BAC Information

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BAC

Clone NameB6Ng01-336K10
Chromosome4 (Build37)
Map Location 145,660,379 - 145,765,756
singlet/doubletdoublet
Overlap geneLOC100041433, LOC433790, LOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336K10.bB6Ng01-336K10.g
ACCGA121513GA121514
length1,0721,145
definitionB6Ng01-336K10.b B6Ng01-336K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,660,379 - 145,661,221)(145,764,602 - 145,765,756)
sequence
gaattctctgatgaactctcagactgcctttgtcagtaaagcatttgtca
cactcattacatttgtaaggtttctctcctgtatgaattctctgatgctt
tctcagagtgaatttgtcagtaaagcatttgtcacattcattacatttgt
aaggtttctctcctgtatgaattctctgatgctttctcagagtgcatttg
tcaggaaagcatttgtcgcattcactacatttgtaaggtttctttcctga
atgaattctacgatgaatactaagatgggatggttgggtaaagcatttgt
cacactcactgcatttgtaaggtttctctcctgtatgaattctctgatga
actctcagactgcctttgtcagtaaagcatttgtcacattcattacattt
gtaaggtttctctcctgtatgaattctctgatgctttctcagagtgcatt
tgtcagtaaagcatttgtcgcattcactacatttgtaaggtttctctcct
gtatgaattctctgatgctttctcagagtgcatttgtcagtaaagcattt
gtcgcattcactacatttgtaaggtttctctcctgaatgaattgtatgat
gaatactaagatgggaaggttgggtaaagcatttgtcactttcactatat
atgtaagatttctttcctggataaattctctgctgactttgaagattgtc
actctgagtaaagcatttgtcaaattcaccacaagtgtaagtgctcattt
cactattgttttgtctagaaaccaaaacctcatcaagatttttatttctg
ttgtgttctttcttctctatgtgggttccttgattgagactaatgataga
agacccctttaaacagtttacacagtctttatatgtgcaaacttctttag
tggtcccagttttatgtctttttaggtttgaggattggagagtggcatct
ctgtggttagtgttataagtgtactttcggaggattcatggatcacattt
ctaagctcattacatttagagacttctttcggttatgcccatgctcattg
aacaatgtgcttgtgtgtcttg
gaattccaggaacctgttgaatattgggcgggtccagaaggcggggctag
gcagaagtgaagggaagttcctaggtttcatcattctctttgtatcttgg
ttgccttgtggtcaggaagtcctggagggaaacttgtgcctagtattagt
ggaacatgaaaacttccttaagcagcagttgctgtgctggcctcctagga
cattcagcagctggtcctgtcaccttccaggtcagaggagctgttgtact
ggttaatgggcaggagcagggcaggtgtgtggagcatggttgcattttct
gcctccactatctcaattctgtggtggatatcttaccattatcaggaagt
ttgagatcctgtgaattgggttcatggtgatgttttaattaattttatgg
tggccagaatatatatacataatatattattattattcatttaaataacc
ccgtagatccttggccttctctggagtttgtgtaccgggatggttgtctt
ttcaaaagccttaatagagctcctcgaattcaaattcattcatgctttct
taactcgcctgttcctccatttgcattttcatttccttttctccagggaa
ctgaataggcacccagagagagctttgtagatatttgtcatatgggggac
cagtgcagatttgattgaattagaaaatattctttgtaaagtaccgtcat
gttgctgtacatattaatattaacctagcaaagttatagtctccgttagt
ttaacactgaggtatatgcagtctttgatgtaaatacagcattgagaaat
gtgtcttcataggcttagttattaatgtcacaccttaggtttgaataaaa
cgtgaagacaggattgcagcaaggtacagctgaggagaagatatatagta
ggttctgtcaaccctgagtgtctccagagaaaaactaattgtaccatgtg
ggcaagtttataaaatatacatcgtgaccaagagatggatttggtcacat
gctacaggcagtttaataggccattgtagtttctatgagctttatcattt
ccaagatataaactgcagcaatgcacgaagaatactggttctatgctgga
aggtggcagtatttttgcttcaagtctgggggagaaaggacattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145660379_145661221
seq2: B6Ng01-336K10.b_288_1115

seq1  TCCTGAATGAATTCTACGATGAAAACTAAGATGGGATGGTTGGGTAAAGC  50
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCTGAATGAATTCTACGATGAATACTAAGATGGGATGGTTGGGTAAAGC  50

seq1  ATTTGTCACACTCACTGCATTTGTAAGGTTTCTCTCCAGTATGAATTCTC  100
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTTGTCACACTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTC  100

seq1  TGATGAACTCTCAGATAGCCTTTGTCAGTAAAGCATTTGTCACACTCACT  150
      |||||||||||||||  ||||||||||||||||||||||||||| ||| |
seq2  TGATGAACTCTCAGACTGCCTTTGTCAGTAAAGCATTTGTCACATTCATT  150

seq1  GCATTTGTAAGGTTTCTCTCCAGTATGAATTCTCTGATGAACTCTCAGAT  200
       |||||||||||||||||||| |||||||||||||||||   ||||||| 
seq2  ACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGCTTTCTCAGAG  200

seq1  AGCCTTTGTCAGTAAAGCATTTGTCACACTCACTGCATTTGTAAGGTTTC  250
       || ||||||||||||||||||||| || ||||| |||||||||||||||
seq2  TGCATTTGTCAGTAAAGCATTTGTCGCATTCACTACATTTGTAAGGTTTC  250

seq1  TCTCCCGTATGAATTCTCTGATGCTTTCTCAGAGTGCATTTGTCAGTAAA  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTATGAATTCTCTGATGCTTTCTCAGAGTGCATTTGTCAGTAAA  300

seq1  GCATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGAATGAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGAATGAATTG  350

seq1  TATGATGAATACTAAGATGGGAAGGTTGGGTAAAGCATTTGTCACTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGAATACTAAGATGGGAAGGTTGGGTAAAGCATTTGTCACTTTCA  400

seq1  CTATATTTGTAAGATTTCTTTCCTGGCT---TTCTCTGCTGACTTTGAAG  447
      |||||| ||||||||||||||||||| |   |||||||||||||||||||
seq2  CTATATATGTAAGATTTCTTTCCTGGATAAATTCTCTGCTGACTTTGAAG  450

seq1  ACTGTCACTCTGAGTAAAGCATTTGTCAAATTCACCACAAGTGTAAGTGT  497
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTGTCACTCTGAGTAAAGCATTTGTCAAATTCACCACAAGTGTAAGTGC  500

seq1  TCATTTCACTATTGTTTTGTCTCACAATGGGTTTATGTTTAGAAACCAAA  547
      |||||||||||||||||||||                  |||||||||||
seq2  TCATTTCACTATTGTTTTGTC------------------TAGAAACCAAA  532

seq1  ACCTCATCAAGATTTTTATTTCTGTTGTGTTCTTTCTTCTCTATGTGGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCAAGATTTTTATTTCTGTTGTGTTCTTTCTTCTCTATGTGGGT  582

seq1  TCCTTGATTGAGACTAATGATAGAAGACCCCTTTAAACAGTTTACACAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATTGAGACTAATGATAGAAGACCCCTTTAAACAGTTTACACAGT  632

seq1  CTTTATATGTGCAAACTTCTTTAGTGGTCCCAGTTTTATGTCTTTTTAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATGTGCAAACTTCTTTAGTGGTCCCAGTTTTATGTCTTTTTAGG  682

seq1  TTTGAGAATTGGAATGTGGCATCTCTTTGGTTAGTGTTATAAGGTGTACT  747
      |||||| ||||||  ||||||||||| ||||||||||||||| |||||||
seq2  TTTGAGGATTGGAGAGTGGCATCTCTGTGGTTAGTGTTATAA-GTGTACT  731

seq1  TTCGGAGGATTCATGAATCACATTACTAAGCTCATTACATTTAGAAGACT  797
      ||||||||||||||| |||||||| ||||||||||||||||||| |||||
seq2  TTCGGAGGATTCATGGATCACATTTCTAAGCTCATTACATTTAG-AGACT  780

seq1  TCTTTCGGATATGCCCATGCTCATTG-ACAATGTGC-TGTATGTCTTG  843
      |||||||| ||||||||||||||||| ||||||||| ||| |||||||
seq2  TCTTTCGGTTATGCCCATGCTCATTGAACAATGTGCTTGTGTGTCTTG  828

seq1: chr4_145764602_145765756
seq2: B6Ng01-336K10.g_69_1213 (reverse)

seq1  GAATG--CTTTCTCCCCCAGACTGAAAAGCCAAAAATTAACTG-CACC-G  46
      |||||  ||||||||||||||||  ||   |||||||  |||| ||||  
seq2  GAATGTCCTTTCTCCCCCAGACTTGAA--GCAAAAAT--ACTGCCACCTT  46

seq1  CCAGCATAAGAACCAGGTATCTTCGTGCATTGCTGCAGGGTTATGTCTTG  96
      ||||||| ||||||||   |||||||||||||||||| | |||| |||||
seq2  CCAGCAT-AGAACCAGTATTCTTCGTGCATTGCTGCA-GTTTATATCTTG  94

seq1  GGAAAATGATAAAGCCTCACAGGAAACTACAATGGCCTATTAAACTGCCT  146
      |  ||||||||||| |||| | ||||||||||||||||||||||||||||
seq2  G--AAATGATAAAG-CTCATA-GAAACTACAATGGCCTATTAAACTGCCT  140

seq1  GTAGCATGTGACCAAATCCATCTCTTGGTCACGATGTATTATTTTATAAA  196
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  GTAGCATGTGACCAAATCCATCTCTTGGTCACGATGTA-TATTTTAT-AA  188

seq1  ACTTGCCCACATGGTACAATTAGTTTTTCTCTGGAAACACTCAGGGTTGA  246
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTTGCCCACATGGTACAATTAGTTTTTCTCTGGAGACACTCAGGGTTGA  238

seq1  CAGAACCTACTATATATCTTCTCCTCAACTGTACCTTGCTGCAATCCTGT  296
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGAACCTACTATATATCTTCTCCTCAGCTGTACCTTGCTGCAATCCTGT  288

seq1  C------TTTTATTCAAACCTAAGGTGTGACATTAATAACTAAGCCTATG  340
      |      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACGTTTTATTCAAACCTAAGGTGTGACATTAATAACTAAGCCTATG  338

seq1  AAGACACATTTCTCAATGCTGTATTTACATCAAAGACTGCATATACCTCA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACATTTCTCAATGCTGTATTTACATCAAAGACTGCATATACCTCA  388

seq1  GTGTTAAACTAACGGAGACTATAACTTTGCTAGGTTAATATTAATATGTA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAACTAACGGAGACTATAACTTTGCTAGGTTAATATTAATATGTA  438

seq1  CAGCAACATGACGGTACTTTAAAAAGAATATTTTCTAATTCAATCAAATC  490
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGCAACATGACGGTACTTTACAAAGAATATTTTCTAATTCAATCAAATC  488

seq1  TGCACTGGTCCCCCATATGACAAATATCTACAAAGCTCTCTCTGGGTGCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGTCCCCCATATGACAAATATCTACAAAGCTCTCTCTGGGTGCC  538

seq1  TATTCAGTTCCCTGGAGAAAGGGAAATGAAATGGCAAATGGAGGAACAGG  590
      |||||||||||||||||||| ||||||||||  |||||||||||||||||
seq2  TATTCAGTTCCCTGGAGAAAAGGAAATGAAAATGCAAATGGAGGAACAGG  588

seq1  CGAATTAAGAAAGTATGAATGAATTTGAATTTGAGGAGCTCTATGAAGGC  640
      ||| ||||||||| ||||||||||||||||| |||||||||||| |||||
seq2  CGAGTTAAGAAAGCATGAATGAATTTGAATTCGAGGAGCTCTATTAAGGC  638

seq1  TTTTGCAAAGACAACCATCCCAGTACACAAACTCCAGAGAAGGCCAAAGA  690
      ||||| ||||||||||||||| ||||||||||||||||||||||||| ||
seq2  TTTTGAAAAGACAACCATCCCGGTACACAAACTCCAGAGAAGGCCAAGGA  688

seq1  TCTACGGGGTTATTTAAATGAATAATAATAATAATAATATATTATGTATA  740
      ||||||||||||||||||||      ||||||||||||||||||||||||
seq2  TCTACGGGGTTATTTAAATG------AATAATAATAATATATTATGTATA  732

seq1  TATATTTCTGGCAACCATAAAATTAATTAAAACATCACCATGAAACCTAA  790
      |||| ||||||| ||||||||||||||||||||||||||||| |||| ||
seq2  TATA-TTCTGGCCACCATAAAATTAATTAAAACATCACCATG-AACCCAA  780

seq1  TTCACAGGATCTCAAACTTCCTGATAATGGTAAGATATCCACAACAGAAT  840
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCACAGGATCTCAAACTTCCTGATAATGGTAAGATATCCACCACAGAAT  830

seq1  TGAGATAGTGGAGGTAGAAAATGCAACCATGCTCCACACACCTGCCCTGC  890
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGAGATAGTGGAGGCAGAAAATGCAACCATGCTCCACACACCTGCCCTGC  880

seq1  TCCTGCCCATTAACCAGTACAACAGCTCCTCTGACCTGGAAGGTGACAGG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCATTAACCAGTACAACAGCTCCTCTGACCTGGAAGGTGACAGG  930

seq1  ACCAGCTGCTCAATGTCCTAGGAGGCCAGCACAGCAACTGCTGCTTAAGG  990
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGCTGAATGTCCTAGGAGGCCAGCACAGCAACTGCTGCTTAAGG  980

seq1  AAGGTTTCATGTTCCACTAATACTAGGCACAAGTTTCCCTCCAGGACTTC  1040
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCATGTTCCACTAATACTAGGCACAAGTTTCCCTCCAGGACTTC  1030

seq1  CTGACCACAAGGCAACCAAGATACAAAGAGAATGATGAAACCTAGGAACT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCACAAGGCAACCAAGATACAAAGAGAATGATGAAACCTAGGAACT  1080

seq1  TCCCTTCACTTCTGCCTAGCCCCGCCTTCTGGACCCGCCCAATATTCAAC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCACTTCTGCCTAGCCCCGCCTTCTGGACCCGCCCAATATTCAAC  1130

seq1  AGGTTCCTGGAATTC  1155
      |||||||||||||||
seq2  AGGTTCCTGGAATTC  1145