BAC Information

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BAC

Clone NameB6Ng01-336G22
Chromosome4 (Build37)
Map Location 12,699,002 - 12,859,244
singlet/doubletdoublet
Overlap geneOTTMUSG00000004461
Upstream geneCdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneLOC100039988, Runx1t1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336G22.bB6Ng01-336G22.g
ACCGA121355GA121356
length1,1991,021
definitionB6Ng01-336G22.b B6Ng01-336G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,699,002 - 12,700,217)(12,858,711 - 12,859,244)
sequence
gaattccattatttagaaattatattatagtgatcatttctattacttgt
aggagtaggaatcattttcatgaagttcttttttgatcaaaaatggttgt
ataactgagtaagtttagcctcactcttacctgaataaagaaattaaata
tgtattacatcatgagtttatgtgagttcatataaagtatgaattatatg
attccatataatgagtaatggtatgctgttaaatttgcattcttttcttt
gctcccatgaataatacatttaaggcttaacaagccacattaattactat
atgaaaatgctaagctacttaaaatttctcttaaagtagatatagctata
gtcagagttatatttctttttgaaaaatgatacccttcattacatggttc
acaggtaagtagcccagctcttgctaagaaaaaaacaaaacaacatcaaa
actaaacccatataatgcatttagtcagttattttcaatagtagtttgga
tctatctataacactctgtatgtaataactgttttgaaagccacttctta
gaaactagacaaaatgaagaaatgaacaaatatatttacattttactaag
catttgcatgtaaacagggtaaagagctgtttatgcgaacgttgggtctc
ataggaataatgagattaataagcctgggattgagtcatctgcactgaca
atcaataaagatttctatatatttctcttcaagtaattggctttcaattc
atttttgttggttttgctccccccccccccccatggccatgaaggatgtt
agagaatttcatcagaaagcatgacatcctagaacttttggaaatcaggg
tctggagatggggcttgtgtcaggcaagttctttctatcccagcattaga
ccgagtcaagacatctaccacccatttcaaagccctctgtggtaaactgt
aacttcatcctggggaaagatacagttagaaccctggattccagtttagc
tcagtcagtgagatcattgtcagtgagagactctgtcataaaaataagtg
gggatgtgattcagagacacttgatgtttgcctcttatctctacttggtg
tgacccaataaacccgactgaaacgaacgacggaccgaacgaccccaccc
cacttgttaaactgacaaaaccttatgccccctccacagtgcccgttgg

gaattctttgtaaacataggaagctagactgaatttattcttataatgtg
ctcatcctgattttatttcaaaattgtgttagccccaagaaataagtttg
gaagtgttgtttctgtccatgtatttcaaaaccacttatttcatatttaa
tggatttttatagcaattatcttcacttgagtgcagagtagaccctacct
ataaaatcagttagtcttgcctattttgttttctatgtatgtgtatataa
tggtataaaagcttaggactagggtctgggttctatccctagaattccaa
aacaaagacaaacaaaacaaagtacaaaatgtggttagtaaagttgacat
gaactttacaatgaatggaatacttgttgaattaaaacttcttggtatgg
tcagggttatcttagagactcccaaaacaatgtggacaactgctgttgtc
ttgattaaaccccagatttaaagtaagcctttagtgttaaagattccaca
ctgtagacacagaacttggaagaatcttgatggcacttacctggaaggct
aaatcctgggaactatgtctaataatacccagagatgctatgcaagatac
caaggaaagaaaataatcaatagacataattagatataaagtctatggat
cacatcaataaccagtccagcaaggctttcctatttgtgtaatagtgcct
tgtttatcttgagggttcatgtctagtactgtagattcagccaactatcc
atggctggaaaggtcctggtatagaggaactttaattcaacaacatggct
gttctggcaaggaatcatacccaaagatcttctaggtctataaaatctag
acagaatgcagacacactctggaatatagcatattctaactggatacatc
tttaatccctggcattgaaggtaaaggttaaatatagaaggaagcagctg
tgcttgaaatgattagttgggggtggggactagacaaagtgatgaatcta
aggagatctgacagatgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12699002_12700217
seq2: B6Ng01-336G22.b_44_1242

seq1  GAATTCCATTATTTAGAAATTATATTATAGTGATCATTTCTATTACTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTATTTAGAAATTATATTATAGTGATCATTTCTATTACTTGT  50

seq1  AGGAGTAGGAATCATTTTCATGAAGTTCTTTTTTGATCAAAAATGGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGGAATCATTTTCATGAAGTTCTTTTTTGATCAAAAATGGTTGT  100

seq1  ATAACTGAGTAAGTTTAGCCTCACTCTTACCTGAATAAAGAAATTAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGAGTAAGTTTAGCCTCACTCTTACCTGAATAAAGAAATTAAATA  150

seq1  TGTATTACATCATGAGTTTATGTGAGTTCATATAAAGTATGAATTATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTACATCATGAGTTTATGTGAGTTCATATAAAGTATGAATTATATG  200

seq1  ATTCCATATAATGAGTAATGGTATGCTGTTAAATTTGCATTCTTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATATAATGAGTAATGGTATGCTGTTAAATTTGCATTCTTTTCTTT  250

seq1  GCTCCCATGAATAATACATTTAAGGCTTAACAAGCCACATTAATTACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATGAATAATACATTTAAGGCTTAACAAGCCACATTAATTACTAT  300

seq1  ATGAAAATGCTAAGCTACTTAAAATTTCTCTTAAAGTAGATATAGCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATGCTAAGCTACTTAAAATTTCTCTTAAAGTAGATATAGCTATA  350

seq1  GTCAGAGTTATATTTCTTTTTGAAAAATGATACCCTTCATTACATGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTTATATTTCTTTTTGAAAAATGATACCCTTCATTACATGGTTC  400

seq1  ACAGGTAAGTAGCCCAGCTCTTGCTAAGAAAAAAACAAAACAACATCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAAGTAGCCCAGCTCTTGCTAAGAAAAAAACAAAACAACATCAAA  450

seq1  ACTAAACCCATATAATGCATTTAGTCAGTTATTTTCAATAGTAGTTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACCCATATAATGCATTTAGTCAGTTATTTTCAATAGTAGTTTGGA  500

seq1  TCTATCTATAACACTCTGTATGTAATAACTGTTTTGAAAGCCACTTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATAACACTCTGTATGTAATAACTGTTTTGAAAGCCACTTCTTA  550

seq1  GAAACTAGACAAAATGAAGAAATGAACAAATATATTTACATTTTACTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGACAAAATGAAGAAATGAACAAATATATTTACATTTTACTAAG  600

seq1  CATTTGCATGTAAACAGGGTAAAGAGCTGTTTATGCGAACGTTGGGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCATGTAAACAGGGTAAAGAGCTGTTTATGCGAACGTTGGGTCTC  650

seq1  ATAGGAATAATGAGATTAATAAGCCTGGGATTGAGTCATCTGCACTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAATAATGAGATTAATAAGCCTGGGATTGAGTCATCTGCACTGACA  700

seq1  ATCAATAAAGATTTCTATATATTTCTCTTCAAGTAATTGGCTTTCAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAAGATTTCTATATATTTCTCTTCAAGTAATTGGCTTTCAATTC  750

seq1  ATTTTTGTTGGTTTTGCT-CCCCCCCCCCCCCATGGCCATGAAGGATGTT  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTTTGTTGGTTTTGCTCCCCCCCCCCCCCCATGGCCATGAAGGATGTT  800

seq1  AGAGAATTTCATCAGAAAGCATGACATCCTAGAACTTTTGGAAATCAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAGAATTTCATCAGAAAGCATGACATCCTAGAACTTTTGGAAATCA-GG  849

seq1  GTCTGGAGATGGGGCTTGTGTCAGGCAAGTTCTTTCTATCCCAGCATTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGATGGGGCTTGTGTCAGGCAAGTTCTTTCTATCCCAGCATTAG  899

seq1  ACCGAGTCAAGACATCTACCACCCATTTCAAAAGCCCTCTGTGGTAAACT  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCGAGTCAAGACATCTACCACCCATTTC-AAAGCCCTCTGTGGTAAACT  948

seq1  GTAACTTTCATCCTGGGGAAAGATACAGTTAGAACCCTGGGATTCCAGTT  999
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  GTAAC-TTCATCCTGGGGAAAGATACAGTTAGAACCCT-GGATTCCAGTT  996

seq1  TAGCTCAGTCAGTGAGATCAATGTTCAGTGAGAGACTCTGTCATAAAAAA  1049
      |||||||||||||||||||| || |||||||||||||||||||| |||||
seq2  TAGCTCAGTCAGTGAGATCATTG-TCAGTGAGAGACTCTGTCAT-AAAAA  1044

seq1  TAAGGTGGGGAAGGGTGATTCAGGAGGACACTTGATGTTTGCCTCTCATC  1099
      ||| |||||||   |||||||||   |||||||||||||||||||| |||
seq2  TAA-GTGGGGA--TGTGATTCAG--AGACACTTGATGTTTGCCTCTTATC  1089

seq1  TCTACTTGTGTG-GACACAAATAAAAACACAGACAGAGACAGACAGACAG  1148
      |||||||| ||| ||| | ||||||    | ||| || || ||  ||| |
seq2  TCTACTTG-GTGTGAC-CCAATAAA---CCCGACTGAAAC-GAACGACGG  1133

seq1  ACAGACAGACACACACACACAATTTTGTAAACTGAACAAAAACCTTATGG  1198
      || ||  |||   | ||| | | ||  ||||||||   ||||||||||| 
seq2  ACCGAACGAC---CCCACCCCACTTGTTAAACTGA--CAAAACCTTATGC  1178

seq1  CCCTT---CAGTGCCCTTTGG  1216
      ||| |   |||||||| ||||
seq2  CCCCTCCACAGTGCCCGTTGG  1199


seq1: chr4_12858711_12859244
seq2: B6Ng01-336G22.g_63_596 (reverse)

seq1  GCCATCAAGATTCTTCCAAGTTCTGTGTCTACAGTGTGGAATCTTTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAAGATTCTTCCAAGTTCTGTGTCTACAGTGTGGAATCTTTAACA  50

seq1  CTAAAGGCTTACTTTAAATCTGGGGTTTAATCAAGACAACAGCAGTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGCTTACTTTAAATCTGGGGTTTAATCAAGACAACAGCAGTTGTC  100

seq1  CACATTGTTTTGGGAGTCTCTAAGATAACCCTGACCATACCAAGAAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTTTTGGGAGTCTCTAAGATAACCCTGACCATACCAAGAAGTTT  150

seq1  TAATTCAACAAGTATTCCATTCATTGTAAAGTTCATGTCAACTTTACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAACAAGTATTCCATTCATTGTAAAGTTCATGTCAACTTTACTAA  200

seq1  CCACATTTTGTACTTTGTTTTGTTTGTCTTTGTTTTGGAATTCTAGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTTGTACTTTGTTTTGTTTGTCTTTGTTTTGGAATTCTAGGGAT  250

seq1  AGAACCCAGACCCTAGTCCTAAGCTTTTATACCATTATATACACATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAGACCCTAGTCCTAAGCTTTTATACCATTATATACACATACAT  300

seq1  AGAAAACAAAATAGGCAAGACTAACTGATTTTATAGGTAGGGTCTACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAAAATAGGCAAGACTAACTGATTTTATAGGTAGGGTCTACTCT  350

seq1  GCACTCAAGTGAAGATAATTGCTATAAAAATCCATTAAATATGAAATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAAGTGAAGATAATTGCTATAAAAATCCATTAAATATGAAATAAG  400

seq1  TGGTTTTGAAATACATGGACAGAAACAACACTTCCAAACTTATTTCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGAAATACATGGACAGAAACAACACTTCCAAACTTATTTCTTGG  450

seq1  GGCTAACACAATTTTGAAATAAAATCAGGATGAGCACATTATAAGAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACACAATTTTGAAATAAAATCAGGATGAGCACATTATAAGAATAA  500

seq1  ATTCAGTCTAGCTTCCTATGTTTACAAAGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCTAGCTTCCTATGTTTACAAAGAATTC  534


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