BAC Information

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BAC

Clone NameB6Ng01-338D17
Chromosome13 (Build37)4 (Build37)
Map Location 103,675,124 - 103,675,20723,918,239 - 23,919,347
singlet/doubletsingletsinglet
Overlap geneMast4
Upstream geneCd180
Downstream geneEG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338D17.bB6Ng01-338D17.g
ACCGA122602GA122603
length1,0121,115
definitionB6Ng01-338D17.b B6Ng01-338D17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,675,124 - 103,675,207)(23,918,239 - 23,919,347)
sequence
gtttgtgagaactttattgagtatgtttgcatcgatattcataagggaaa
ttggtctgaagttctctttctttattggatctttgtgtggtttaggtatc
agagtaattgtggcttcagagaatgaattgggtagattatcttctgtttc
tattctgtggaatagtttgaggagaattgtagttaggtcttctttaaaag
tctgatagaactctatactaaacccatctggtcatggacattttttgttc
agtagactcttaatagctgcttatatttctttaggggatatgggactgtt
taggtcattaatttgatcctgatgtaatttttgtacctggtatttatcta
ggaatttgtccatttcatccaggttttccagtgttctcgagtatagtctt
ttgtagtaggatctgatgatgttttccatttcctcatgttctgttgttat
gtctcacttttcatttctgactttgttaattaggatactgtgccagtgcc
ctacagttagtctggctaagggtttatctatcttgttgattttctcaaag
aaccagctcctggtttggttgattgaatagttctttttgtttccacttgg
ttgatttcagccctaaatttgattatttcctgctgtctactcctcttggg
tgaatttgctttgttttgtcctagagcttttaggtgtgctatcaagctgc
tagtgtatggtctctttagtttctttttggaggcactcagagctgtgagt
tttcctcttaggattgctttcattgtgttttgtttgtttgtttgtttgtt
tgtttttgatttttcagacagggtttctctgtgtagcccctggctgtcct
ggaactcactttgtagaccaggctttccttgaactcagaaatctgcctgc
atctgcctcctgagtgctgggagtaaagggatgcaccaccacgcccagct
ttcattatgtttataagtttgtatgttgtggcttcattttcattaaactc
taaacagtcttt

gaattcttacctagtaactttaaatgttaacttttaataaacggtaatag
tgactgttaaaacagtattccttttttcaatatgaaagaaaatttattga
agttatctataatggctgaaaatatgaattcttttaaattcctaatattt
gtgttttaataaagggtaatagtgttgttaaaactgtattattcttttta
acatgaaagaaaaattattgaatttatctacaatggctaaaaatatgaat
tcttttaaaattctaatgtatatgagaaagccctgagatagatattattc
tcccatttaaagatgtaaagttgtagaataagaaagatggatattgtata
aaggtcttttggtcttagaagttggggggagtggagaggggctattccaa
agttcttacaaggggtcagactctgaggagttgtcagtgaaaaccctcaa
tgaattcccctttcaaactgaaaagtgtctcctccccaagtctaagccac
tttagcatgttaagcctttctccactgaggcctcagccttcccctcctta
gcttctttctctcctgctcctactcccattctgctttaggcaagatgtcc
tgccactggttgccagaaactcatctggcagatcttccagcaaaccatcc
atagcccaagcttccttgtagaaagagcacactcaaatgaatgtttagta
actttctggtagtatatttgtgctataggtttatgagtgccccattgact
ttgctaaagtacctaacacttcatatgcatctgcaggtgcctcaaaacga
aacatcaataaacaccaagttttcaattaaatctaatgtagctaaatgta
aaactatattcttgaatgatatttacctctactggagccaaaattagaaa
ttatttggtatccctcaaaataggaattgtcatgcaaactattaggagta
attttataccttttcctttaaaagttaaaaacgatggatcagagaattga
aagcccacagggatcatataagtatccattgacattgaaaaaaaaaaatg
cggtactgatcagtcctaagttaagctggtgcttgacataagggaccaaa
ccagagctccagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_103675124_103675207
seq2: B6Ng01-338D17.b_861_944 (reverse)

seq1  GATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAG  50
      |||||||||||||||||  ||||||||||||| |||||||||||||||||
seq2  GATTTCTGAGTTCAAGGAAAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  50

seq1  CCA-GGGCTACACAGAGAAACCCTGTCTCCAAAAA  84
      ||| ||||||||||||||||||||||||  |||| 
seq2  CCAGGGGCTACACAGAGAAACCCTGTCTGAAAAA-  84


seq1: chr4_23918239_23919347
seq2: B6Ng01-338D17.g_65_1179

seq1  GAATTCTTACCTAGTAACTTTAAATGTTAACTTTTAATAAACGGTAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACCTAGTAACTTTAAATGTTAACTTTTAATAAACGGTAATAG  50

seq1  TGACTGTTAAAACAGTATTCCTTTTTTCAATATGAAAGAAAATTTATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTAAAACAGTATTCCTTTTTTCAATATGAAAGAAAATTTATTGA  100

seq1  AGTTATCTATAATGGCTGAAAATATGAATTCTTTTAAATTCCTAATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTATAATGGCTGAAAATATGAATTCTTTTAAATTCCTAATATTT  150

seq1  GTGTTTTAATAAAGGGTAATAGTGTTGTTAAAACTGTATTATTCTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAATAAAGGGTAATAGTGTTGTTAAAACTGTATTATTCTTTTTA  200

seq1  ACATGAAAGAAAAATTATTGAATTTATCTACAATGGCTAAAAATATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAGAAAAATTATTGAATTTATCTACAATGGCTAAAAATATGAAT  250

seq1  TCTTTTAAAATTCTAATGTATATGAGAAAGCCCTGAGATAGATATTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAATTCTAATGTATATGAGAAAGCCCTGAGATAGATATTATTC  300

seq1  TCCCATTTAAAGATGTAAAGTTGTAGAATAAGAAAGATGGATATTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTAAAGATGTAAAGTTGTAGAATAAGAAAGATGGATATTGTATA  350

seq1  AAGGTCTTTTGGTCTTAGAAGTTGGGGGGAGTGGAGAGGGGCTATTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTTTGGTCTTAGAAGTTGGGGGGAGTGGAGAGGGGCTATTCCAA  400

seq1  AGTTCTTACAAGGGGTCAGACTCTGAGGAGTTGTCAGTGAAAACCCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTACAAGGGGTCAGACTCTGAGGAGTTGTCAGTGAAAACCCTCAA  450

seq1  TGAATTCCCCTTTCAAACTGAAAAGTGTCTCCTCCCCAAGTCTAAGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCCCTTTCAAACTGAAAAGTGTCTCCTCCCCAAGTCTAAGCCAC  500

seq1  TTTAGCATGTTAAGCCTTTCTCCACTGAGGCCTCAGCCTTCCCCTCCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATGTTAAGCCTTTCTCCACTGAGGCCTCAGCCTTCCCCTCCTTA  550

seq1  GCTTCTTTCTCTCCTGCTCCTACTCCCATTCTGCTTTAGGCAAGATGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTCTCTCCTGCTCCTACTCCCATTCTGCTTTAGGCAAGATGTCC  600

seq1  TGCCACTGGTTGCCAGAAACTCATCTGGCAGATCTTCCAGCAAACCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGGTTGCCAGAAACTCATCTGGCAGATCTTCCAGCAAACCATCC  650

seq1  ATAGCCCAAGCTTCCTTGTAGAAAGAGCACACTCAAATGAATGTTTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCAAGCTTCCTTGTAGAAAGAGCACACTCAAATGAATGTTTAGTA  700

seq1  ACTTTCTGGTAGTATATTTGTGCTATAGGTTTATGAGTGCCCCATTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGGTAGTATATTTGTGCTATAGGTTTATGAGTGCCCCATTGACT  750

seq1  TTGCTAAAGTACCTAACACTTCATATGCATCTGCAGGTGCCTC-AAACGA  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGCTAAAGTACCTAACACTTCATATGCATCTGCAGGTGCCTCAAAACGA  800

seq1  AACATCAATAAACACCAAGTTTTCAATTAAATCTAATGTAGCTAAATGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAATAAACACCAAGTTTTCAATTAAATCTAATGTAGCTAAATGTA  850

seq1  AAACTATATTCTTGAATGATATTTACCTCTACTGGGAGCCAAAATTAGAA  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAACTATATTCTTGAATGATATTTACCTCTACT-GGAGCCAAAATTAGAA  899

seq1  ATTTATTTGGTATCCCTCAAAATAGGAATTGTCATGCCAAACTATTA-GA  948
      | |||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  A-TTATTTGGTATCCCTCAAAATAGGAATTGTCATG-CAAACTATTAGGA  947

seq1  GTAATTTTATACCTTTTCCTTTAAAAGGTAAAAACGATGGATCAGAGAAT  998
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTAATTTTATACCTTTTCCTTTAAAAGTTAAAAACGATGGATCAGAGAAT  997

seq1  TGAAAG-CCACAGGGATCATAT-AGTATCCA-TGACAT--GAAAAAAAAA  1043
      |||||| ||||||||||||||| |||||||| ||||||   |||||||||
seq2  TGAAAGCCCACAGGGATCATATAAGTATCCATTGACATTGAAAAAAAAAA  1047

seq1  ATGC-GTACTGATCAGT-CTAAGGTAAGCTGTTGC-TGACAAAAGGACAC  1090
      |||| |||||||||||| ||||| ||||||| ||| ||||| ||||  ||
seq2  ATGCGGTACTGATCAGTCCTAAGTTAAGCTGGTGCTTGACATAAGG-GAC  1096

seq1  AAAACCAGAGCTTCAGTCT  1109
       ||||||||||| ||||||
seq2  CAAACCAGAGCTCCAGTCT  1115


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