaagactggggatgtggctcagtggt
agagcacctgtctacagtgcataaggctgtgggttgcaagctctacccca
agccccacctttagtaataattaaaacaaaaacaaaataaaaacatcatc
caaaggagtaaagcagtgcttggttcagagtcttgtatggaatgcctgct
gtttctgtgtaaacagtgaaatcatatgtagcatgtttaaaaatatgttt
tcatgacgaagcaagatggtttggtgggtaaaggcacctactacccagct
ggatccctgatcacaggaggaaggaaaaaatagcctccagtaagctgtgt
gcccccccccaaatagatttttaaaatttcagttttgttttgattttttt
tttttaagacaaggtcttactacttagccctggctgtcttagaactctat
ggaccagactggcctcaaactcagaaattcacctgcctctgccacttgca
cactggcattaaagacaatgagccactataccaacaataaatgtaatttt
taaaaatgttaatgtatggccttaaatttaatattctgtgggaaatatgt
gtctacttacataagttgttattaattccctgacatgccagattattttt
gtgttgagcaagtcttattctggagactcattctgaggttgtttttgcaa
tggtactgactctgctgtggtaacaaaattggaaatggcttgttgggtgg
cagtagctcactctccgtgaactgacagtgtcccaatttgtcctgggctc
tttatgaccacctgtccttggcttctggtctcaccatagtatccctggtg
gggtaactagttcagagcatgtcagctgcatgctgtcgggactggtgatc
ttgtccatttctcctccctagtgccctggctaatccagtgctggggacac
accagtactccataacatgtatgtggaggacagatggagtttggctagga
ccacagctttacgaatatgtgcctttgaccaggctcttctggctgcagct
ctccagacatgaacaattccaagtgagaccgttctgcttgtgttccccat
cctcatgggggtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146816581_146817190
seq2: B6Ng01-336G09.b_557_1157

seq1  GAGACCTAACACCCAGTCCATCATCTTTGTTAATTAAACAGAACCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTAACACCCAGTCCATCATCTTTGTTAATTAAACAGAACCTCTGT  50

seq1  CATGTATCTTTACTTAAAAGACTTATAATTCTACATCTGCATATATCTTG  100
      |||| |||||||||||| ||||||||||||||||||||| ||||||||||
seq2  CATGGATCTTTACTTAACAGACTTATAATTCTACATCTGGATATATCTTG  100

seq1  GCTTTATATTGAATGCCATCTTAAAACCATCCTCTCAGAACTGTTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATATTGAATGCCATCTTAAAACCATCCTCTCAGAACTGTTCCTCT  150

seq1  CAAAGAAAAAAACCTGGGTTGGCTAGGAGACTACGCAGTTTTTCAACCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAAAAACCTGGGTTGGCTAGGAGACTACGCAGTTTTTCAACCCC  200

seq1  ATCAGAAATCCAAGAATGACTGATATTAACTGAAAATATAAAGAAAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAATCCAAGAATGACTGATATTAACTGAAAATATAAAGAAAGCCT  250

seq1  AACACAGCTTCCAAAACTTAGCCAATTTACAGAGATCACGGATCACTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCTTCCAAAACTTAGCCAATTTACAGAGATCACGGATCACTTGG  300

seq1  ACAGTCCCTTACTTCAACATGTTGGAGCACTGGTATTCAGCTTATTGCCC  350
      | ||||||||||||||||||||||||||| |||||||||||||||||  |
seq2  ATAGTCCCTTACTTCAACATGTTGGAGCATTGGTATTCAGCTTATTG-GC  349

seq1  CGGGGTCATCTGACAGACTTAGAGAAACAGAAATATTTTTTAATATTTTT  400
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGGGTCATCTGACAGACTTAGAGAAACAGAAATA-TTTTTAATATTTTT  398

seq1  TATTAGATATTTTCCCCATTTTCATTTCCAATGCTATCTCAAAAGTCCCC  450
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  TATTAGATATTTTCCCCATTTACATTTCCAATGCTATCCCAAAAGTCCCC  448

seq1  CATACCCTCCCCCCGAGAAACAGAAATATTAAGGAGTAGCTTACTAAGGG  500
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  CATACCCTCCCCCCGAGAAACAGAAATATTAAGGACTAGCTTACTAA-GG  497

seq1  GACCCACTTAGCCAACTCAGGTAGCTTACTAGAAAGCTCACTTGAGGAGT  550
      ||||||||||| ||||||| ||||||||||||||||||||||||||||  
seq2  GACCCACTTAG-CAACTCA-GTAGCTTACTAGAAAGCTCACTTGAGGA-C  544

seq1  GGATCTGGATTAAGGGGCCGGAGGCGGGTCCTGGGCACTAACGGTTTCGA  600
       |||| ||||||||||| ||||||||||| |||| |  || | |||||||
seq2  CGATCCGGATTAAGGGG-CGGAGGCGGGT-CTGGCCCATAGC-GTTTCGA  591

seq1  CCCCGCACCC  610
      ||||||||||
seq2  CCCCGCACCC  601

seq1: chr4_146977942_146979110
seq2: B6Ng01-336G09.g_66_1233 (reverse)

seq1  ACACACA-CCCCATGAGGGATGGGAACACAAAGCAGACTGTTCTCAACTT  49
      ||||||| ||||||||||   |||||||| |||||||  | |||| ||||
seq2  ACACACACCCCCATGAGGATGGGGAACAC-AAGCAGAACGGTCTC-ACTT  48

seq1  TGAAATG-TCATGTCTTGGAGGGCTGCAGCCAG-AGAGCCTGGTTCAAAG  97
       ||| || ||||||| ||||| ||||||||||| ||||||||| ||||||
seq2  GGAATTGTTCATGTC-TGGAGAGCTGCAGCCAGAAGAGCCTGG-TCAAAG  96

seq1  GCAACATAATTCGTAAAGCTTGTGGTCTTAGCCAAACT-CATCTGTCCTT  146
      || |||| ||||||||||| ||||||| |||||||||| ||||||||| |
seq2  GC-ACAT-ATTCGTAAAGC-TGTGGTCCTAGCCAAACTCCATCTGTCC-T  142

seq1  CCACATACATG-TATGGAGTACTGGTGTGTCCCAAGCACTGGACTAGCCA  195
      ||||||||||| ||||||||||||||||||||| ||||||||| ||||||
seq2  CCACATACATGTTATGGAGTACTGGTGTGTCCCCAGCACTGGATTAGCCA  192

seq1  GGGCACTAGGGA-GAGAAATGGACAAGATCACCAGTCCCGACAGCATGCA  244
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGCACTAGGGAGGAGAAATGGACAAGATCACCAGTCCCGACAGCATGCA  242

seq1  GCTGACATGCTCTGAACTAGTTACCCCACCAGGGATACTATGGTGAGACC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACATGCTCTGAACTAGTTACCCCACCAGGGATACTATGGTGAGACC  292

seq1  AGAAGCCAAGGACAGGTGGTCATAAAGAGCCCAGGACAAATTGGGACACT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCAAGGACAGGTGGTCATAAAGAGCCCAGGACAAATTGGGACACT  342

seq1  GTCAGTTCACGGAGAGTGAGCTACTGCCACCCAACAAGCCATTTCCAATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTCACGGAGAGTGAGCTACTGCCACCCAACAAGCCATTTCCAATT  392

seq1  TTGTTACCACAGCAGAGTCAGTACCATTGCAAAAACAACCTCAGAATGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACCACAGCAGAGTCAGTACCATTGCAAAAACAACCTCAGAATGAG  442

seq1  TCTCCAGAATAAGACTTGCTCAACACAAAAATAATCTGGCATGTCAGGGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAATAAGACTTGCTCAACACAAAAATAATCTGGCATGTCAGGGA  492

seq1  ATTAATAACAACTTATGTAAGTAGACACATATTTCCCACAGAATATTAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAACAACTTATGTAAGTAGACACATATTTCCCACAGAATATTAAA  542

seq1  TTTAAGGCCATACATTAACATTTTTAAAAATTACATTTATTGTTCGTATA  594
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTAAGGCCATACATTAACATTTTTAAAAATTACATTTATTGTTGGTATA  592

seq1  GTGGCTCATTGTCTTTAATGCCAGTGTGCAAGTGGCAGAGGCAGGTGAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCATTGTCTTTAATGCCAGTGTGCAAGTGGCAGAGGCAGGTGAAT  642

seq1  TTCTGAGTTTGAGGCCAGCCTGGTCCATAGAGTTCTAAGACAGCCAGGGC  694
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTGAGTTTGAGGCCAGTCTGGTCCATAGAGTTCTAAGACAGCCAGGGC  692

seq1  TAAGTAGTAAGACCTTGTCTT--AAAAAAAAAATCAAAACAAAACTGAAA  742
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  TAAGTAGTAAGACCTTGTCTTAAAAAAAAAAAATCAAAACAAAACTGAAA  742

seq1  TTTTAAAAATCTATTTGGGGGGGGGGCACACAGCTTACTGGAGGCTATTT  792
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATCTATTT-GGGGGGGGGCACACAGCTTACTGGAGGCTATTT  791

seq1  TTTCCTTCCTCCTGTGATCAGGGATCCAGCTGGGTAGTAGGTGCCTTTAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCTCCTGTGATCAGGGATCCAGCTGGGTAGTAGGTGCCTTTAC  841

seq1  CCACCAAACCATCTTGCTTCGTCATGAAAACATATTTTTAAACATGCTAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAACCATCTTGCTTCGTCATGAAAACATATTTTTAAACATGCTAC  891

seq1  ATATGATTTCACTGTTTACACAGAAACAGCAGGCATTCCATACAAGACTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTTCACTGTTTACACAGAAACAGCAGGCATTCCATACAAGACTC  941

seq1  TGAACCAAGCACTGCTTTACTCTTTTGGATGATGTTTTTATTTTGTTTTT  992
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGAACCAAGCACTGCTTTACTCCTTTGGATGATGTTTTTATTTTGTTTTT  991

seq1  GTTTTAATTATTACTAAAGGTGGGGCTTGGGGTGGAGCTTGCAACCCACA  1042
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTTAATTATTACTAAAGGTGGGGCTTGGGGTAGAGCTTGCAACCCACA  1041

seq1  GCCTTATGCACTGTAGACAGGTGCTCTACCACTGAGCCACATCCCCAGTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATGCACTGTAGACAGGTGCTCTACCACTGAGCCACATCCCCAGTC  1091

seq1  TTCAGGAGTGAATTTAAGCTCTTCAACTCATATAGACAAACAAATATGCC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGTGAATTTAAGCTCTTCAACTCATATAGACAAACAAATATGCC  1141

seq1  CAAGTCTTTGGAAGGGCATTGGAATTC  1169
      |||||||||||||||||||||||||||
seq2  CAAGTCTTTGGAAGGGCATTGGAATTC  1168