BAC Information

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BAC

Clone NameB6Ng01-338P14
Chromosome4 (Build37)
Map Location 110,674,947 - 110,676,151
singlet/doubletsinglet
Overlap genenone
Upstream geneElavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338P14.bB6Ng01-338P14.g
ACCGA123103GA123104
length1,2461,205
definitionB6Ng01-338P14.b B6Ng01-338P14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggctattaagtttaattaagggagtagtaactttggggcaag
agttcacccagctaaatttaggtctaggtagggtagtataagcctttaat
cccaggaggcaatgataagcagatctctgagttcaaggccagcctagaac
agagcaagttctgaagaaaaacttaaatccaggtttggtggaccacaact
ttaatccgagtgcttagacattcatgcagatctctgagttcaaagtcagt
ctatggagcaagatccaggacagaaaagcttaggcagtgaaggagttgga
aaaaaggaagctggtgatattataatagaacaaggggtccaacattccag
ctcctgcaagcaacagaactcagcagcttcactcatgtggctctagcttt
aaagtccagaatagaagggactactgggacaactgatgctggttatctgg
agctaagaaattagtggtgattaagaagagaccagcatcagtgaggtgaa
atatcctgggaagtgttttctgagagcacaaagaagttgtgttccagaaa
tagccaaggttgtacctcatgctgcagctgtgcttggtaatgttcgagaa
tcacccaggtgatactggttttgaaagcatgaaggcatcatgaagaacag
ttgaggtttagaggccatggaaggccatggtgaaaatgcagcctcagttg
tagttgacagtgcaggactgaaagcgtcatatgaaggagttgaggcttgg
caccataaagagagcctaagaaaggtgattggtgaaacctagttgcagag
gaagacctcagcgccagtaccatgggatgaccaccaagaacagcagtggg
agtgaagtggatcaacttgaacttaagagtgctacggagggcagaactgg
agaagtgacaccagccctttggaggggcacagaagatcatgtgtggatct
cagatactggagcaagaagctgtgaagctgaagttgacttggggacccaa
gatgtatagatgctggagccacaggatgcctgccaaggaaagctgctaac
aggaagtggaaccagctcaggagaagaactttgtgtgtcaacaaagaatg
aaaaggagtgaagatctggaagactgcctttgctaacagaacattgagaa
gagaattggagttgcccacttgtactgtctgtattgggctttacaggtta
gagtgatatgtgccctggtaatactctcagagaagagagaactcct

gaattcccactctatccattgctcaaggttaatcacaagtttgttttatc
ttcaccagtaggaaattaaatcagcaaaaacagtttctgtggttttatat
gaacttgtggggttgcctcatcttcctgccgaaattgcacactgtaataa
ttttgccctcatagttttttggcaacttacactttctgaaccgcagtgtc
ctcatatgtaatttgatagtaaatatatcaaatccacacgattgcaataa
tattagcactagaagattctcaaactttcttgaaggacaaaatatttgac
ctataacttgaagatggttagaatggcactatataaagatgatgataaaa
tcattctgtgaagaaatagtgttatgaatatagtgaataaatggaaagac
atgggtggaactgcgtggtcaaactaaaccatgaccacagcaggagcatt
gcaaaggacagtcaaacacatattgggatatattttttctgaagattaaa
aatatgtcatctgtatatgcaaacatgtgtatgttgaaataaatcttcat
acaagctcttaacaccatcagaaattttgagaaacagacccatgagaaat
ttcagtaagtaaaatttggcctttgccaacatttgtattagatgtgagta
aaattcagagggtttagtacaaaggagtagctcaaaaaactctctctctt
ttcttttttctttttttcttttttttttcatttttttttgttaagacata
acagtccttggggagctttattagaaaattctcgtgccagctgtctcttt
tcttcaactcacattcacacaatatgcctcgctcttgtttctcttcggca
atgcactcagatactaatgagttttggggaatagaaaacccaatggaata
ttaaaattggaaagaagcatcgttgagttaattttgccgaagtgcatcac
aacacacagtgctgctgtagaatgattattcaaataggaattcagtcatg
ggaaaattaattaaggaaatgttattgctaatatgctttttatacatatt
acattatgaggcacacagttcactactggattcccgcatagacatgagtc
aacattttattgaaagtcaaattctcaagaccttctttgtctgggttcat
gttcagatttcattattttaagtatagacaaatattcaccagtgttcact
atttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_110674947_110676151
seq2: B6Ng01-338P14.g_68_1272

seq1  GAATTCCCACTCTATCCATTGCTCAAGGTTAATCACAAGTTTGTTTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTCTATCCATTGCTCAAGGTTAATCACAAGTTTGTTTTATC  50

seq1  TTCACCAGTAGGAAATTAAATCAGCAAAAACAGTTTCTGTGGTTTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAGTAGGAAATTAAATCAGCAAAAACAGTTTCTGTGGTTTTATAT  100

seq1  GAACTTGTGGGGTTGCCTCATCTTCCTGCCGAAATTGCACACTGTAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTGGGGTTGCCTCATCTTCCTGCCGAAATTGCACACTGTAATAA  150

seq1  TTTTGCCCTCATAGTTTTTTGGCAACTTACACTTTCTGAACCGCAGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCCTCATAGTTTTTTGGCAACTTACACTTTCTGAACCGCAGTGTC  200

seq1  CTCATATGTAATTTGATAGTAAATATATCAAATCCACACGATTGCAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATGTAATTTGATAGTAAATATATCAAATCCACACGATTGCAATAA  250

seq1  TATTAGCACTAGAAGATTCTCAAACTTTCTTGAAGGACAAAATATTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCACTAGAAGATTCTCAAACTTTCTTGAAGGACAAAATATTTGAC  300

seq1  CTATAACTTGAAGATGGTTAGAATGGCACTATATAAAGATGATGATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTTGAAGATGGTTAGAATGGCACTATATAAAGATGATGATAAAA  350

seq1  TCATTCTGTGAAGAAATAGTGTTATGAATATAGTGAATAAATGGAAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGTGAAGAAATAGTGTTATGAATATAGTGAATAAATGGAAAGAC  400

seq1  ATGGGTGGAACTGCGTGGTCAAACTAAACCATGACCACAGCAGGAGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGGAACTGCGTGGTCAAACTAAACCATGACCACAGCAGGAGCATT  450

seq1  GCAAAGGACAGTCAAACACATATTGGGATATATTTTTTCTGAAGATTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGACAGTCAAACACATATTGGGATATATTTTTTCTGAAGATTAAA  500

seq1  AATATGTCATCTGTATATGCAAACATGTGTATGTTGAAATAAATCTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCATCTGTATATGCAAACATGTGTATGTTGAAATAAATCTTCAT  550

seq1  ACAAGCTCTTAACACCATCAGAAATTTTGAGAAACAGACCCATGAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTCTTAACACCATCAGAAATTTTGAGAAACAGACCCATGAGAAAT  600

seq1  TTCAGTAAGTAAAATTTGGCCTTTGCCAACATTTGTATTAGATGTGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAAGTAAAATTTGGCCTTTGCCAACATTTGTATTAGATGTGAGTA  650

seq1  AAATTCAGAGGGTTTAGTACAAAGGAGTAGCTCAAAAAACTCTCTCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGAGGGTTTAGTACAAAGGAGTAGCTCAAAAAACTCTCTCTCTT  700

seq1  TTCTTTTTTCTTTTTTTCTTTTTTTTTTCATTTTTTTTTGTTAAGACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTCTTTTTTTCTTTTTTTTTTCATTTTTTTTTGTTAAGACATA  750

seq1  ACAGTCCTTGGGGAGCTTTATTAGAAAATTCTCGTGCCAGCTGTCTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTTGGGGAGCTTTATTAGAAAATTCTCGTGCCAGCTGTCTCTTT  800

seq1  TCTTCAACTCACATTCACACAATATGCCTCGCTCTTGTTTCTCTTCGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAACTCACATTCACACAATATGCCTCGCTCTTGTTTCTCTTCGGCA  850

seq1  ATGCACTCAGATACTAATGAGTTTTGGGGAATAGAAAACCCAATGGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCAGATACTAATGAGTTTTGGGGAATAGAAAACCCAATGGAATA  900

seq1  TTAAAATTGGAAAGAAGCAATCGTTGAGTTAATTTTGCCGAAGTGCATCA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTAAAATTGGAAAGAAGC-ATCGTTGAGTTAATTTTGCCGAAGTGCATCA  949

seq1  CAACACACAGTGCTGCTGTAGGAATGAATATTCAAATAGGAATTCAGTCA  1000
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  CAACACACAGTGCTGCTGTA-GAATGATTATTCAAATAGGAATTCAGTCA  998

seq1  TGGGAAAATTAATTAAGGAAAATGTTATTGCTAATATTGCTTTTTATACA  1050
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  TGGGAAAATTAATTAAGG-AAATGTTATTGCTAATA-TGCTTTTTATACA  1046

seq1  TA-TACA-TATGAAGGCACACAGTCAACTACTGGA-TCCCGCATAGACAA  1097
      || |||| |||| |||||||||||  ||||||||| |||||||||||| |
seq2  TATTACATTATG-AGGCACACAGTTCACTACTGGATTCCCGCATAGAC-A  1094

seq1  TGAGTCAAACATTTA-TGAAAGTCAAATCCTCAAGACC-TCTT--GCTGG  1143
      ||||||||   |||| |||||||||||| ||||||||| ||||   ||||
seq2  TGAGTCAACATTTTATTGAAAGTCAAATTCTCAAGACCTTCTTTGTCTGG  1144

seq1  GTTCATGTTAAGATTTTTAATTATTTTTAAGTTATAGACAAATA-TCAAC  1192
      ||||||||| |||  ||| |||| ||||||| |||||||||||| ||| |
seq2  GTTCATGTTCAGA--TTTCATTA-TTTTAAG-TATAGACAAATATTCACC  1190

seq1  A-TG-TCACTATTTT  1205
      | || ||||||||||
seq2  AGTGTTCACTATTTT  1205


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