BAC Information

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BAC

Clone NameB6Ng01-339H20
Chromosome4 (Build37)18 (Build37)
Map Location 82,524,420 - 82,525,40911,689,847 - 11,690,500
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040164, EG545641, Nfib, Zdhhc21
Downstream geneCer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339H20.bB6Ng01-339H20.g
ACCGA123474GA123475
length992996
definitionB6Ng01-339H20.b B6Ng01-339H20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,524,420 - 82,525,409)(11,689,847 - 11,690,500)
sequence
gaattcttgaatagataaaagacaaccgttggccttactttggtggaggc
ctataactcccaacaccagaagcttgctgtgatggcaaacacctgtagcc
atggcacttgggaggcggagagaggaggaccaccaggccaccctcaatct
tacagcgagttctgggccaggtggggctagatgaaatcctttattaaaaa
tactgatattaataatgttactattctcaaacatcactggaatcaggatt
accctgtgacttgttcaacttaaccacggaataagggacatttgtgttac
ttctagagcatgcctcctgaataagtaagtccactatcttgtcctttctt
tgtctcaggccagatgcttattccagaaagtgtttgctcctgtcaaatgt
gtgagtcctggaataatgtgaagcaaaggcaaagccaacccctgacaagt
gtgttgtgtcaaaaacaaagtatacccttgtcagcaaatgcccaaaataa
gtgcacactgggaagataaaatattaaagctcactcatcttctctctgtt
gggaatactgaatgtcatctgtctagaatatacagaaacatttagggaaa
aactaatctctaaaatgcactggacaaacaaggcagggcactgtgcagag
aagacaccaccatatgaccaccgaaggagaccatcgtacagccattgaca
gggcaccactttaaagttgcagcttccagagagaaaccctagagaaagtc
ttctgtctctagtatactgctctgcctaaggcttagagtcagctccgtga
cccttgtcagttgtttgattttcgagtttcttgcccacactaccataaga
atgcgttggcattctgtttacgtgccctccatccaggacacagcatatga
gtaaatggggggcctctgctgattaatgcattcgcacaagtatgagtact
atgcgtgctacttcgcagtgtgtgtacgatgatgtagaatac
gaattccacatgaccaggtaaacctgctcctgaagagcgagacctgggag
gaaccagcagggttagccagtgagtggggcagtggggacttgggcagttg
gaaagaggcttcacagactagggagactcaggagctgatgtggggagttt
aaggaaggtcagaagtcatgcttggtcagctggtcggtggccaagagatg
ggggtacaagaagagccaagagaggagggaagggaaagccaatctcacac
cccaaagggaatccagaaagcacacaatctcgctccatccctctgataaa
gacctgagcccttctcattgctggggtggggggggatgtggtttgaaaac
aaattttttttttgagacagggtttctctgtatagccctggttgacctgg
aatcactattgtaggccaggctgtccttgaacctggagatcctctgcctc
tgtctcccaagagctggggttaaagtcatgtgccaccaccgccacccaga
tgaaaatcaattttactttaaggtaaatcttaattttttgctggcagagg
aaataactaatccttctttctcccaacacacatcatgaccctcaaaccct
gctgggagaatttggtagtaactcacagtattggaacacaagagccttgg
ggctctgtggagaggggccttgccagcagcgatgcagctggctgacagag
aggcctttcctgagtgccaatcaactggcttttttggatccatcaagctg
gacacttagaataatgctcttgacttggagagtctagaagagtgtggata
tgcatggggaaagtgcctgattattttgtttcacttcttcaaaccaattt
ttccataaagcagagagaatcctgtattatcaccatctgatgggtgagga
cttcatctaaatcagacaggcacgccctgaggaggtctacacttttattt
cttcagtaatttactgcttcctctgcctgaaaaaattcttagtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_82524420_82525409
seq2: B6Ng01-339H20.b_44_1035

seq1  GAATTCAATGAATAGATAAAAGACAACCATTGGCCTTACTTTGGTGGAGG  50
      ||||||  |||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTC-TTGAATAGATAAAAGACAACCGTTGGCCTTACTTTGGTGGAGG  49

seq1  CCTATAACTCCAAACACCAGAAGCTTGCTGTGATGGCAAACACCTGTAGC  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTATAACTCCCAACACCAGAAGCTTGCTGTGATGGCAAACACCTGTAGC  99

seq1  CATGGCACTTGGGAGGTGGAGAGAGGAGGACCAGTAGGCCACCCTCAGTC  150
      |||||||||||||||| ||||||||||||||||  |||||||||||| ||
seq2  CATGGCACTTGGGAGGCGGAGAGAGGAGGACCACCAGGCCACCCTCAATC  149

seq1  ATACAGTGAGTTCTGGGCCAGCTGGGGCTAGATGAAATCCTTTATTAAAA  200
       ||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TTACAGCGAGTTCTGGGCCAGGTGGGGCTAGATGAAATCCTTTATTAAAA  199

seq1  ATACTGATATTAATAATGTTACTATTCTCAAACATCACTGGAATCAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATATTAATAATGTTACTATTCTCAAACATCACTGGAATCAGGAT  249

seq1  TACCATGTGACTTGTTCAACTTAACCACGGAATAAGGGACATTTGTGTTA  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGTGACTTGTTCAACTTAACCACGGAATAAGGGACATTTGTGTTA  299

seq1  CTTCTAGAGCAGTCCTCAAGAATAAGTAAGTCCACTATCTTGTCCTTTCT  350
      |||||||||||  ||||  |||||||||||||||||||||||||||||||
seq2  CTTCTAGAGCATGCCTCCTGAATAAGTAAGTCCACTATCTTGTCCTTTCT  349

seq1  TTGTCTCAGGCAAGATGCTTATTCCAGAAAGTGTTTGCTCCTGTCAAATG  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAGGCCAGATGCTTATTCCAGAAAGTGTTTGCTCCTGTCAAATG  399

seq1  TGTGAGTCCTGGAAGAATGTGAAGCAGAGGCAAAGCCAACCAGTGACAAA  450
      |||||||||||||| ||||||||||| ||||||||||||||  |||||| 
seq2  TGTGAGTCCTGGAATAATGTGAAGCAAAGGCAAAGCCAACCCCTGACAAG  449

seq1  TGTGTTGTGTAAAAAACAAAATAGACCCATGTCAACAAATGCCCAAAATA  500
      |||||||||| ||||||||| || |||| ||||| |||||||||||||||
seq2  TGTGTTGTGTCAAAAACAAAGTATACCCTTGTCAGCAAATGCCCAAAATA  499

seq1  AGTGCACACTGGGAAGATAAAATATTAAAGCTCACTCAGCTTCTCTCTGT  550
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTGCACACTGGGAAGATAAAATATTAAAGCTCACTCATCTTCTCTCTGT  549

seq1  TGGGAATACTGAATGTCAGCTGTCTAGAATATACAGAAACATTTAGGGAA  600
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGGGAATACTGAATGTCATCTGTCTAGAATATACAGAAACATTTAGGGAA  599

seq1  AAACTAATCTCTAAAATGCACTGGAGAAACAAGGCAGGGCACTGTGCAGA  650
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAACTAATCTCTAAAATGCACTGGACAAACAAGGCAGGGCACTGTGCAGA  649

seq1  GAAGACACCACCATA-GACCACCGAAGGAGACCATCGTACAGCCATTGAC  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAGACACCACCATATGACCACCGAAGGAGACCATCGTACAGCCATTGAC  699

seq1  AGGGCACCACTTTAAAGTCCCAGCTTCCAGAGAGCAGTCAGTG-GAAAGC  748
      ||||||||||||||||||  |||||||||||||| |  |   | ||||| 
seq2  AGGGCACCACTTTAAAGTTGCAGCTTCCAGAGAGAAACCCTAGAGAAAGT  749

seq1  CATCTGCCTCTAGTATACTGCTCTGCCTAAGGCTTAGAGCCAGCTCCTTC  798
      | |||| |||||||||||||||||||||||||||||||| ||||||| | 
seq2  CTTCTGTCTCTAGTATACTGCTCTGCCTAAGGCTTAGAGTCAGCTCCGTG  799

seq1  TCCCTTCTCAGTTGTTTGATTTTCGAGTTCCTTGCCCAACCTACCATAAG  848
       ||||| |||||||||||||||||||||| ||||||||  ||||||||||
seq2  ACCCTTGTCAGTTGTTTGATTTTCGAGTTTCTTGCCCACACTACCATAAG  849

seq1  AAGGAGCTGGGATTCTGTTTAACTTGCACTCAAGCTAGTACACAGCATAT  898
      || | | ||| ||||||||| || ||| ||| | | || |||||||||||
seq2  AATGCGTTGGCATTCTGTTT-ACGTGCCCTCCATCCAGGACACAGCATAT  898

seq1  GTGTAACTGGGGCGCCTCTGCTGA-TAAAGCATACGCACAAG-AACAGTA  946
      | |||| ||||| ||||||||||| ||| |||| |||||||| |  ||||
seq2  GAGTAAATGGGGGGCCTCTGCTGATTAATGCATTCGCACAAGTATGAGTA  948

seq1  CTATGTGTGCTACTGAGCAGTGTGTGTACGAGGCTGAAGAATAC  990
      ||||| ||||||||  ||||||||||||||| | || |||||||
seq2  CTATGCGTGCTACTTCGCAGTGTGTGTACGATGATGTAGAATAC  992

seq1: chr18_11689847_11690500
seq2: B6Ng01-339H20.g_397_1058 (reverse)

seq1  TTTACTA--GATTTTTTCAGGCAGAGGAAGCAGTAAATTACTGAAGAA--  46
      |||||||   ||||||||||||||||||||||||||||||||||||||  
seq2  TTTACTAAGAATTTTTTCAGGCAGAGGAAGCAGTAAATTACTGAAGAAAT  50

seq1  AAAAGTGTAGACCTCACCAGGGCGTGCCTGTCTGGATTTAGATGAAGT-C  95
      |||||||||||||||  |||||||||||||||| |||||||||||||| |
seq2  AAAAGTGTAGACCTCCTCAGGGCGTGCCTGTCT-GATTTAGATGAAGTCC  99

seq1  TCACCCATCAGAT-GTGATAATACA-GATTCTCTCTGCTTTATGG-AAAA  142
      ||||||||||||| ||||||||||| ||||||||||||||||||| ||||
seq2  TCACCCATCAGATGGTGATAATACAGGATTCTCTCTGCTTTATGGAAAAA  149

seq1  TTGGTTTGAAGAAGTGGAAACAAAATAATCAGGCACTTT-CCCATGCATA  191
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  TTGGTTTGAAGAAGT-GAAACAAAATAATCAGGCACTTTCCCCATGCATA  198

seq1  TCCACACTCTTCTAGACTCTCCAAGTCAAGAGCATTATTCTAAGTGTCCA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTCTTCTAGACTCTCCAAGTCAAGAGCATTATTCTAAGTGTCCA  248

seq1  GCTTGATGGATCC-AAAAAGCCAGTTGATTGGCACTCAGG-AAGGCCTCT  289
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  GCTTGATGGATCCAAAAAAGCCAGTTGATTGGCACTCAGGAAAGGCCTCT  298

seq1  CTGTCAGCCAGCCTGCATCGCTGCTGGCAAGGCCCCTCTCCACAGAGCCC  339
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCCAG-CTGCATCGCTGCTGGCAAGGCCCCTCTCCACAGAGCCC  347

seq1  CAAGGCTCTTGTGTTCCAATACTGTGAGTTACTACCAAATTCTCCCAGCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCTTGTGTTCCAATACTGTGAGTTACTACCAAATTCTCCCAGCA  397

seq1  GGGTTTGAGGGTCATGATGTGTGTTGGGAGAAAGAAGGATTAGTTATTTC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGAGGGTCATGATGTGTGTTGGGAGAAAGAAGGATTAGTTATTTC  447

seq1  CTCTGCCAGCAAAAAATTAAGATTTACCTTAAAGTAAAATTGATTTTCAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCAGCAAAAAATTAAGATTTACCTTAAAGTAAAATTGATTTTCAT  497

seq1  CTGGGTGGCGGTGGTGGCACATGACTTTAACCCCAGCTCTTGGGAGACAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGCGGTGGTGGCACATGACTTTAACCCCAGCTCTTGGGAGACAG  547

seq1  AGGCAGAGGATCTCCAGGTTCAAGGACAGCCTGGCCTACAATAGTGATTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGATCTCCAGGTTCAAGGACAGCCTGGCCTACAATAGTGATTC  597

seq1  CAGGTCAACCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAAAATTTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAACCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAAAATTTG  647

seq1  TTTTCAAACCACATC  654
      |||||||||||||||
seq2  TTTTCAAACCACATC  662