BAC Information

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BAC

Clone NameB6Ng01-337D10
Chromosome4 (Build37)
Map Location 54,101,278 - 54,102,419
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337D10.bB6Ng01-337D10.g
ACCGA121906GA121907
length1,1781,148
definitionB6Ng01-337D10.b B6Ng01-337D10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaaaagagggagcgcaaatgactgataaacacttaatgttcaa
tacccttagccatccgggaaatgcaaatgaaatctactttatgattatat
cttacacctattggaatggctaagagcaacagaacaagtgacagttcatg
ctgaaaaggatgtctaagaagggaaacacttatccattgctggcaggagg
gcaaacttgcaccgcccatatggaaatcagtatgctaggtcctcaggaag
atgggaatcaatctacctcaagatccagtcatacaattcttgagcctgta
cccaaagaatactttatcctaccacagagacccttgctcaaccatattca
ttgcttctctgtttataatagccagctggaaacaacctagatgtctgtca
atagaagaatggaatatatacatattttttcacatgatatatatatacat
ataacatatattatattaatatggtatatatgtacatatacacatataca
aataacataaatatacacatatgatatatggcattatacatatcacatat
atgcatatatcatgtataaatatataaaattgtatgtgcatattatatat
aatatatgtgttctatattatataatatcttaaatatataatatatcata
tatatagtacatttacacaacaaagtattactcagatatttttccaaaaa
gcaatttccaggtagatggatagaactagtaaaaaaatcattctgagtga
gttaactgagacccagaaaatcaaatatagtatatactcacttatatgtg
aatattagctgttaagtcaatgataaccaagctacaatccatagaaccac
agaggttagatatagagtaaaagactatagggaagaatagatctccctag
gaaatgaaatgtttctggctggggatagagagggcctggaacagaggaat
caagtggggaagggtgggggaaaggagacaggtagggaatacaggaagga
aatgggcttacattagggacaatttgaggtggtggtaagaaatctaggac
agtagagtctcctaaaatatatacattcatgaggcagtctaaatgaaatc
atccaattattggggaagaatgcagtctaatcctaacttcctgtcaacca
atgaaagattcaaggtatcccagaagtg
gaattctcatttgggctctgtgactcttaccaaagaaatggcatagtaga
aagggccaaatggaagctcacggaatttttcctttctgtgaagaatagaa
attcaaggcagtattctacctttggagaatttttcagttattagtacttc
tgtgaaagaagtcaataacgtgtgatggagattcccataatgttattatt
cttaattccccagtgtggtcttagagacatttggagtagcttaatactga
tagaatacaaaagacactgtggattattcttagtataaatttgataaaaa
taaagttagtgctaacagtgctgcagcacatccgaaagatcgtccattat
tactaagtatgatttgttctgggaatctgaagagagttcctttatgttaa
aatgaaaagaagctgattagtacagaccataacaattctaggtaatacaa
caagagctgtatgtcagtactagtagatagtacaatgtacttggtaatgg
ctagcctagattttataaaaataactcctaagaaactaagagtgtgattc
tttttaacatactaaaaatgaactactaaaaaccaaaccaatactgaaat
gtgagacttattacttgcatcttcaggaaaaaaagtattacttttttttt
cctaaaaattctaggcaatgtaatacattagcaaacagaaatgagacatg
tgactgttataaaggagaagcaaagccatggctatttggatatgattttc
tgagaaaaatggacaagaagtttgaagaggtgaggaagagggaggtggat
ctcagaggagttagaagaggaaaaaggagcaaaactatgatcaaaacaca
ttgcaagagattcttaaataagtaacaaaaatagcatatgaaaagaaagc
ccaagaatacaaactgtaaatcacttagaactgacgaattcagtaaaata
gtcatacataagacaaataaaagcaccacatatttttctataataaaata
ttgagaatatgatatgagagaatgaaaaaacatacccaaaatgtgttact
aaaaattgggtctgagagatggaatggattagttcaaggacactgctact
caatctttgaggtacaggcatccacataagcagctcaacaaaacccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_54101278_54102419
seq2: B6Ng01-337D10.g_67_1214

seq1  GAATTCTCATTTGGGCTCTGTGACTCTTACCAAAGAAATGGCATAGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTGGGCTCTGTGACTCTTACCAAAGAAATGGCATAGTAGA  50

seq1  AAGGGCCAAATGGAAGCTCACGGAATTTTTCCTTTCTGTGAAGAATAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCAAATGGAAGCTCACGGAATTTTTCCTTTCTGTGAAGAATAGAA  100

seq1  ATTCAAGGCAGTATTCTACCTTTGGAGAATTTTTCAGTTATTAGTACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGGCAGTATTCTACCTTTGGAGAATTTTTCAGTTATTAGTACTTC  150

seq1  TGTGAAAGAAGTCAATAACGTGTGATGGAGATTCCCATAATGTTATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGAAGTCAATAACGTGTGATGGAGATTCCCATAATGTTATTATT  200

seq1  CTTAATTCCCCAGTGTGGTCTTAGAGACATTTGGAGTAGCTTAATACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTCCCCAGTGTGGTCTTAGAGACATTTGGAGTAGCTTAATACTGA  250

seq1  TAGAATACAAAAGACACTGTGGATTATTCTTAGTATAAATTTGATAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATACAAAAGACACTGTGGATTATTCTTAGTATAAATTTGATAAAAA  300

seq1  TAAAGTTAGTGCTAACAGTGCTGCAGCACATCCGAAAGATCGTCCATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTAGTGCTAACAGTGCTGCAGCACATCCGAAAGATCGTCCATTAT  350

seq1  TACTAAGTATGATTTGTTCTGGGAATCTGAAGAGAGTTCCTTTATGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGTATGATTTGTTCTGGGAATCTGAAGAGAGTTCCTTTATGTTAA  400

seq1  AATGAAAAGAAGCTGATTAGTACAGACCATAACAATTCTAGGTAATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAGAAGCTGATTAGTACAGACCATAACAATTCTAGGTAATACAA  450

seq1  CAAGAGCTGTATGTCAGTACTAGTAGATAGTACAATGTACTTGGTAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTGTATGTCAGTACTAGTAGATAGTACAATGTACTTGGTAATGG  500

seq1  CTAGCCTAGATTTTATAAAAATAACTCCTAAGAAACTAAGAGTGTGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTAGATTTTATAAAAATAACTCCTAAGAAACTAAGAGTGTGATTC  550

seq1  TTTTTAACATACTAAAAATGAACTACTAAAAACCAAACCAATACTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACATACTAAAAATGAACTACTAAAAACCAAACCAATACTGAAAT  600

seq1  GTGAGACTTATTACTTGCATCTTCAGGAAAAAAAGTATTACTTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACTTATTACTTGCATCTTCAGGAAAAAAAGTATTACTTTTTTTTT  650

seq1  CCTAAAAATTCTAGGCAATGTAATACATTAGCAAACAGAAATGAGACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAATTCTAGGCAATGTAATACATTAGCAAACAGAAATGAGACATG  700

seq1  TGACTGTTATAAAGGAGAAGCAAAGCCATGGCTATTTGGATATGATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTATAAAGGAGAAGCAAAGCCATGGCTATTTGGATATGATTTTC  750

seq1  TGAGAAAAATGGACAAGAAGTTTGAAGAGGTGAGGAAGAGGGAGGTGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAATGGACAAGAAGTTTGAAGAGGTGAGGAAGAGGGAGGTGGAT  800

seq1  CTCAGAGGAGTTAGAAGAGGAAAAAGGAGCAAAACTATGATCAAAACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGAGTTAGAAGAGGAAAAAGGAGCAAAACTATGATCAAAACACA  850

seq1  TTGCAAGAGATTCTTAAATAAGTAACAAAAATAGCATATGAAAAGAAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGAGATTCTTAAATAAGTAACAAAAATAGCATATGAAAAGAAAGC  900

seq1  CCAAGAATACAAACTGTAAATCACTTAGAACTGACGAATTCAGTAAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAATACAAACTGTAAATCACTTAGAACTGACGAATTCAGTAAAATA  950

seq1  GTCATACATAAGACAAATAAAAGCACCAACATATTTTTCTATAATAAAAT  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTCATACATAAGACAAATAAAAGCACC-ACATATTTTTCTATAATAAAAT  999

seq1  ATTGAG-ATATGATATGAGAG-ATG-AAAAACATAACCAAAATGTGTTAC  1047
      |||||| |||||||||||||| ||| ||||||||| ||||||||||||||
seq2  ATTGAGAATATGATATGAGAGAATGAAAAAACATACCCAAAATGTGTTAC  1049

seq1  TAAAAATT-GGTCTGGAGAGATGG-ATGGATTAG-TCAAGGACACTTGCT  1094
      |||||||| ||||| ||||||||| ||||||||| |||||||||| ||||
seq2  TAAAAATTGGGTCT-GAGAGATGGAATGGATTAGTTCAAGGACAC-TGCT  1097

seq1  ACTCAATC-TTGAGGTACA-GCACCCACATTAGGCAGCTCA--CAAACCC  1140
      |||||||| |||||||||| ||| ||||| || ||||||||   ||||||
seq2  ACTCAATCTTTGAGGTACAGGCATCCACA-TAAGCAGCTCAACAAAACCC  1146

seq1  CT  1142
      ||
seq2  CT  1148