BAC Information

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BAC

Clone NameB6Ng01-336K03
Chromosome4 (Build37)4 (Build37)
Map Location 52,543,364 - 52,544,54365,605,587 - 65,606,175
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883
Downstream gene4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336K03.bB6Ng01-336K03.g
ACCGA121499GA121500
length1,1741,060
definitionB6Ng01-336K03.b B6Ng01-336K03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,543,364 - 52,544,543)(65,605,587 - 65,606,175)
sequence
gaattctttaactgttctaccctatggtccggtgtgcttgagaaacaatc
aaaatgatctgaacacctgtagccttaattcacaaaaacctgcagtagca
agaaagttcaacctttagtttatttagtttatttatttagtttacttagt
ttttacaatttcatacagatctacaaagtgtcctatttgtatctactcct
gactccctccttccatctcctctcccttagcactactgccaaggcatctc
cctcccaataccacgatttttttttttaataactcatggaatacaattag
ggctgtccatatgtatgtgggtgttagagaagtgactgattcttcccacg
cagccatcaactgctgacagctcctcagttatgggcaggatcttaggagc
cctttccagctctatactggaattttaaactagattgctcttgtacatgt
aactatagctaccacaagttcatatgagcaacagccatgctgtccagagg
acagaatttcacagcactcttccccattctctagctcttatactttcttt
gatccccacatctcacctctacttaatgttccctgagccttgggtgatgg
attaacataagtggcccatctacagctaagtactcatccactaccaacta
caacaaaaagcttctaagatcaaagttagaacagcaaaaatctgtggata
gaaacgaaaatacatagaaggcagcttggtatggggtcatttagcagagc
aacatcagtagatgcagctcttctgcctataacttctcttgccatggttt
taatcatgtttatattacagctcaactatgaattctctcccatggagcaa
ggcccaaagccaatcagaaaggcagttggttaaccccataacagacctgc
cactattgcacatcttgcccacaggccagtgttctaacgtgcaatagtga
tagaccgttgacattttttctcccagctttcagtactgtgaaaactagcc
agtcagaatgattcagcatatttctaggtacagtctaaaagcccctagca
tgtcagtgcctttcaggagaatagtagagttgaagaggagcatgtatagg
aaatgaaagggattaccttctgtcattcatccaagtgctgtatgacagac
acattgttctcagcaatgggaggt
gaattctgtgggtgagatttatttctgaggctcccgcttaagtccctaaa
ttgttcatttcctgagttccctctctttgcttattatttatcgactctaa
ttctttctttagtctagaaatattttcccttccactttttgtttgtggtt
tcataaatttctttaaaggatttattcatttcatctttaaagacttctat
tatattcataaatgctatttcaaggtctttgtcttgtgcttcaactatat
tgcaaaacgcacggtctgctgtggaagggttgttggcctttactggctat
atattgtcctggctgtttctgattgcgagtttgatcatctacgcacatag
gtttggaatgtttgcaattcgaggtgctgatatccctcttgactttgctg
ggtgggcgggtgtgtcactcctcactttgcccattctgatcaatttatga
ctgtagtagctgattgtagccagacactttgctgatggagggaaggaaac
agagatgatccaggcaattgctgataacttatgaatttaagttctgataa
gtgggactaatttttaaacagcaactctgagatgtaaccttattttaatt
cacgaagaattctaattattacagaattaattcattctattgagagaaat
tgagagtccattaactaagtagagtttatgaaggatggtgatattaaagt
aaaagatactttagctgagaagacaaactcttgtctttggatataggagg
aaaaactgtgagtgaatattttagtgaggacaatacaaagatactctcca
ggatgtggtagcctgagaagatgggatgagatatcttggttcttgtgact
ggttactggatagattttgttgagctaattttcaaaacattgaaaatatt
taatctgaattcttgtgtagaaagatgtggaggacagactataatagttg
tgtatgagtgattctggaagcatgagaagtacttcctttttttctcttac
tgaatagcagatcaattactgaaactttaataacaggataaagggaacgc
acatctgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52543364_52544543
seq2: B6Ng01-336K03.b_43_1216

seq1  GAATTCTTTAACTGTTCATACCCTAGGGTAAGGTGTGCTTGAGAAACAAT  50
      ||||||||||||||||| ||||||| |||  |||||||||||||||||||
seq2  GAATTCTTTAACTGTTC-TACCCTATGGTCCGGTGTGCTTGAGAAACAAT  49

seq1  CAAAATGATCTGAACACCTTTAGCCTTAATTCAGAAAAACCTGCAGTAGC  100
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  CAAAATGATCTGAACACCTGTAGCCTTAATTCACAAAAACCTGCAGTAGC  99

seq1  AAGAAAGTTCAACCTTTAGTTTATTTAGTTTATTTATTTAGTTTACTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTTCAACCTTTAGTTTATTTAGTTTATTTATTTAGTTTACTTAG  149

seq1  TTTTTACAATTTCATACAGATCTACAAAGTGTCCTATTTGTATCTACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAATTTCATACAGATCTACAAAGTGTCCTATTTGTATCTACTCC  199

seq1  TGACTCCCTCCTTCCATCTCCTCTCCCTTAGCACTACTGCCAAGGCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCTCCTTCCATCTCCTCTCCCTTAGCACTACTGCCAAGGCATCT  249

seq1  CCCTCCCAATACCACGATTTTTTTTTTTAATAACTCATGGAATACAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCAATACCACGATTTTTTTTTTTAATAACTCATGGAATACAATTA  299

seq1  GGGCTGTCCATATGTATGTGGGTGTTAGAGAAGTGACTGATTCTTCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTCCATATGTATGTGGGTGTTAGAGAAGTGACTGATTCTTCCCAC  349

seq1  GCAGCCATCAACTGCTGACAGCTCCTCAGTTATGGGCAGGATCTTAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCATCAACTGCTGACAGCTCCTCAGTTATGGGCAGGATCTTAGGAG  399

seq1  CCCTTTCCAGCTCTATACTGGAATTTTAAACTAGATTGCTCTTGTACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCAGCTCTATACTGGAATTTTAAACTAGATTGCTCTTGTACATG  449

seq1  TAACTATAGCTACCACAAGTTCATATGAGCAACAGCCATGCTGTCCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATAGCTACCACAAGTTCATATGAGCAACAGCCATGCTGTCCAGAG  499

seq1  GACAGAATTTCACAGCACTCTTCCCCATTCTCTAGCTCTTATACTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATTTCACAGCACTCTTCCCCATTCTCTAGCTCTTATACTTTCTT  549

seq1  TGATCCCCACATCTCACCTCTACTTAATGTTCCCTGAGCCTTGGGTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCCACATCTCACCTCTACTTAATGTTCCCTGAGCCTTGGGTGATG  599

seq1  GATTAACATAAGTGGCCCATCTACAGCTAAGTACTCATCCACTACCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACATAAGTGGCCCATCTACAGCTAAGTACTCATCCACTACCAACT  649

seq1  ACAACAAAAAGCTTCTAAGATCAAAGTTAGAACAGCAAAAATCTGTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAAGCTTCTAAGATCAAAGTTAGAACAGCAAAAATCTGTGGAT  699

seq1  AGAAACGAAAATACATAGAAGGCAGCTTGGTATGGGGTCATTTAGCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACGAAAATACATAGAAGGCAGCTTGGTATGGGGTCATTTAGCAGAG  749

seq1  CAACATCAGTAGATGCAGCTCTTCTGCCTATAACTTCTCTTGCCATGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCAGTAGATGCAGCTCTTCTGCCTATAACTTCTCTTGCCATGGTT  799

seq1  TTAATCATGTTTATATTACAGCTCAACTATGAATTCTCTCCCATGGAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATGTTTATATTACAGCTCAACTATGAATTCTCTCCCATGGAGCA  849

seq1  AGGCCCAAAGCCAATCAGAAAGGCAGTTGGTTAACCCCATAACAGACCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAAAGCCAATCAGAAAGGCAGTTGGTTAACCCCATAACAGACCTG  899

seq1  CCACTATTGCACATCTTGCCCACAGGCCAGTGTTCTAACGTGCAAATAGT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCACTATTGCACATCTTGCCCACAGGCCAGTGTTCTAACGTGC-AATAGT  948

seq1  GATAGACCGTTGACATTTTTTCTCCCCAGCTTTCAGTACTGTGAAAACTA  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATAGACCGTTGACATTTTTTCT-CCCAGCTTTCAGTACTGTGAAAACTA  997

seq1  GCCAGTCAGAATGATTCAGCATATTTCTAGGTACAAGTCTAAAAGCCCCT  1050
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCCAGTCAGAATGATTCAGCATATTTCTAGGTAC-AGTCTAAAAGCCCCT  1046

seq1  AGCATGTCAGTGCCTTTCAGGAG-ATAGTAGAGTTTGAGAGGGAGCAATG  1099
      ||||||||||||||||||||||| |||||||||||  ||| ||||| |||
seq2  AGCATGTCAGTGCCTTTCAGGAGAATAGTAGAGTTGAAGA-GGAGC-ATG  1094

seq1  TATAGGAAATGAAGGGAATACCCTTCGTGTCTTTCATCC-AGTGCTGTAT  1148
      ||||||||||||| || ||  ||||| |||| ||||||| ||||||||||
seq2  TATAGGAAATGAAAGGGATTACCTTC-TGTCATTCATCCAAGTGCTGTAT  1143

seq1  GACAGAGACATTTGGTTCTCAGC-ATAGGAGGT  1180
      |||||| |||||  ||||||||| || ||||||
seq2  GACAGACACATT--GTTCTCAGCAATGGGAGGT  1174

seq1: chr4_65605587_65606175
seq2: B6Ng01-336K03.g_533_1121

seq1  AGACACTTTGCTGAGGGAGGGAAGGATACAGAGATGAACTAGGCAAAAGC  50
      |||||||||||||| ||||||||||| |||||||||| | ||||||  ||
seq2  AGACACTTTGCTGATGGAGGGAAGGAAACAGAGATGATCCAGGCAATTGC  50

seq1  TGTAAACTTATGAATTTAAGTTCTAATAGGTGGGACAAATTTTTAAACAG  100
      ||  |||||||||||||||||||| ||| ||||||| |||||||||||||
seq2  TGATAACTTATGAATTTAAGTTCTGATAAGTGGGACTAATTTTTAAACAG  100

seq1  CAACTCTGAGATGTAACCTTATTTTAATAAACAAAGAATTCTAATTATTA  150
      ||||||||||||||||||||||||||||  || |||||||||||||||||
seq2  CAACTCTGAGATGTAACCTTATTTTAATTCACGAAGAATTCTAATTATTA  150

seq1  CAGAATTAATTCATTCTATTGAGAGAAATTGAGAGTCCATTAACTAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTAATTCATTCTATTGAGAGAAATTGAGAGTCCATTAACTAAGTA  200

seq1  GAGTTTATGAAGGATGGTGATATTAAAGTAAAAGATACTTTAGCTGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATGAAGGATGGTGATATTAAAGTAAAAGATACTTTAGCTGAGAA  250

seq1  GACAAACTCTTGTCTTTGGATATAGGAGGAAAAACTGTGAGTGAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACTCTTGTCTTTGGATATAGGAGGAAAAACTGTGAGTGAATATTT  300

seq1  TAGTGAGGACAATACAAAGATACTCTCCAGGATGTGGTAGCCTGAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGGACAATACAAAGATACTCTCCAGGATGTGGTAGCCTGAGAAGA  350

seq1  TGGGATGAGATAATCTTGGTTCTTGTGACTGGTTACTGGATAGATTTTGT  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGAGAT-ATCTTGGTTCTTGTGACTGGTTACTGGATAGATTTTGT  399

seq1  TGAGCTAATTTTCAAAACATTGAAAATATTTAATCTGAATTCTTGTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAATTTTCAAAACATTGAAAATATTTAATCTGAATTCTTGTGTAG  449

seq1  AAAGATGTGGAGGACAGACTATAATAGTTGTGTATGAGTGATTCTGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTGGAGGACAGACTATAATAGTTGTGTATGAGTGATTCTGGAAG  499

seq1  CATGAGGAAGTACTTCC-TTTTTTCTCTTACTGAATAGCAGACACAATAC  549
      ||||| ||||||||||| ||||||||||||||||||||||||   | |||
seq2  CATGA-GAAGTACTTCCTTTTTTTCTCTTACTGAATAGCAGATCAATTAC  548

seq1  TG-AACTTTAATAACA-GATAAAGGGAACGCACATCTTGATG  589
      || ||||||||||||| ||||||||||||||||||| |||||
seq2  TGAAACTTTAATAACAGGATAAAGGGAACGCACATC-TGATG  589