BAC Information

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BAC

Clone NameB6Ng01-338G08
Chromosome4 (Build37)
Map Location 145,587,134 - 145,588,132
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338G08.bB6Ng01-338G08.g
ACCGA122713GA122714
length1,1371,010
definitionB6Ng01-338G08.b B6Ng01-338G08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatacaggagagaaaccttacaaatgcactgaatgtgacaaatgc
tttactttcaaaggcagtctgaggattcatcagagaattcatacaggaga
gaaaccctacaaatgtagtgaatgtgacaaatcctttactgaaaatggct
gtttgagaattcatcagagaattcatacaggagagaaaccttacaaatgc
actgaatgtgacaaatgctttactttcaaaggcagtctgaggattcatca
gagaattcatacaggagagaaaccttacaaatgcactgaatgtgacaaat
cctttactgaaaagggcaaactgagaattcatcagagaattcatacagga
gagaaaccttacaaatgtagtgaatgtgacaaatgctttactgaataagg
ccatcagagaattcatacaggagagataccttacaaatagtttgtatgtg
acaaatacaatacaatgtcagtctgagaaatcatcagtttttaatacagt
agagaatatttataaatgaagtgaacgagacaatcctttaccaagatata
tcatcttaaaaatcattagagaatacttacagaagagaaacttttcaatt
atattgaaggtatgaatcctttactcttggcctatttcctagaatgttaa
cagtgaatacttacaggatacaaacttaactcatgcattgtatgaagaaa
tatctttgacttcatttcaggtcaaagagaatatctaataactttttagg
ggaaagtatttctgttggggaaagtgtggcctgtgttttattcacgttct
attcttgacaattgaggctccacactagagaattagtatgattatgaaaa
tcatgtgaaaactttcatgcaatgttcaaatcttaaataatgtcaactat
tttttgcttgaagaaactctgaaaatgtaaaaatgtagaaagcttttcat
gacacctttttacctgttcacccttaaatgttacaagatgaagacagttg
ggaagtgaggagatattattgtgtacacattcattgagaagaaatatcca
tttccaaaggaaactatttaaggttttatgcagtctcaaatattctaata
aactggttaacattctgtatatttaatccaaatgagc
gaattcttctaagcccacctacttatgggccttttaattaattagcttcc
cacttcttcacagcaatgtttggtgttttgaatttttgcttgcttgcttg
cttgcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgct
tgcttgcttgcttgcttattcgtttctttgcttttaatttgtctttttct
taaactcatctaatcgtgcaggaatcccacactccccatcaggaaccact
cctccaactctgttgcaggctgccttccacacaacttcccaggacctact
ctgcaaagcttcttcacaaagttgctgccagactagaccagagctggatg
tagtaggacactgcacctgggttctgaacccttcagattcaatggatcct
gtctaacttctcatattgtgcgtgtagccctctgggctataaatgcacaa
aattaagcagtccctttgaattctgatgctcagaacagatacccaaaaca
aacaaaaacgtagataaaatgtccttggctcaaaccacaaaccatagagg
tatcttataaggagcacaatttatgtgatatccaagacaaagaatggaaa
acccacagtcatgatcaaggacattaaagtttgtaaacctgtgaatccac
tcagacaggaacaaaatgaatcttggtcaagaaaataacaccagatgcct
gaaggaaataaggacaatataaaatattaaaattatgttcaataggtgct
tagaaatgccacacaaaaaaaaatcctgaagagaaaatgcagtgaggcaa
taaaaatgatacatagagaacctgtgggagacagattatcagacttaaag
aaaaagtagaggaggtggatgcctcaatcaaagaaaatggtgaattaaaa
tgatgttaggtcaagggaacaatattattttactgcttgaaggatgaggc
aataaagagaaactcctttggaaaactgtcctgatctttgccaaaaaaaa
gtaggaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145587134_145588132
seq2: B6Ng01-338G08.g_64_1073

seq1  GAATTCTTCTAAGCCCACCTACTTATGGGCCTTTTAATTAATTAGCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAGCCCACCTACTTATGGGCCTTTTAATTAATTAGCTTCC  50

seq1  CACTTCTTCACAGCAATGTTTGGTGTTTTGAATTT------------TTG  88
      |||||||||||||||||||||||||||||||||||            |||
seq2  CACTTCTTCACAGCAATGTTTGGTGTTTTGAATTTTTGCTTGCTTGCTTG  100

seq1  CTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCT  138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCT  150

seq1  TGCTTGCTTGCTTGCTTATTCGTTTCTTTGCTTTTAATTTGTCTTTTTCT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTTGCTTGCTTATTCGTTTCTTTGCTTTTAATTTGTCTTTTTCT  200

seq1  TAAACTCATCTAATCGTGCAGGAATCCCACACTCCCCATCAGGAACCACT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCATCTAATCGTGCAGGAATCCCACACTCCCCATCAGGAACCACT  250

seq1  CCTCCAACTCTGTTGCAGGCTGCCTTCCACACAACTTCCCAGGACCTACT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACTCTGTTGCAGGCTGCCTTCCACACAACTTCCCAGGACCTACT  300

seq1  CTGCAAAGCTTCTTCACAAAGTTGCTGCCAGACTAGACCAGAGCTGGATG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGCTTCTTCACAAAGTTGCTGCCAGACTAGACCAGAGCTGGATG  350

seq1  TAGTAGGACACTGCACCTGGGTTCTGAACCCTTCAGATTCAATGGATCCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGACACTGCACCTGGGTTCTGAACCCTTCAGATTCAATGGATCCT  400

seq1  GTCTAACTTCTCATATTGTGCGTGTAGCCCTCTGGGCTATAAATGCACAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACTTCTCATATTGTGCGTGTAGCCCTCTGGGCTATAAATGCACAA  450

seq1  AATTAAGCAGTCCCTTTGAATTCTGATGCTCAGAACAGATACCCAAAACA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCAGTCCCTTTGAATTCTGATGCTCAGAACAGATACCCAAAACA  500

seq1  AACAAAAACGTAGATAAAATGTCCTTGGCTCAAACCACAAACCATAGAGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACGTAGATAAAATGTCCTTGGCTCAAACCACAAACCATAGAGG  550

seq1  TATCTTATAAGGAGCACAATTTATGTGATATCCAAGACAAAGAATGGAAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATAAGGAGCACAATTTATGTGATATCCAAGACAAAGAATGGAAA  600

seq1  ACCCACAGTCATGATCAAGGACATTAAAGTTTGTAAACCTGTGAATCCAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGTCATGATCAAGGACATTAAAGTTTGTAAACCTGTGAATCCAC  650

seq1  TCAGACAGGAACAAAATGAATCTTGGTCAAGAAAATAACACCAGATGCCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGGAACAAAATGAATCTTGGTCAAGAAAATAACACCAGATGCCT  700

seq1  GAAGGAAATAAGGACAATATAAAATATTAAAATTATGTTCAATAGGTGCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATAAGGACAATATAAAATATTAAAATTATGTTCAATAGGTGCT  750

seq1  TAGAAATGCCACACAAAAAAAAATCCTGAAGAGAAAATGCAGTGAGGCAA  788
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGAAATGCCACACAAAAAAAAATCCTGAAGAGAAAATGCAGTGAGGC-A  799

seq1  ATAAAAATGATACATAGAGAACCTGTGGGAGACAGATTATCAGACTTAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGATACATAGAGAACCTGTGGGAGACAGATTATCAGACTTAAA  849

seq1  GAAAAAGTAGAGGAGGTGGATGCCTCAATCAAAGAAAATGGTGAATTAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTAGAGGAGGTGGATGCCTCAATCAAAGAAAATGGTGAATTAAA  899

seq1  ATGATGTTAGGTCAAGGG-ACAATATTA-TTTACTGCTTGAAGGATGAGG  936
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  ATGATGTTAGGTCAAGGGAACAATATTATTTTACTGCTTGAAGGATGAGG  949

seq1  CAATAAAGAGAAACTCCTTTGGAAAACTGTCCTGATCTTTGTCAAAAAAA  986
      ||||||||||||||||||||||||||||||||||||||||| | ||||||
seq2  CAATAAAGAGAAACTCCTTTGGAAAACTGTCCTGATCTTTG-CCAAAAAA  998

seq1  AAGTAAGGAAAGG  999
      |||| ||||||||
seq2  AAGT-AGGAAAGG  1010