BAC Information

Click to search

BAC

Clone NameB6Ng01-339H22
Chromosome4 (Build37)
Map Location 154,175,819 - 154,288,604
singlet/doubletdoublet
Overlap geneB230396O12Rik, Mmel1, 2810405K02Rik
Upstream geneBC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2
Downstream geneTnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339H22.bB6Ng01-339H22.g
ACCGA123478GA123479
length1,08661
definitionB6Ng01-339H22.b B6Ng01-339H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,287,514 - 154,288,604)(154,175,819 - 154,175,879)
sequence
gaattctgaggtaattccagtcccctggggtctactatttcaatagtctg
agagtcaatgagaggaacaaatgagtctttagaatgtcgtcttctctgtc
acaccacctagaggtgtcctctgaggcccttataccccagaccaatggtc
cctagagccccagagctaagattggaccctatagtccagaatctgtaaaa
tcacctacatcaaccaacccacaccatgtcttcagcttgtgaccccagag
ttcatgacggtcaaccacgattggtccctgtacctcagaatctggaaaac
tatcatctgtacaaacctagcctatgcctgctcattgaccttgtctggcc
tttcccatggaaactacatgaaggctctcacctgcagggaccttggtcct
tctgcttactgataatttctggggcttccccgggtggccttggtggcatg
gaggaagggttataacaagcctgcatctaggtggtggtggtttcccctga
tctgcagcctttgcagcctgcaccatggtaatacctgcactgtgagacag
gtcacagggcaagactatgctgtcttagccacagtggatggctagagaga
tagaacaaccttagggccatagggctgggtcttcagcctagcttctcttc
ttcatgtattgtgtgagctttgtgtagaaaacatgagccctagatagggc
actgaagacaaaccaaaaagaagatactacctaggtctagcttaggtaac
tggatggaagtcgctcctctcagctgccaggatccctaaccctggatctc
agggctgtgtgtgaagcacttggggccgggctgaagcctccccataacag
gtttccgctccaggcagcccctgtgggtcccacctgctgtggggcctctg
aagagacctgtcttggaatgttttgggagtggtgtgtggctcacagaagc
tggtaggaatggggcaagaacccgcgcctgtgccagaggtcatcaggagc
cagaaggaaggaagcggggagccctcactgaggcttgagcaagactcacc
agagtgtgttgagatctgccagatgccatgactgag
atgattttggaaaggtgaacggttgagtgaatgggagggcagtgaggggg
gtaggtagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154287514_154288604
seq2: B6Ng01-339H22.b_51_1136 (reverse)

seq1  CTCAGTCATGGCATTCTGCAGA-CTCCACACACTCTGGTGAGTCCTGCCC  49
      ||||||||||||||   ||||| ||| ||||||||||||||||| ||| |
seq2  CTCAGTCATGGCATCTGGCAGATCTCAACACACTCTGGTGAGTCTTGCTC  50

seq1  AGGCCTCAGGTGA-GGCTCCCCGCTTTCCTTCCCTCTTGCCTCCCTGTTG  98
      | |||||| |||| |||||||||| |||||||| ||| ||   |||| ||
seq2  AAGCCTCA-GTGAGGGCTCCCCGC-TTCCTTCCTTCTGGC--TCCTGATG  96

seq1  ACCTCTGGCACCAGGCGCCGGTTCCTTGCCCCATTCCTACCAGCTTCTGT  148
      |||||||||| ||||||| |||| ||||||||||||||||||||||||||
seq2  ACCTCTGGCA-CAGGCGCGGGTT-CTTGCCCCATTCCTACCAGCTTCTGT  144

seq1  GGGCCACACCACACTCCCAAAACATTTCCAAGACAGGTCTCTTCAGAGGC  198
      | |||||||  ||||||||||||| |||||||||||||||||||||||||
seq2  GAGCCACACACCACTCCCAAAACA-TTCCAAGACAGGTCTCTTCAGAGGC  193

seq1  CCCACAGCAGGTGGGACCCACAGGGGCTGCCTGGAGCGGAAACCTGTTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCAGGTGGGACCCACAGGGGCTGCCTGGAGCGGAAACCTGTTAT  243

seq1  GGGGAGGCTTCAGCCCGGCCCCAAGTGCTTCACACACAGCCCTGAGATCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGCTTCAGCCCGGCCCCAAGTGCTTCACACACAGCCCTGAGATCC  293

seq1  AGGGTTAGGGATCCTGGCAGCTGAGAGGAGCGACTTCCATCCAGTTACCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAGGGATCCTGGCAGCTGAGAGGAGCGACTTCCATCCAGTTACCT  343

seq1  AAGCTAGACCTAGGTAGTATCTTCTTTTTGGTTTGTCTTCAGTGCCCTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGACCTAGGTAGTATCTTCTTTTTGGTTTGTCTTCAGTGCCCTAT  393

seq1  CTAGGGCTCATGTTTTCTACACAAAGCTCACACAATACATGAAGAAGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCTCATGTTTTCTACACAAAGCTCACACAATACATGAAGAAGAGA  443

seq1  AGCTAGGCTGAAGACCCAGCCCTATGGCCCTAAGGTTGTTCTATCTCTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGCTGAAGACCCAGCCCTATGGCCCTAAGGTTGTTCTATCTCTCT  493

seq1  AGCCATCCACTGTGGCTAAGACAGCATAGTCTTGCCCTGTGACCTGTCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCCACTGTGGCTAAGACAGCATAGTCTTGCCCTGTGACCTGTCTC  543

seq1  ACAGTGCAGGTATTACCATGGTGCAGGCTGCAAAGGCTGCAGATCAGGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCAGGTATTACCATGGTGCAGGCTGCAAAGGCTGCAGATCAGGGG  593

seq1  AAACCACCACCACCTAGATGCAGGCTTGTTATAACCCTTCCTCCATGCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACCACCACCTAGATGCAGGCTTGTTATAACCCTTCCTCCATGCCA  643

seq1  CCAAGGCCACCCGGGGAAGCCCCAGAAATTATCAGTAAGCAGAAGGACCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCACCCGGGGAAGCCCCAGAAATTATCAGTAAGCAGAAGGACCA  693

seq1  AGGTCCCTGCAGGTGAGAGCCTTCATGTAGTTTCCATGGGAAAGGCCAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTGCAGGTGAGAGCCTTCATGTAGTTTCCATGGGAAAGGCCAGA  743

seq1  CAAGGTCAATGAGCAGGCATAGGCTAGGTTTGTACAGATGATAGTTTTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCAATGAGCAGGCATAGGCTAGGTTTGTACAGATGATAGTTTTCC  793

seq1  AGATTCTGAGGTACAGGGACCAATCGTGGTTGACCGTCATGAACTCTGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGAGGTACAGGGACCAATCGTGGTTGACCGTCATGAACTCTGGG  843

seq1  GTCACAAGCTGAAGACATGGTGTGGGTTGGTTGATGTAGGTGATTTTACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGCTGAAGACATGGTGTGGGTTGGTTGATGTAGGTGATTTTACA  893

seq1  GATTCTGGACTATAGGGTCCAATCTTAGCTCTGGGGCTCTAGGGACCATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGGACTATAGGGTCCAATCTTAGCTCTGGGGCTCTAGGGACCATT  943

seq1  GGTCTGGGGTATAAGGGCCTCAGAGGACACCTCTAGGTGGTGTGACAGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGGGTATAAGGGCCTCAGAGGACACCTCTAGGTGGTGTGACAGAG  993

seq1  AAGACGACATTCTAAAGACTCATTTGTTCCTCTCATTGACTCTCAGACTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGACATTCTAAAGACTCATTTGTTCCTCTCATTGACTCTCAGACTA  1043

seq1  TTGAAATAGTAGACCCCAGGGGACTGGAATTACCTCAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAGTAGACCCCAGGGGACTGGAATTACCTCAGAATTC  1086

seq1: chr4_154175819_154175879
seq2: B6Ng01-339H22.g_73_133

seq1  ATGATTTTGGAAAGGTGAACGGTTGAGTGAATGGGAGGGCAGTGAGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTGGAAAGGTGAACGGTTGAGTGAATGGGAGGGCAGTGAGGGGG  50

seq1  GTAGGTAGATG  61
      |||||||||||
seq2  GTAGGTAGATG  61