BAC Information

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BAC

Clone NameB6Ng01-339H23
Chromosome4 (Build37)
Map Location 154,175,819 - 154,288,604
singlet/doubletdoublet
Overlap geneB230396O12Rik, Mmel1, 2810405K02Rik
Upstream geneBC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2
Downstream geneTnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339H23.bB6Ng01-339H23.g
ACCGA123480GA123481
length1,06061
definitionB6Ng01-339H23.b B6Ng01-339H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,287,550 - 154,288,604)(154,175,819 - 154,175,879)
sequence
gaattctgaggtaattccagtcccctggggtctactatttcaatagtctg
agagtcaatgagaggaacaaatgagtctttagaatgtcgtcttctctgtc
acaccacctagaggtgtcctctgaggcccttataccccagaccaatggtc
cctagagccccagagctaagattggaccctatagtccagaatctgtaaaa
tcacctacatcaaccaacccacaccatgtcttcagcttgtgaccccagag
ttcatgacggtcaaccacgattggtccctgtacctcagaatctggaaaac
tatcatctgtacaaacctagcctatgcctgctcattgaccttgtctggcc
tttcccatggaaactacatgaaggctctcacctgcagggaccttggtcct
tctgcttactgataatttctggggcttccccgggtggccttggtggcatg
gaggaagggttataacaagcctgcatctaggtggtggtggtttcccctga
tctgcagcctttgcagcctgcaccatggtaatacctgcactgtgagacag
gtcacagggcaagactatgctgtcttagccacagtggatggctagagaga
tagaacaaccttagggccatagggctgggtcttcagcctagcttctcttc
ttcatgtattgtgtgagctttgtgtagaaaacatgagccctagatagggc
actgaagacaaaccaaaaagaagatactacctaggtctagcttaggtaac
tggatggaagtcgctcctctcagctgccaggatccctaaccctggatctc
agggctgtgtgtgaagcacttggggccgggctgaagcctccccataacag
gtttccgctccaggcagcccctgtgggtcccacctgctgtgggggcctct
gaagagacctgtcttggaatgttttgggagtgtggtgtggcccacagaag
ctggtaggaattgggtcaaggaatctgcgcctgtgcctaaggtctatcat
ggagcaagagggaaggaaagccgggagtccttcaccttgaagtcctgggc
caggactcac
atgattttggaaaggtgaacggttgagtgaatgggagggcagtgaggggg
gtaggtagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154287550_154288604
seq2: B6Ng01-339H23.b_49_1108 (reverse)

seq1  GTGAGTCCT-GCCCAGGCCT--CAGGTGA--GGCTCCCCGCTTTCCTTCC  45
      ||||||||| ||||||| ||   ||||||  | ||||| |||||||||||
seq2  GTGAGTCCTGGCCCAGGACTTCAAGGTGAAGGACTCCCGGCTTTCCTTCC  50

seq1  CTCTTGCCTCCCTG-TTGACCTCTGGCACCAGGCGCCGGTTCCTTG-CCC  93
      |||||| |||| || | |||||  |||| ||||||| | ||||||| |||
seq2  CTCTTG-CTCCATGATAGACCTTAGGCA-CAGGCGCAGATTCCTTGACCC  98

seq1  CATTCCTACCAGCTTCTGTGGGCCACACCACACTCCCAAAACATTTCCAA  143
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATTCCTACCAGCTTCTGTGGGCCACACCACACTCCCAAAACA-TTCCAA  147

seq1  GACAGGTCTCTTCAGAGG-CCCCACAGCAGGTGGGACCCACAGGGGCTGC  192
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GACAGGTCTCTTCAGAGGCCCCCACAGCAGGTGGGACCCACAGGGGCTGC  197

seq1  CTGGAGCGGAAACCTGTTATGGGGAGGCTTCAGCCCGGCCCCAAGTGCTT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCGGAAACCTGTTATGGGGAGGCTTCAGCCCGGCCCCAAGTGCTT  247

seq1  CACACACAGCCCTGAGATCCAGGGTTAGGGATCCTGGCAGCTGAGAGGAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGCCCTGAGATCCAGGGTTAGGGATCCTGGCAGCTGAGAGGAG  297

seq1  CGACTTCCATCCAGTTACCTAAGCTAGACCTAGGTAGTATCTTCTTTTTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTCCATCCAGTTACCTAAGCTAGACCTAGGTAGTATCTTCTTTTTG  347

seq1  GTTTGTCTTCAGTGCCCTATCTAGGGCTCATGTTTTCTACACAAAGCTCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTCAGTGCCCTATCTAGGGCTCATGTTTTCTACACAAAGCTCA  397

seq1  CACAATACATGAAGAAGAGAAGCTAGGCTGAAGACCCAGCCCTATGGCCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACATGAAGAAGAGAAGCTAGGCTGAAGACCCAGCCCTATGGCCC  447

seq1  TAAGGTTGTTCTATCTCTCTAGCCATCCACTGTGGCTAAGACAGCATAGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTGTTCTATCTCTCTAGCCATCCACTGTGGCTAAGACAGCATAGT  497

seq1  CTTGCCCTGTGACCTGTCTCACAGTGCAGGTATTACCATGGTGCAGGCTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTGTGACCTGTCTCACAGTGCAGGTATTACCATGGTGCAGGCTG  547

seq1  CAAAGGCTGCAGATCAGGGGAAACCACCACCACCTAGATGCAGGCTTGTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGCAGATCAGGGGAAACCACCACCACCTAGATGCAGGCTTGTT  597

seq1  ATAACCCTTCCTCCATGCCACCAAGGCCACCCGGGGAAGCCCCAGAAATT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCTTCCTCCATGCCACCAAGGCCACCCGGGGAAGCCCCAGAAATT  647

seq1  ATCAGTAAGCAGAAGGACCAAGGTCCCTGCAGGTGAGAGCCTTCATGTAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAAGCAGAAGGACCAAGGTCCCTGCAGGTGAGAGCCTTCATGTAG  697

seq1  TTTCCATGGGAAAGGCCAGACAAGGTCAATGAGCAGGCATAGGCTAGGTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGGGAAAGGCCAGACAAGGTCAATGAGCAGGCATAGGCTAGGTT  747

seq1  TGTACAGATGATAGTTTTCCAGATTCTGAGGTACAGGGACCAATCGTGGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGATGATAGTTTTCCAGATTCTGAGGTACAGGGACCAATCGTGGT  797

seq1  TGACCGTCATGAACTCTGGGGTCACAAGCTGAAGACATGGTGTGGGTTGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGTCATGAACTCTGGGGTCACAAGCTGAAGACATGGTGTGGGTTGG  847

seq1  TTGATGTAGGTGATTTTACAGATTCTGGACTATAGGGTCCAATCTTAGCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTAGGTGATTTTACAGATTCTGGACTATAGGGTCCAATCTTAGCT  897

seq1  CTGGGGCTCTAGGGACCATTGGTCTGGGGTATAAGGGCCTCAGAGGACAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTCTAGGGACCATTGGTCTGGGGTATAAGGGCCTCAGAGGACAC  947

seq1  CTCTAGGTGGTGTGACAGAGAAGACGACATTCTAAAGACTCATTTGTTCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGTGGTGTGACAGAGAAGACGACATTCTAAAGACTCATTTGTTCC  997

seq1  TCTCATTGACTCTCAGACTATTGAAATAGTAGACCCCAGGGGACTGGAAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGACTCTCAGACTATTGAAATAGTAGACCCCAGGGGACTGGAAT  1047

seq1  TACCTCAGAATTC  1055
      |||||||||||||
seq2  TACCTCAGAATTC  1060

seq1: chr4_154175819_154175879
seq2: B6Ng01-339H23.g_74_134

seq1  ATGATTTTGGAAAGGTGAACGGTTGAGTGAATGGGAGGGCAGTGAGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTGGAAAGGTGAACGGTTGAGTGAATGGGAGGGCAGTGAGGGGG  50

seq1  GTAGGTAGATG  61
      |||||||||||
seq2  GTAGGTAGATG  61