BAC Information

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BAC

Clone NameB6Ng01-337D14
Chromosome4 (Build37)
Map Location 145,660,377 - 145,730,609
singlet/doubletdoublet
Overlap geneLOC100041433, LOC433790, LOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337D14.bB6Ng01-337D14.g
ACCGA121914GA121915
length1,1291,126
definitionB6Ng01-337D14.b B6Ng01-337D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,660,377 - 145,661,016)(145,729,480 - 145,730,609)
sequence
gaattctctgatgctttctcagagtgaatttgtcagtaaagcatttgtca
cactcactgcatttgtaaggtttctttcctgtatgaattctctgatgctt
tcccagaatgaatttgtcagtaaagcatttgtcgcattcactacatttgt
aaggtttctctcctgtatgaattctctgatgaatactaagatgggattgt
tgggtaaagcatttgtcacattcactgcatttgtaaggtttctctccagt
atgaattctctgatgaactctcagatagcctttgtcagtaaagcatttgt
cacactcactgcatttgtaaggtttctctccagtatgaattctctgatga
actctcagatagcctttgtcagtaaagcatttgtcacactcactgcattt
gtaaggtttctttcctgtatgaattctctgatgctttcccagaatgaatt
tgtcagtaaagcatttgtcgcattcactacatttgtaaggtttctctcct
gaatgaattctacgatgaaaactaagatgggatggttgggtaaagcattt
gtcacactcactgcatttgtaaggtttctctccagtatgaattctctgat
gaactctcagatagcctttgtcagtaaagcatttgtcacactcactgcat
ttgtaaggtttctctccagtatgaattctctgatgaactctcagatagcc
tttgtcagtaaaacatttgtcacactcactgcatttgtaaggtttctctc
ccgtatgaattctctgatgctttctcagagtgcatttgtcagtaaagcat
ttgtcgcattcactacatttgtaaggtttctctcctgaatgaattgtatg
atgaatactaagatgggaaggttgggtaaagcatttgtcactttcactat
atttgtaagatttctttcctggctttctctgctgactttgaagactgtca
ctctgagtaaagcatttgtcaaattccaccacaagtgtaagtgttcattt
cactattgtttgtctcacaatgggtttatgtttagaaaccaaaactcatc
agattttatttctgttgtgtctttcttctcatggtgggatctgatggaga
cttatggatagaagaccccttcaaacagt
gaattcatcagagaattcatacaggagagaaaccttacaaatgtagtgaa
tgtgacaaatgctttactgaaaaaggccatcaaagaattcatacaggaga
gataccttacaaatagtttgtatgtgacaaatacaatacaatgtcagtct
gagaaatcatcagtttttaatacagtagagaatatttataaatgaagtga
acgagacaatcctttaccaagatatatcatcttaaaaatcattagagaat
acttacagaagagaaacttttcaattatatcaaaggtatgaatcctttac
tcttggcctatttcctagaatgttaacagtgaatacttacaggatacaaa
cttaactcatgcattgtatgaagaaatatctttgacttcatttcaggtca
aagagaatatctaataactttttaggggaaagtatttctgttggggaaag
tgtggcctgtgttttattcacgttctattcttgacaacaattgaggctcc
acactagagaattagtatgattatgaaaatcatgtgaaaactttcatgca
atgttcaaatcttaaataatgtcaactattttttgcttgaagaaactctg
aaaatgtaaaaatgtagaaagcttttcatgatacctttttacttgttcac
ccttaaatgttacaagatgaagacaagttgggaagtgaggagatattatt
gtgtaacacattcattgagacagaaataatccatttcaaaaggaaactat
ttaaggtctttaatgcagtcctcaaaatatctaataaaactggtaacatt
ctgtatatttaattcaaatgagccaattgagaaaaattatacttaaaaga
atatctggcaaactgagccacccagacagcatattctttatcctataaat
atgcttacagatgtgaagtgtgcttcaagtattcagtaataataatttct
tctcaaatgcttggttcacattataggataacaactgatcattatttcca
tttattgaacgaagtcctataggtctctgaaaaatgctgaccgtgaatac
atatacaagaacattgtggtgtctggtctgttgtgctaatactcacttct
acgtaggaaataaaaatagatttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145660377_145661016
seq2: B6Ng01-337D14.b_537_1171

seq1  TCTCCTGAATGAATTCTACGATGAAAACTAAGATGGGATGGTTGGGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAATGAATTCTACGATGAAAACTAAGATGGGATGGTTGGGTAAA  50

seq1  GCATTTGTCACACTCACTGCATTTGTAAGGTTTCTCTCCAGTATGAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTCACACTCACTGCATTTGTAAGGTTTCTCTCCAGTATGAATTC  100

seq1  TCTGATGAACTCTCAGATAGCCTTTGTCAGTAAAGCATTTGTCACACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGAACTCTCAGATAGCCTTTGTCAGTAAAGCATTTGTCACACTCA  150

seq1  CTGCATTTGTAAGGTTTCTCTCCAGTATGAATTCTCTGATGAACTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTGTAAGGTTTCTCTCCAGTATGAATTCTCTGATGAACTCTCAG  200

seq1  ATAGCCTTTGTCAGTAAAGCATTTGTCACACTCACTGCATTTGTAAGGTT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATAGCCTTTGTCAGTAAAACATTTGTCACACTCACTGCATTTGTAAGGTT  250

seq1  TCTCTCCCGTATGAATTCTCTGATGCTTTCTCAGAGTGCATTTGTCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCGTATGAATTCTCTGATGCTTTCTCAGAGTGCATTTGTCAGTA  300

seq1  AAGCATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGAATGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGAATGAAT  350

seq1  TGTATGATGAATACTAAGATGGGAAGGTTGGGTAAAGCATTTGTCACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGATGAATACTAAGATGGGAAGGTTGGGTAAAGCATTTGTCACTTT  400

seq1  CACTATATTTGTAAGATTTCTTTCCTGGCTTTCTCTGCTGACTTTGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATTTGTAAGATTTCTTTCCTGGCTTTCTCTGCTGACTTTGAAGA  450

seq1  CTGTCACTCTGAGTAAAGCATTTGTCAAATT-CACCACAAGTGTAAGTGT  499
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGTCACTCTGAGTAAAGCATTTGTCAAATTCCACCACAAGTGTAAGTGT  500

seq1  TCATTTCACTATTGTTTTGTCTCACAATGGGTTTATGTTTAGAAACCAAA  549
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCATTTCACTATTG-TTTGTCTCACAATGGGTTTATGTTTAGAAACCAAA  549

seq1  ACCTCATCAAGATTTTTATTTCTGTTGTGTTCTTTCTTCTCTATGTGGGT  599
      | |||||| ||| |||||||||||||||| |||||||||||   ||||| 
seq2  A-CTCATC-AGA-TTTTATTTCTGTTGTG-TCTTTCTTCTCATGGTGGGA  595

seq1  TCCTTGATTGAGACTAAT-GATAGAAGACCCCTTTAAACAGT  640
      ||  |||| |||||| || ||||||||||||||| |||||||
seq2  TC--TGATGGAGACTTATGGATAGAAGACCCCTTCAAACAGT  635

seq1: chr4_145729480_145730609
seq2: B6Ng01-337D14.g_63_1188 (reverse)

seq1  TGGAAATCTA-TTTTATTCCTTACGGTAGAGTGGAGTATTAAGGCACAAC  49
      |||||||||| ||||||| | ||| |||||   ||||||||  |||||||
seq2  TGGAAATCTATTTTTATTTCCTAC-GTAGAAGTGAGTATTA--GCACAAC  47

seq1  AGGACCAGACACCACAATG-TCTTGTAATATGTATCAACGGTCAGCATTT  98
      | ||||||||||||||||| |||||| ||||||||  |||||||||||||
seq2  A-GACCAGACACCACAATGTTCTTGT-ATATGTATTCACGGTCAGCATTT  95

seq1  TTCAGAGACCTATAGGACTTTCGTTCAATAAATGGGAAATAATGATCAGT  148
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  TTCAGAGACCTATAGGAC-TTCGTTCAATAAAT-GGAAATAATGATCAGT  143

seq1  TGTTATCCTATAATGTGAACCAAGCATTTGAGAAG-AATTATTATTACTG  197
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTTATCCTATAATGTGAACCAAGCATTTGAGAAGAAATTATTATTACTG  193

seq1  AATACTCGAAGCACACTTCACATCTGTAAGCATATTTATAGGATAAAGAA  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGAAGCACACTTCACATCTGTAAGCATATTTATAGGATAAAGAA  243

seq1  TATGCTGTCTGGGTGGCTCAGTTTGCCAGATATTCTTTTAAGTATAATTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTCTGGGTGGCTCAGTTTGCCAGATATTCTTTTAAGTATAATTT  293

seq1  TTCTCAATTGGCTCATTTGAATTAAATATACAGAATGTTACCAGTTTTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATTGGCTCATTTGAATTAAATATACAGAATGTTACCAGTTTTAT  343

seq1  TAGATATTTTGAGGACTGCATTAAAGACCTTAAATAGTTTCCTTTTGAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTTGAGGACTGCATTAAAGACCTTAAATAGTTTCCTTTTGAAA  393

seq1  TGGATTATTTCTGTCTCAATGAATGTGTTACACAATAATATCTCCTCACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATTTCTGTCTCAATGAATGTGTTACACAATAATATCTCCTCACT  443

seq1  TCCCAACTTGTCTTCATCTTGTAACATTTAAGGGTGAACAAGTAAAAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTTGTCTTCATCTTGTAACATTTAAGGGTGAACAAGTAAAAAGG  493

seq1  TATCATGAAAAGCTTTCTACATTTTTACATTTTCAGAGTTTCTTCAAGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGAAAAGCTTTCTACATTTTTACATTTTCAGAGTTTCTTCAAGCA  543

seq1  AAAAATAGTTGACATTATTTAAGATTTGAACATTGCATGAAAGTTTTCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGTTGACATTATTTAAGATTTGAACATTGCATGAAAGTTTTCAC  593

seq1  ATGATTTTCATAATCATACTAATTCTCTAGTGTGGAGCCTCAATTGTTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTCATAATCATACTAATTCTCTAGTGTGGAGCCTCAATTGTTGT  643

seq1  CAAGAATAGAACGTGAATAAAACACAGGCCACACTTTCCCCAACAGAAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATAGAACGTGAATAAAACACAGGCCACACTTTCCCCAACAGAAAT  693

seq1  ACTTTCCCCTAAAAAGTTATTAGATATTCTCTTTGACCTGAAATGAAGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCCTAAAAAGTTATTAGATATTCTCTTTGACCTGAAATGAAGTC  743

seq1  AAAGATATTTCTTGATACAATGCATGAGTTAAGTTTGTATCCTGTAAGTA  797
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAGATATTTCTTCATACAATGCATGAGTTAAGTTTGTATCCTGTAAGTA  793

seq1  TTCACTGTTAACATTCTAGGAAATAGGCCAAGAGTAAAGGATTCATACCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTTAACATTCTAGGAAATAGGCCAAGAGTAAAGGATTCATACCT  843

seq1  TTGATATAATTGAAAAGTTTCTCTTCTGTAAGTATTCTCTAATGATTTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATAATTGAAAAGTTTCTCTTCTGTAAGTATTCTCTAATGATTTTT  893

seq1  AAGATGATATATCTTGGTAAAGGATTGTCTCGTTCACTTCATTTATAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATATATCTTGGTAAAGGATTGTCTCGTTCACTTCATTTATAAAT  943

seq1  ATTCTCTACTGTATTAAAAACTGATGATTTCTCAGACTGACATTGTATTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTACTGTATTAAAAACTGATGATTTCTCAGACTGACATTGTATTG  993

seq1  TATTTGTCACATACAAACTATTTGTAAGGTATCTCTCCTGTATGAATTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCACATACAAACTATTTGTAAGGTATCTCTCCTGTATGAATTCT  1043

seq1  CTGATGGCCTTTTTCAGTAAAGCATTTGTCACATTCACTACATTTGTAAG  1097
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGCCTTTTTCAGTAAAGCATTTGTCACATTCACTACATTTGTAAG  1093

seq1  GTTTCTCTCCTGTATGAATTCTCTGATGAATTC  1130
      |||||||||||||||||||||||||||||||||
seq2  GTTTCTCTCCTGTATGAATTCTCTGATGAATTC  1126