BAC Information

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BAC

Clone NameB6Ng01-337I08
Chromosome4 (Build37)
Map Location 35,158,361 - 35,299,596
singlet/doubletdoublet
Overlap gene3110043O21Rik
Upstream geneLOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, LOC620559
Downstream geneLOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337I08.bB6Ng01-337I08.g
ACCGA122118GA122119
length1,0771,117
definitionB6Ng01-337I08.b B6Ng01-337I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,298,503 - 35,299,596)(35,158,361 - 35,159,477)
sequence
gaattcattgctttaaaaaacaaagcctcaccacaccctttgcccagtca
tcttcagaaagacccactaccaaaataagaaagaaagaaaaagagcaaag
ctttataataaacttcagaaatgtctaacacccagccacttttccacatc
cttctgcaagagcagacccaaagatgtgagagtggccacccgttctccct
cttcctagtgtcactccctagggtcacatttgcagttacgtgtgccctta
gaggtgtctgctcagccatgaccctctgtcttcctgctcctctcctcctc
ctctccacttacaattgattggacacggaatccaactaggtcaatgagct
cctgtatccctaggacccgaaattctaatccagtcactcactagtaagag
ccacacatttgataactacctatgtctatcttctaccatgtacacaagag
ccaaaacaattttaaattttttttaaatccccagaaagagaagatgcaat
ctatgcagacagaaagaaagaagagaggaagacacagaaacacagagacc
agaagaaaaataaagagaaagtaagaacagcacacagcttgccagctgat
tccaggcacttgctgaaacccgaaattttacgttacacctcattgtcctt
agaaactgttccctctgttaaagcaacagctgcttcaagcctccgcttgt
catgcagaaggaatcggcttcttccaattttattagttcttaccggtggg
aaaaaatataattcctataattaattttatactccaagtcacttatagtc
acttggcttccctgataggacatcaagggacacataaacagcctgcagct
agaccgtgtgtccaggcactcactagctacacaagatcaagaaagacact
tctcagagcttctgactttgtcatttgtagaaactggggtagtaattccc
actttatagcatctttgaagggaaatgtattgagatgtactgcagaggag
tatatgtgactgtgtagctacacatgtagttatatatcatcatatctctg
attagtcaatactttgtaaatatactg

gaattcttactcattctattagagtcagttctgctagagggtgtcagaga
aatttggtaaaattacattgcttccttatactatggggttatttcaattg
cagcctactgtttagatgataatgtatgatatgctagtgatgataaaagt
cagatcatgttcaactgtagaacgaattaccttatttactttctctgcac
tgctgccaactacaacggaacagccacaggtctgcaggtgtgagctgatg
gcactgtaggtaaggaaaacattgacggagttacagcttcacaacgacaa
agcccagcaaggttaggacaacacacaagagcttgatgaacaccaaagcc
atctgcatgatgtcatcttttattcgggtaaaaccctgcattttttaggg
acctttcacaggtcttaagacaactcgggacaggagcggctcactgctaa
agtgtgcctgccgctcttgcagagacaatccagaacccacatggagactc
acaaccatctagtttcaagaaagccaaagccctcttttccctttttcagg
taccaggcatacataaatatggtgtacatacacatatgcaggtattcaaa
cacacataaaattaaatccattttaaggaaaaagataccccagttaggta
atagatgccgttaagcacggtcacctggtatttcactgtgagcttattat
aggaagggaatgtgacatagaagtaaacactttaacaaaatcctattcac
ttctctctcgttactgatgacagtctgtaactgtaaaggagactacaaca
ggagatgagggacaaacagagaacacagccctgcagaggaacacacagct
gctcggtcagcgtactggctggttttgtgtcaacttgaaacaggctggag
ttatcatagagaaaggagtttcagttggggaaatgcctccatgagatcag
ctgtgggggcatttttctcaattagtgatcaagggggcagggtccttgtg
ggtgggaccatctctgggctgtagtcttggggtctatagaaaggcaggct
agtaggtaacatttcgtcaatggctctgcatctggcttctgttcctgatc
tgacttccagctcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35298503_35299596
seq2: B6Ng01-337I08.b_45_1121 (reverse)

seq1  CAGTATATTTACAAAAGTATTTGACTAATCAAGAAGATAATGATGATATA  50
      |||||||||||| |||||| |||||||||||   |||| |||||||||||
seq2  CAGTATATTTAC-AAAGTA-TTGACTAATCA--GAGAT-ATGATGATATA  45

seq1  ATTACTTACAATGTTGTAAGCTACACAGTTCACATATACCTCTTCTTCCA  100
        ||  ||| ||| ||| |||||||||| ||||||||| ||| || | ||
seq2  --TAACTAC-ATG-TGT-AGCTACACAG-TCACATATA-CTCCTC-TGCA  87

seq1  GTACATTCTCCAATACATTTCCCCTTCAAAGATGCTTATAAAGTGGGAAT  150
      ||||| ||| |||||||||| |||||||||||||| ||||||||||||||
seq2  GTACA-TCT-CAATACATTT-CCCTTCAAAGATGC-TATAAAGTGGGAAT  133

seq1  TACTACCCCAGTTTCTACAAATGACAAAGTCAGAAGCTCTGAGAAGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCCCAGTTTCTACAAATGACAAAGTCAGAAGCTCTGAGAAGTGTC  183

seq1  TTTCTTGATCTTGTGTAGCTAGTGAGTGCCTGGACACACGGTCTAGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGATCTTGTGTAGCTAGTGAGTGCCTGGACACACGGTCTAGCTGC  233

seq1  AGGCTGTTTATGTGTCCCTTGATGTCCTATCAGGGAAGCCAAGTGACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTTATGTGTCCCTTGATGTCCTATCAGGGAAGCCAAGTGACTAT  283

seq1  AAGTGACTTGGAGTATAAAATTAATTATAGGAATTATATTTTTTCCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTTGGAGTATAAAATTAATTATAGGAATTATATTTTTTCCCACC  333

seq1  GGTAAGAACTAATAAAATTGGAAGAAGCCGATTCCTTCTGCATGACAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAACTAATAAAATTGGAAGAAGCCGATTCCTTCTGCATGACAAGC  383

seq1  GGAGGCTTGAAGCAGCTGTTGCTTTAACAGAGGGAACAGTTTCTAAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTGAAGCAGCTGTTGCTTTAACAGAGGGAACAGTTTCTAAGGAC  433

seq1  AATGAGGTGTAACGTAAAATTTCGGGTTTCAGCAAGTGCCTGGAATCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTGTAACGTAAAATTTCGGGTTTCAGCAAGTGCCTGGAATCAGC  483

seq1  TGGCAAGCTGTGTGCTGTTCTTACTTTCTCTTTATTTTTCTTCTGGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGCTGTGTGCTGTTCTTACTTTCTCTTTATTTTTCTTCTGGTCTC  533

seq1  TGTGTTTCTGTGTCTTCCTCTCTTCTTTCTTTCTGTCTGCATAGATTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTGTGTCTTCCTCTCTTCTTTCTTTCTGTCTGCATAGATTGCA  583

seq1  TCTTCTCTTTCTGGGGATTTAAAAAAAATTTAAAATTGTTTTGGCTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTTTCTGGGGATTTAAAAAAAATTTAAAATTGTTTTGGCTCTTG  633

seq1  TGTACATGGTAGAAGATAGACATAGGTAGTTATCAAATGTGTGGCTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGGTAGAAGATAGACATAGGTAGTTATCAAATGTGTGGCTCTTA  683

seq1  CTAGTGAGTGACTGGATTAGAATTTCGGGTCCTAGGGATACAGGAGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAGTGACTGGATTAGAATTTCGGGTCCTAGGGATACAGGAGCTCA  733

seq1  TTGACCTAGTTGGATTCCGTGTCCAATCAATTGTAAGTGGAGAGGAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTAGTTGGATTCCGTGTCCAATCAATTGTAAGTGGAGAGGAGGAG  783

seq1  GAGAGGAGCAGGAAGACAGAGGGTCATGGCTGAGCAGACACCTCTAAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGCAGGAAGACAGAGGGTCATGGCTGAGCAGACACCTCTAAGGG  833

seq1  CACACGTAACTGCAAATGTGACCCTAGGGAGTGACACTAGGAAGAGGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTAACTGCAAATGTGACCCTAGGGAGTGACACTAGGAAGAGGGAG  883

seq1  AACGGGTGGCCACTCTCACATCTTTGGGTCTGCTCTTGCAGAAGGATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGTGGCCACTCTCACATCTTTGGGTCTGCTCTTGCAGAAGGATGTG  933

seq1  GAAAAGTGGCTGGGTGTTAGACATTTCTGAAGTTTATTATAAAGCTTTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGGCTGGGTGTTAGACATTTCTGAAGTTTATTATAAAGCTTTGC  983

seq1  TCTTTTTCTTTCTTTCTTATTTTGGTAGTGGGTCTTTCTGAAGATGACTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTTCTTTCTTATTTTGGTAGTGGGTCTTTCTGAAGATGACTG  1033

seq1  GGCAAAGGGTGTGGTGAGGCTTTGTTTTTTAAAGCAATGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGGTGTGGTGAGGCTTTGTTTTTTAAAGCAATGAATTC  1077


seq1: chr4_35158361_35159477
seq2: B6Ng01-337I08.g_64_1180

seq1  GAATTCTTACTCATTCTATTAGAGTCAGTTCTGCTAGAGGGTGTCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTCATTCTATTAGAGTCAGTTCTGCTAGAGGGTGTCAGAGA  50

seq1  AATTTGGTAAAATTACATTGCTTCCTTATACTATGGGGTTATTTCAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTAAAATTACATTGCTTCCTTATACTATGGGGTTATTTCAATTG  100

seq1  CAGCCTACTGTTTAGATGATAATGTATGATATGCTAGTGATGATAAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTACTGTTTAGATGATAATGTATGATATGCTAGTGATGATAAAAGT  150

seq1  CAGATCATGTTCAACTGTAGAACGAATTACCTTATTTACTTTCTCTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATGTTCAACTGTAGAACGAATTACCTTATTTACTTTCTCTGCAC  200

seq1  TGCTGCCAACTACAACGGAACAGCCACAGGTCTGCAGGTGTGAGCTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCAACTACAACGGAACAGCCACAGGTCTGCAGGTGTGAGCTGATG  250

seq1  GCACTGTAGGTAAGGAAAACATTGACGGAGTTACAGCTTCACAACGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTAGGTAAGGAAAACATTGACGGAGTTACAGCTTCACAACGACAA  300

seq1  AGCCCAGCAAGGTTAGGACAACACACAAGAGCTTGATGAACACCAAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCAAGGTTAGGACAACACACAAGAGCTTGATGAACACCAAAGCC  350

seq1  ATCTGCATGATGTCATCTTTTATTCGGGTAAAACCCTGCATTTTTTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATGATGTCATCTTTTATTCGGGTAAAACCCTGCATTTTTTAGGG  400

seq1  ACCTTTCACAGGTCTTAAGACAACTCGGGACAGGAGCGGCTCACTGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCACAGGTCTTAAGACAACTCGGGACAGGAGCGGCTCACTGCTAA  450

seq1  AGTGTGCCTGCCGCTCTTGCAGAGACAATCCAGAACCCACATGGAGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCCTGCCGCTCTTGCAGAGACAATCCAGAACCCACATGGAGACTC  500

seq1  ACAACCATCTAGTTTCAAGAAAGCCAAAGCCCTCTTTTCCCTTTTTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCTAGTTTCAAGAAAGCCAAAGCCCTCTTTTCCCTTTTTCAGG  550

seq1  TACCAGGCATACATAAATATGGTGTACATACACATATGCAGGTATTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGCATACATAAATATGGTGTACATACACATATGCAGGTATTCAAA  600

seq1  CACACATAAAATTAAATCCATTTTAAGGAAAAAGATACCCCAGTTAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAAAATTAAATCCATTTTAAGGAAAAAGATACCCCAGTTAGGTA  650

seq1  ATAGATGCCGTTAAGCACGGTCACCTGGTATTTCACTGTGAGCTTATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGCCGTTAAGCACGGTCACCTGGTATTTCACTGTGAGCTTATTAT  700

seq1  AGGAAGGGAATGTGACATAGAAGTAAACACTTTAACAAAATCCTATTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGAATGTGACATAGAAGTAAACACTTTAACAAAATCCTATTCAC  750

seq1  TTCTCTCTCGTTACTGATGACAGTCTGTAACTGTAAAGGAGACTACAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCGTTACTGATGACAGTCTGTAACTGTAAAGGAGACTACAACA  800

seq1  GGAGATGAGGGACAAACAGAGAACACAGCCCTGCAGAGGAACACACAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGAGGGACAAACAGAGAACACAGCCCTGCAGAGGAACACACAGCT  850

seq1  GCTCGGTCAGCGTACTGGCTGGTTTTGTGTCAACTTGAAACAGGCTGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGTCAGCGTACTGGCTGGTTTTGTGTCAACTTGAAACAGGCTGGAG  900

seq1  TTATCATAGAGAAAGGAGTTTCAGTTGGGGAAATGCCTCCATGAGATCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTATCATAGAGAAAGGAGTTTCAGTTGGGGAAATGCCTCCATGAGAT-CA  949

seq1  GCTGT-GGGGCA-TTTTCTCAATTAGTGATCAAGGGGGCAGGGTCCCTTG  998
      ||||| |||||| ||||||||||||||||||||||||||||||| |||||
seq2  GCTGTGGGGGCATTTTTCTCAATTAGTGATCAAGGGGGCAGGGT-CCTTG  998

seq1  TGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGGGTCTATAAGAAAGCAA  1048
      |||||||||||||||||||||| ||||||||||||||||||  || ||| 
seq2  TGGGTGGGACCATCTCTGGGCT-GTAGTCTTGGGGTCTATAGAAAGGCAG  1047

seq1  GCTAGTAAGTAACA-TTCCTCCATGGCCTCTGCATCT-GCTCCTGTTTCC  1096
      ||||||| |||||| ||| || |||| |||||||||| ||| ||| ||||
seq2  GCTAGTAGGTAACATTTCGTCAATGG-CTCTGCATCTGGCTTCTG-TTCC  1095

seq1  TGATCTGAGTTCCAG-TCCTGA  1117
      |||||||| |||||| ||||||
seq2  TGATCTGACTTCCAGCTCCTGA  1117


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