BAC Information

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BAC

Clone NameB6Ng01-339M02
Chromosome4 (Build37)
Map Location 78,604,713 - 78,691,113
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339M02.bB6Ng01-339M02.g
ACCGA123660GA123661
length1,1771,101
definitionB6Ng01-339M02.b B6Ng01-339M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,604,713 - 78,605,889)(78,690,001 - 78,691,113)
sequence
gaattctctagatgaaagtgcaacggtgtctatacacctaaatccaattt
tataaagaatatattatttagcctacttttgtttagaactgacatttttt
aacttttcaatgattcttgaaacattgttaaccccaagtctcaaataatt
ttgtacaaaatagcagtattgacattcaataaagtaggtatgttactttt
aactataattaatataatatttaaaatttatataggctgtacctgtaact
ttttaacaataaagttatagatccaggatacggaaactaagtagcttgaa
atattttcctcagttttgcaccatggattttccattacatcttccccagg
agaggaccattcattttctgctgagttgttgcttactgtgggaatctaca
ccattttggagtattgtcaagagctgggtgattctagttcatatgcttgc
tgtatgactgccaagttcttatcccagcactttctctccattgtctaaca
attctttaattctattttttctttgacattgtatgccttcaaataagtta
gtcatgtagtcattaatttaaactgaagaataatgtgttttgcaggcaga
attaataatatatgtctatcacagacaggaacctacatcttgtaagatgt
aaatatgtgtaaaaatgttttaagtaaacatacagattgccttatataag
taagtggtgtacaaattatctcttgtaactgtttcaatcaacataatgac
atttcattatggagcccagtaagaagactagctgagtacactgctctata
tgtattctccattgtccttagtttacagaagccctgggcagaaatggtcc
aatccacagttaagatttatcctgtcacatccatttttgtgatatgttaa
ttattcagtaccaaaatcagagaacttttattcaagataattctcaattt
ggttacgttgacaatataaatcaccagaaacatctacttcacattattta
atttcaatcttactgtgtaattattcatttagaatattactattactacg
tctctggtagtgatccctccttactcttctctcccatcctctttgtactt
tcattctgtcgtttaatttctttccttaaagccgattatatttagttagg
tttctaccattggtgcattctaacttc

gaattccagaagctcatggcaaatgatttatatcacttaggtttaaggtt
agaaatgcacaagattcaattttggtaaacacaatcaaattagaatatta
gtataaaattaaatgatcaccttgctttatcattagtcctaaattacaaa
acattacagatagaaaagtattttgatatcacccaatttacttctcagta
ttcagaagcagaaaccaaaggccaaatgattatgacaaagtttgcaggta
tgtctgagagaatccaaagctgatttgtactttagtgttgcattcggtaa
cactgaaagattaattttgaggtccgaaattagtgtatgtgtttaaacat
aaaagcattactgattacagagaaagacaaaatctagcttcaaagaagtt
tgttaatagagtgatgtaagttagatttgcaataaaaccctgtctgttcc
tggaaccagaggcttcattcaagatttaatgaccatgttgtctgatagac
attctgcttgatcttctgaaagggagaaaatgaggaaacacaattaaaaa
tggttcaataaccatggatttggtgaattttcttctttgcatcaacagat
atgcttctcagggtaaggcttcctcaagaagtggatttcaaagcccatta
tccaattttggcttagttcagaaacaccaccatatatttcttcaccatga
tgaaagtaaatatccttctcacatataagtcatacatttttgtgatacaa
tttactgggaaaaaaaaacatggcaagcatcatggtcacaaacttcagtg
aaaacatccagcttttcttactttatgcgcagaatcttcattttgatgta
ccatttgtggatctttaaagaaattttgtcttgacattcaggtcaaggaa
gaatccttttggcgcatgctggttttcagaatagtatagttcatataaaa
tgtatttgaacttccctgtctatatctgttataattatttcagagctact
tcagttgcataggtactcatatttacacatttttagttatgtagatgtga
aagacacatgcatcatacaatcccagataggaatgccagagagaatgcag
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_78604713_78605889
seq2: B6Ng01-339M02.b_43_1219

seq1  GAATTCTCTAGATGAAAGTGCAACGGTGTCTATACACCTAAATCCAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGATGAAAGTGCAACGGTGTCTATACACCTAAATCCAATTT  50

seq1  TATAAAGAATATATTATTTAGCCTACTTTTGTTTAGAACTGACATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAATATATTATTTAGCCTACTTTTGTTTAGAACTGACATTTTTT  100

seq1  AACTTTTCAATGATTCTTGAAACATTGTTAACCCCAAGTCTCAAATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCAATGATTCTTGAAACATTGTTAACCCCAAGTCTCAAATAATT  150

seq1  TTGTACAAAATAGCAGTATTGACATTCAATAAAGTAGGTATGTTACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAAATAGCAGTATTGACATTCAATAAAGTAGGTATGTTACTTTT  200

seq1  AACTATAATTAATATAATATTTAAAATTTATATAGGCTGTACCTGTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAATTAATATAATATTTAAAATTTATATAGGCTGTACCTGTAACT  250

seq1  TTTTAACAATAAAGTTATAGATCCAGGATACGGAAACTAAGTAGCTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAATAAAGTTATAGATCCAGGATACGGAAACTAAGTAGCTTGAA  300

seq1  ATATTTTCCTCAGTTTTGCACCATGGATTTTCCATTACATCTTCCCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCCTCAGTTTTGCACCATGGATTTTCCATTACATCTTCCCCAGG  350

seq1  AGAGGACCATTCATTTTCTGCTGAGTTGTTGCTTACTGTGGGAATCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCATTCATTTTCTGCTGAGTTGTTGCTTACTGTGGGAATCTACA  400

seq1  CCATTTTGGAGTATTGTCAAGAGCTGGGTGATTCTAGTTCATATGCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGGAGTATTGTCAAGAGCTGGGTGATTCTAGTTCATATGCTTGC  450

seq1  TGTATGACTGCCAAGTTCTTATCCCAGCACTTTCTCTCCATTGTCTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGACTGCCAAGTTCTTATCCCAGCACTTTCTCTCCATTGTCTAACA  500

seq1  ATTCTTTAATTCTATTTTTTCTTTGACATTGTATGCCTTCAAATAAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAATTCTATTTTTTCTTTGACATTGTATGCCTTCAAATAAGTTA  550

seq1  GTCATGTAGTCATTAATTTAAACTGAAGAATAATGTGTTTTGCAGGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTAGTCATTAATTTAAACTGAAGAATAATGTGTTTTGCAGGCAGA  600

seq1  ATTAATAATATATGTCTATCACAGACAGGAACCTACATCTTGTAAGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAATATATGTCTATCACAGACAGGAACCTACATCTTGTAAGATGT  650

seq1  AAATATGTGTAAAAATGTTTTAAGTAAACATACAGATTGCCTTATATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTGTAAAAATGTTTTAAGTAAACATACAGATTGCCTTATATAAG  700

seq1  TAAGTGGTGTACAAATTATCTCTTGTAACTGTTTCAATCAACATAATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGTGTACAAATTATCTCTTGTAACTGTTTCAATCAACATAATGAC  750

seq1  ATTTCATTATGGAGCCCAGTAAGAAGACTAGCTGAGTACACTGCTCTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTATGGAGCCCAGTAAGAAGACTAGCTGAGTACACTGCTCTATA  800

seq1  TGTATTCTCCATTGTCCTTAGTTTACAGAAGCCCTGGGCAGAAATGGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTCCATTGTCCTTAGTTTACAGAAGCCCTGGGCAGAAATGGTCC  850

seq1  AATCCACAGTTAAGATTTATCCTGTCACATCCATTTTTGTGATATGTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACAGTTAAGATTTATCCTGTCACATCCATTTTTGTGATATGTTAA  900

seq1  TTATTCAGTACCAAAATCAGAGAAC-TTTATTCAAGATAATTCTCAATTT  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTATTCAGTACCAAAATCAGAGAACTTTTATTCAAGATAATTCTCAATTT  950

seq1  GGTTACGTTGACAATATAAATCACCAGAAACATCTACTTCACATTATTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTTACGTTGACAATATAAATCACCAGAAACATCTACTTCACATTATTT-  999

seq1  AATTTCAATCTTACTGTGGTAAATTAATTCATTTAG-ATATTACTATTAC  1048
      ||||||||||||||||| ||||  | |||||||||| |||||||||||||
seq2  AATTTCAATCTTACTGT-GTAA--TTATTCATTTAGAATATTACTATTAC  1046

seq1  TACGTTCTCTGGTTAGTGATCCCTCCTTACTC-TCTCTCCCATCCTCTTT  1097
      |||| ||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TACG-TCTCTGG-TAGTGATCCCTCCTTACTCTTCTCTCCCATCCTCTTT  1094

seq1  GTTACTTTCTTTCTGTCCTTTTA-TTCTTT-CTTAAAGCCCCATATATAT  1145
      | ||||||| ||||||| ||| | |||||| |||||||||   ||||| |
seq2  G-TACTTTCATTCTGTCGTTTAATTTCTTTCCTTAAAGCCGATTATATTT  1143

seq1  AAATAAGTTTCTACCATT-GTGCATTCT-ACTTC  1177
      |  || |||||||||||| ||||||||| |||||
seq2  AGTTAGGTTTCTACCATTGGTGCATTCTAACTTC  1177


seq1: chr4_78690001_78691113
seq2: B6Ng01-339M02.g_63_1163 (reverse)

seq1  CCTGCATCCTCTCTGGGCATCTCCTATCTGGGGATGGTATGAATGCATGG  50
      ||||||| |||||| ||||| |||||||| ||||| ||||| ||||||| 
seq2  CCTGCATTCTCTCT-GGCAT-TCCTATCT-GGGATTGTATG-ATGCATG-  45

seq1  TTGTCTTTCACCATCCTACATAACTAAAAATGTGTAAATATGAGTACCTA  100
       ||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  -TGTCTTTCA-CAT-CTACATAACTAAAAATGTGTAAATATGAGTACCTA  92

seq1  TGCAACTGGAAGTAGCTCTGAAAATAATTATAAACAGATAATAGACAGGG  150
      ||||||| |||||||||||| |||||||||| ||||||| ||||||||||
seq2  TGCAACT-GAAGTAGCTCTG-AAATAATTAT-AACAGAT-ATAGACAGGG  138

seq1  AAGTTCAAATACATTTTATATGAACTATACTATTCTGAAAACCAGCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAATACATTTTATATGAACTATACTATTCTGAAAACCAGCATGC  188

seq1  GCCAAAAGGATTCTTCCTTGACCTGAATGTCAAGACAAAATTTCTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGGATTCTTCCTTGACCTGAATGTCAAGACAAAATTTCTTTAAA  238

seq1  GATCCACAAATGGTACATCAAAATGAAGATTCTGCGCATAAAGTAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACAAATGGTACATCAAAATGAAGATTCTGCGCATAAAGTAAGAAA  288

seq1  AGCTGGATGTTTTCACTGAAGTTTGTGACCATGATGCTTGCCATGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATGTTTTCACTGAAGTTTGTGACCATGATGCTTGCCATGTTTTT  338

seq1  TTTTCCCAGTAAATTGTATCACAAAAATGTATGACTTATATGTGAGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAGTAAATTGTATCACAAAAATGTATGACTTATATGTGAGAAGG  388

seq1  ATATTTACTTTCATCATGGTGAAGAAATATATGGTGGTGTTTCTGAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTTTCATCATGGTGAAGAAATATATGGTGGTGTTTCTGAACTA  438

seq1  AGCCAAAATTGGATAATGGGCTTTGAAATCCACTTCTTGAGGAAGCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAATTGGATAATGGGCTTTGAAATCCACTTCTTGAGGAAGCCTTA  488

seq1  CCCTGAGAAGCATATCTGTTGATGCAAAGAAGAAAATTCACCAAATCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGAAGCATATCTGTTGATGCAAAGAAGAAAATTCACCAAATCCAT  538

seq1  GGTTATTGAACCATTTTTAATTGTGTTTCCTCATTTTCTCCCTTTCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTGAACCATTTTTAATTGTGTTTCCTCATTTTCTCCCTTTCAGAA  588

seq1  GATCAAGCAGAATGTCTATCAGACAACATGGTCATTAAATCTTGAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGCAGAATGTCTATCAGACAACATGGTCATTAAATCTTGAATGAA  638

seq1  GCCTCTGGTTCCAGGAACAGACAGGGTTTTATTGCAAATCTAACTTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGTTCCAGGAACAGACAGGGTTTTATTGCAAATCTAACTTACAT  688

seq1  CACTCTATTAACAAACTTCTTTGAAGCTAGATTTTGTCTTTCTCTGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTATTAACAAACTTCTTTGAAGCTAGATTTTGTCTTTCTCTGTAAT  738

seq1  CAGTAATGCTTTTATGTTTAAACACATACACTAATTTCGGACCTCAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATGCTTTTATGTTTAAACACATACACTAATTTCGGACCTCAAAAT  788

seq1  TAATCTTTCAGTGTTACCGAATGCAACACTAAAGTACAAATCAGCTTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTCAGTGTTACCGAATGCAACACTAAAGTACAAATCAGCTTTGG  838

seq1  ATTCTCTCAGACATACCTGCAAACTTTGTCATAATCATTTGGCCTTTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCAGACATACCTGCAAACTTTGTCATAATCATTTGGCCTTTGGT  888

seq1  TTCTGCTTCTGAATACTGAGAAGTAAATTGGGTGATATCAAAATACTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTCTGAATACTGAGAAGTAAATTGGGTGATATCAAAATACTTTT  938

seq1  CTATCTGTAATGTTTTGTAATTTAGGACTAATGATAAAGCAAGGTGATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTAATGTTTTGTAATTTAGGACTAATGATAAAGCAAGGTGATCA  988

seq1  TTTAATTTTATACTAATATTCTAATTTGATTGTGTTTACCAAAATTGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTATACTAATATTCTAATTTGATTGTGTTTACCAAAATTGAAT  1038

seq1  CTTGTGCATTTCTAACCTTAAACCTAAGTGATATAAATCATTTGCCATGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCATTTCTAACCTTAAACCTAAGTGATATAAATCATTTGCCATGA  1088

seq1  GCTTCTGGAATTC  1113
      |||||||||||||
seq2  GCTTCTGGAATTC  1101


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