BAC Information

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BAC

Clone NameB6Ng01-338L04
Chromosome4 (Build37)
Map Location 61,317,905 - 61,318,357
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127
Downstream geneLOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338L04.bB6Ng01-338L04.g
ACCGA122911GA122912
length1,003980
definitionB6Ng01-338L04.b B6Ng01-338L04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatcttaaagtcgtgtatattaaaataatactaaaagagagcat
gtggatccatacaccagactaattcgaggatggggtatgagtatacaggt
tatgagaatgccaaagttccaggagctgagtttctgtgaaactctctgcc
tagtgagtgctcccaggcctcttgttctgccaagcaaacttcactggatt
gtgcgtagcatgtagtcagtctattagtctatgtctttttattggggaat
tgagtccattgatgttaagagaaattgaaaagtaatttttgcttcctttt
atttttgttgttaaatttggggttctgtttttctggctgtcttaggtttg
ttgaaggattactttcttgcttttctagggtatagtttccatcttttgtt
ggtgtttttcctttattatcctttgaaggtctggattcatggaaagatat
tgtgtgaatttagttttatcatggaatactttggtttttccatctacggt
aattgagagttttgctgggtaccgtagcctgggctggcatttgtgttctc
ttaggttctgcataacatctgtccaggctcttctggctttcatagtctct
ggtgagaagtctggtgtaattctaataggcctgcctttatatgttacttg
actgcttccccttactgcttttaatattctatgtttattttgtgcatttg
ttgttctgattaaaatatttcgggaggaatttctttactggttctgtcta
tttggagttctgtaggcttcttgtatggttatgggcacctctttttttag
gtttgggaagttttcttttataattttgttgaagatatttgctggccttt
taagttgaaaatcttcattctcatctactcctattatctgtaggtttggt
cttctcattgtgtcttggatttcctggatgtttgagttaagacctttttc
attttccatttcttttgtttctgtgcccatatctctatgaaatcttctgt
acc
gaattccaaagaagtaggccctattggaaggaacatggggcccctaattc
aggagctagagaaagtaaccaaggggctaatggggtctgcaaccctgtag
gaggatcaaaaatattagctaactagtacctcccagatctatgtctctag
ttgcatatgtagcagaggatgacctagttggccatcaataagaagagagg
cccttggttttgtgaagatcagatgtcccagtacaggggaatgccgtgcc
agcatgcagaagtgggtagtttgaggagcagggcatgaagagggtatagg
tgacttttgggaaagcatttgaaatgtaaatgaagaaaatatctaataag
aaaaaaagtaggtcctaatgctcatgaaggaatagacttgctagcaagag
taaggggaagctctctagagggaacttccttcttccatgtcttttatata
ggctgccaaaacaaggtatgacccagttttaggtgtatctttgatcctca
aaaaatctggattaaaggtgtgtctttccatcttcaattgaattttattt
ctcaaagagattgatttattatctctcaaaggtgtactgacctgctaaag
ttttagttgattccagatgaggttaacaacaagaatagccattacaagcc
caccccttgtcatctagacacacattcatatatccctttttcatgcttat
cttccaaatggaagtaatagccaggtcataattttacctatatacctatc
ccatggacaatctcaaaagcattatatatttaacagagtcataattgtgc
acaacatgatataaatatccctcatacaaccataaatgcattataaattt
taatatgtccactcaagggacattctttgatgtctcaaaatttaaatatg
acaaccactgataatcttttaattgttctgatattatatgacatgaaaaa
aaaacatgaaaatctgtacaacacattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_61317905_61318357
seq2: B6Ng01-338L04.g_581_1034

seq1  AAGTGTGTCTTTCCATCTTCAATTGACTTTTATTTCTCAAAGAGATCGGT  50
      | |||||||||||||||||||||||| ||||||||||||||||||| | |
seq2  AGGTGTGTCTTTCCATCTTCAATTGAATTTTATTTCTCAAAGAGATTGAT  50

seq1  TTATTATCTCTCAAAGGTGTACTGACCTGCTATGGTTTTTGTCAATTCCA  100
      ||||||||||||||||||||||||||||||||  ||||| ||  ||||||
seq2  TTATTATCTCTCAAAGGTGTACTGACCTGCTAAAGTTTTAGTTGATTCCA  100

seq1  GATGTAGTTAACAACAAGAATAGTCATTACAAGCCCACCCCTTGTCACCT  150
      ||||  ||||||||||||||||| ||||||||||||||||||||||| ||
seq2  GATGAGGTTAACAACAAGAATAGCCATTACAAGCCCACCCCTTGTCATCT  150

seq1  TGACACGAAATCACATATCCCTTGTT-ATGCTTATCTTCCAAATAGAAGA  199
       |||||  | ||| ||||||||| || ||||||||||||||||| |||| 
seq2  AGACACACATTCATATATCCCTTTTTCATGCTTATCTTCCAAATGGAAGT  200

seq1  AATAGCCAGGTCATAATTATACCTGTATAACTATCCCATGGACAATCTCA  249
      |||||||||||||||||| ||||| |||| ||||||||||||||||||||
seq2  AATAGCCAGGTCATAATTTTACCTATATACCTATCCCATGGACAATCTCA  250

seq1  AAATCATTGTATATTTAGCAGAGTCATAATTGTGCACAACATGATATAAA  299
      ||| |||| |||||||| ||||||||||||||||||||||||||||||||
seq2  AAAGCATTATATATTTAACAGAGTCATAATTGTGCACAACATGATATAAA  300

seq1  TATCCCTCATACAACCATGAATGCATTATAAATTTTATAATGTCACCTCA  349
      |||||||||||||||||| ||||||||||||||||||  |||||  ||||
seq2  TATCCCTCATACAACCATAAATGCATTATAAATTTTAATATGTCCACTCA  350

seq1  AGGGACATTCTTTGATATCTCAAAATTTAAATATGACAACCACTGATATT  399
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  AGGGACATTCTTTGATGTCTCAAAATTTAAATATGACAACCACTGATAAT  400

seq1  CTTTTTATTGTTCTGATAATATATGACAAAGAAAGAAAACATAAAAATCT  449
      ||||| |||||||||||| |||||||||   ||| ||||||| |||||||
seq2  CTTTTAATTGTTCTGATATTATATGACATGAAAAAAAAACATGAAAATCT  450

seq1  GTAC  453
      ||||
seq2  GTAC  454