BAC Information

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BAC

Clone NameB6Ng01-338P13
Chromosome4 (Build37)2 (Build37)
Map Location 35,610,406 - 35,610,742175,487,824 - 175,488,216
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream geneLingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338P13.bB6Ng01-338P13.g
ACCGA123101GA123102
length469387
definitionB6Ng01-338P13.b B6Ng01-338P13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,610,406 - 35,610,742)(175,487,824 - 175,488,216)
sequence
gaattcaagtcccatacttaaaaataataaaagtaatacatagcaaacca
gtagccaacatcaaagtaaatggagaggaacttgaaccaatcccactaaa
atcagggactagacaaggctgcccactttctccctacctattcgatatgt
acttgaagtcctagccagagcaattcgacaacaaaaggagatcaacggga
cataaattggaaaggacgaagtcaaaataccactatttgcagatgatatg
atagtatatataaatgaccctaaaaatttcaccagggaactcctaaacct
gataaacagcttcagtagctggatataaaattaactcaaacaaatcaatg
acctttctctacactaaggataaataggctgagaaagaaattagggacac
aacacccttctcaatagtcacaaataataccttggtgtaactctaactaa
ggaactgaagatatgtatg

cagtcctgacttccttggagatgtagagtagtatgtaatcataagcccaa
taaaccttttccttcaaaacttgcttcttggtcatcatgtttgtgcagga
atagaaaccctgaataagacaatgggtataaggagtggattgtaaaaata
ggttagacaataaagaaataaagaatccaaggaactaaagggaactgcaa
ccctataggtgcaacaacaatatgaactaaccagtaccccggagctcttg
tctctagctgcatatgtatcaaaagatggcctaataggccatcacttgaa
agagaggcccattggacttgcaaactttatatgccacagtacaggggaat
gccagggccaaaaagggggagtgggtgggtaggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35610406_35610742
seq2: B6Ng01-338P13.b_143_473 (reverse)

seq1  ATTATTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTCAG  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTATTTGTGACTATTGAGAAGGGTGTTGTGTCCCTAATTTCTTTCTCAG  50

seq1  CCTGTTTATTCTTTGTGTAGAGAAAGGCCATTGACTTGTTTGAGTTAATT  100
      ||| ||||| ||| ||||||||||||| |||||| |||||||||||||||
seq2  CCTATTTATCCTTAGTGTAGAGAAAGGTCATTGATTTGTTTGAGTTAATT  100

seq1  TTATATCCAGCTACTTCACTGAAGCTGTTTATCAGGTTTAGGAGTTCTCT  150
      ||||||||||||     |||||||||||||||||||||||||||||| ||
seq2  TTATATCCAGCT-----ACTGAAGCTGTTTATCAGGTTTAGGAGTTCCCT  145

seq1  GGTAGAATTTTTAGGGTCACTTATATATACTATCATATCATCTGCAAAAA  200
      |||  |||||||||||||| |||||||||||||||||||||||||||| |
seq2  GGTGAAATTTTTAGGGTCATTTATATATACTATCATATCATCTGCAAATA  195

seq1  GTTATATTTTGACTTCATCTTTTCCAATTTGTATCCCCTTGATCCCCTTT  250
      ||  |||||||||||| || |||||||||| | |||| |||||| |||||
seq2  GTGGTATTTTGACTTCGTCCTTTCCAATTTATGTCCCGTTGATCTCCTTT  245

seq1  TGTTGTCAAATTGCTCTGGCTAGGACTTCAAGTACAATGTTGAATAGATA  300
      ||||||| ||||||||||||||||||||||||||| || | |||||| ||
seq2  TGTTGTCGAATTGCTCTGGCTAGGACTTCAAGTAC-ATATCGAATAGGTA  294

seq1  GGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTT  337
      |||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTT  331


seq1: chr2_175487824_175488216
seq2: B6Ng01-338P13.g_69_461 (reverse)

seq1  CTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCATTCCCCTGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCATTCCCCTGTACT  50

seq1  GTGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCAAGTGATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCAAGTGATGGC  100

seq1  CTATTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGG  150

seq1  GTACTGGTTAGTTCATATTGTTGTTGCACCTATAGGGTTGCAGTTCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTTAGTTCATATTGTTGTTGCACCTATAGGGTTGCAGTTCCCTT  200

seq1  TAGTTCCTTGGATTCTTTATTTCTTTATTGTCTAACCTATTTTTACAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTTGGATTCTTTATTTCTTTATTGTCTAACCTATTTTTACAATC  250

seq1  CACTCCTTATACCCATTGTCTTATTCAGGGTTTCTATTCCTGCACAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTATACCCATTGTCTTATTCAGGGTTTCTATTCCTGCACAAACA  300

seq1  TGATGACCAAGAAGCAAGTTTTGAAGGAAAAGGTTTATTGGGCTTATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACCAAGAAGCAAGTTTTGAAGGAAAAGGTTTATTGGGCTTATGAT  350

seq1  TACATACTACTCTACATCTCCAAGGAAGTCAGGACTGGAATTC  393
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACTACTCTACATCTCCAAGGAAGTCAGGACTGGAATTC  393


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