BAC Information

Click to search

BAC

Clone NameB6Ng01-339N21
Chromosome4 (Build37)
Map Location 102,585,796 - 102,735,580
singlet/doubletdoublet
Overlap geneSgip1, Tctex1d1, Insl5, Wdr78
Upstream geneLOC332923, LOC100039834, LOC381536, LOC433739, Pde4b
Downstream geneMier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460, LOC622315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339N21.bB6Ng01-339N21.g
ACCGA123746GA123747
length1,1351,023
definitionB6Ng01-339N21.b B6Ng01-339N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,585,796 - 102,586,921)(102,734,569 - 102,735,580)
sequence
gaattccataagcatacaaaaatatcttcactgaaaatagaaacagattt
ttaaaatctgggttatccccctacattgagcctatggaagcaatattgtt
cccagcactccctgcatggaagcttgtgatggggcagacatatatctgtg
ctcgctgagaagtcttgcttgaccgcccttctggctttagccactggact
tccgccaatttctggcatttgcaccaaccacaccagcccttcccctggcc
aatcccctctttcttaccagctcagacaagataatcttactacttcagac
tgatactactatcagtatatgcattgggtataaatagaattcaaatatag
aatagatctttttaaaggaggtatcttatatcaaaataaatcttatttat
agtccctcaaaaacatggttaattttaaagacttaaatacttaattgtag
aatatgtatttagtaggcaacccaatatgtatttaatggcagaaatgaag
atatttctctcgtagcattgctaaatggctggcagtgctttctttctgga
tagtaatgttagttgcttaggagacctaggaagcaaagagctgtggctgc
atcagatcttggctcctctgctctttctatggtcaagtgtttgagaatat
tagtcattgggtttttgctccccaaaacagcattgacttttaccacgtgg
tggtgctgtgagaatgaaagacaaaataacagctactgacctcagatgag
tgcttcatgtaccattttcatgcatgcatgtgtttgtaccctgccacctt
cttcatccctttcaggttgaataatatcctcctgaggtattattgtctcc
ccctctcactgcgggaagaatgctcagaggggttaaatgccttgtccaag
attctacagtaatctagatctacaggtgaactccacgattcagcttgttt
cctccactgcacaatgaatagcagctgcactcgctgaagtagactggtga
tttagcacgtgaccagcagcacacgacctaatgaaaatggttttgaaatt
tcacaggctactagagccaatacttagctgcctgatctgcatgcacacat
cgtgacgtactgattcatttctgatcagtgagctg
gaattcatcatcagtcgcttgtctctttgtccacagagtgattgggcaga
ggaaaggatttagtcttggcatgatagagttgtaaaaagaagtagcttag
agagttttggaggattattttcctatctgctctgtagaaataatgacata
atccaagtttctaaaacaaatgccagaagatcgaaaggaatgatctgttt
gtagctccttatgtgtctatgtcaggaggaaaacacatactggtcacact
aatccctgctagaggatgaccccagtgtgacaactgatgcagaagtctat
gatgtgtttataaagccagtgaggaccaaggttttatattaagtacggga
agtgactatttgaagatttgttttcatgtgccctagaagctatggattgg
agtaactgaaggcagattaacttcttacatcctcaccagcacgcacaaga
cagtctcagctgccatcatagtctgccctactgcactctgtaaatgctta
aaatgtaatagagcatctccccccacagtggccagagcgtatttatcaga
gttcatatggagttacttctgtggacttttcaaacagctcacctaatctg
ctagcagttggctaccacaatggcaccgttgcgatttacaatgtgcagag
cagccacaacattccagttctggacagtaggtaagaatccacaaaggaga
tacacaaacacaagcatactgtttgtcccacgaggagcatttatcagagt
aatgatatttgagtgaatattctgttgttactgagaatgtaataccattg
ttttcaatatgtgtatagtccttcttcctcctctgcctaacttaccaaac
aaacttatctcggcttagtggattcttttgacatcaccttcctccaggaa
acatcattcccttcttttgatgtatcgatgcttaccgtcgtagcacgaaa
ttgttgctgagtagcattcttttggagcttcttgtgtgatgtcccttgag
agcagggtaggaggcttggtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_102585796_102586921
seq2: B6Ng01-339N21.b_43_1177

seq1  GAATTCCATAAGCATACAAAAATATCTTCACTGAAAATAGAAACAGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAGCATACAAAAATATCTTCACTGAAAATAGAAACAGATTT  50

seq1  TTAAAATCTAGGTTATCCCCCTACATTGAGCCTATGGAAGCAATATTGTT  100
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTGGGTTATCCCCCTACATTGAGCCTATGGAAGCAATATTGTT  100

seq1  CCCAGCACTCCCTGCATGGAAGCTTGTGATGGGGCAGACATATATCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTCCCTGCATGGAAGCTTGTGATGGGGCAGACATATATCTGTG  150

seq1  CTCGCTGAGAAGTCTTGCTTGACCGCCCTTCTGGCTTTAGCCACTGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTGAGAAGTCTTGCTTGACCGCCCTTCTGGCTTTAGCCACTGGACT  200

seq1  TCCGCCAATTTCTGGCATTTGCACCAACCACACCAGCCCTTCCCCTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCAATTTCTGGCATTTGCACCAACCACACCAGCCCTTCCCCTGGCC  250

seq1  AATCCCCTCTTTCTTACCAGCTCAGACAAGATAATCTTACTACTTCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTCTTTCTTACCAGCTCAGACAAGATAATCTTACTACTTCAGAC  300

seq1  TGATACTACTATCAGTATATGCATTGGGTATAAATAGAATTCAAATATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTACTATCAGTATATGCATTGGGTATAAATAGAATTCAAATATAG  350

seq1  AATAGATCTTTTTAAAGGAGGTATCTTATATCAAAATAAATCTTATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATCTTTTTAAAGGAGGTATCTTATATCAAAATAAATCTTATTTAT  400

seq1  AGTCCCTCAAAAACATGGTTAATTTTAAAGACTTAAATACTTAATTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTCAAAAACATGGTTAATTTTAAAGACTTAAATACTTAATTGTAG  450

seq1  AATATGTATTTAGTAGGCAACCCAATATGTATTTAATGGCAGAAATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTATTTAGTAGGCAACCCAATATGTATTTAATGGCAGAAATGAAG  500

seq1  ATATTTCTCTCGTAGCATTGCTAAATGGCTGGCAGTGCTTTCTTTCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTCTCGTAGCATTGCTAAATGGCTGGCAGTGCTTTCTTTCTGGA  550

seq1  TAGTAATGTTAGTTGCTTAGGAGACCTAGGAAGCAAAGAGCTGTGGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGTTAGTTGCTTAGGAGACCTAGGAAGCAAAGAGCTGTGGCTGC  600

seq1  ATCAGATCTTGGCTCCTCTGCTCTTTCTATGGTCAAGTGTTTGAGAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCTTGGCTCCTCTGCTCTTTCTATGGTCAAGTGTTTGAGAATAT  650

seq1  TAGTCATTGGGTTTTTGCTCCCCAAAACAGCATTGACTTTTACCACGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTGGGTTTTTGCTCCCCAAAACAGCATTGACTTTTACCACGTGG  700

seq1  TGGTGCTGTGAGAATGAAAGACAAAATAACAGCTACTGGCCTCAGATGAG  750
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGTGCTGTGAGAATGAAAGACAAAATAACAGCTACTGACCTCAGATGAG  750

seq1  TGCTTCATGTACCATTTTCATGCATGCATGTGTTTGTACCCTGCCACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATGTACCATTTTCATGCATGCATGTGTTTGTACCCTGCCACCTT  800

seq1  CTTCATCCCTTTCAGGTTGAATAATATCCTCCTGAGGTATTATTGTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCCTTTCAGGTTGAATAATATCCTCCTGAGGTATTATTGTCTCC  850

seq1  CCCTCCCACTGCGGGAAGAATGCTCAGAGGGGTTAAATGCCTTGCCCAAG  900
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCTCTCACTGCGGGAAGAATGCTCAGAGGGGTTAAATGCCTTGTCCAAG  900

seq1  ATTCTACAGTAATCTAGAAGCTACA-GTGAAATCCAC-ATTCAACTTGTT  948
      ||||||||||||||||| | ||||| ||||| ||||| ||||| ||||||
seq2  ATTCTACAGTAATCTAG-ATCTACAGGTGAACTCCACGATTCAGCTTGTT  949

seq1  TCCTCCATTGCACAATGAATAGCAG-TGCACTTGCTGAAATAGACTGGTG  997
      ||||||| ||||||||||||||||| |||||| |||||| ||||||||||
seq2  TCCTCCACTGCACAATGAATAGCAGCTGCACTCGCTGAAGTAGACTGGTG  999

seq1  ATTTA-CACGTGAACAGCAGCAACACAAC--AAAGAAAAATGTTTT--AA  1042
      ||||| ||||||| ||||||| |||| ||  || |||||  |||||  ||
seq2  ATTTAGCACGTGACCAGCAGC-ACACGACCTAATGAAAATGGTTTTGAAA  1048

seq1  ATTCACA-GCTCTTAGA-CCAATACCTAGCTGCCTTGATCTGC-TTCACA  1089
       |||||| |||  |||| ||||||| |||||||| |||||||| | ||||
seq2  TTTCACAGGCTACTAGAGCCAATACTTAGCTGCC-TGATCTGCATGCACA  1097

seq1  CATC-TAAAGAACTG-TTCATTTTCTGATCAGTGGGCTG  1126
      |||| | | | |||| |||| ||||||||||||| ||||
seq2  CATCGTGACGTACTGATTCA-TTTCTGATCAGTGAGCTG  1135

seq1: chr4_102734569_102735580
seq2: B6Ng01-339N21.g_65_1087 (reverse)

seq1  GAAACAAAGCCTCCTCCCTTGCTCTCAA-GGACATCACAC-AGAAGCTCC  48
      ||||| ||||||||| || ||||||||| ||||||||||| |||||||||
seq2  GAAACCAAGCCTCCTACCCTGCTCTCAAGGGACATCACACAAGAAGCTCC  50

seq1  AAAAGA--TCTACTCAGCAACAATCT-GTG-TAGGACGGTAAGCATCAAA  94
      ||||||   ||||||||||||||| | ||| || ||||||||||||| | 
seq2  AAAAGAATGCTACTCAGCAACAATTTCGTGCTACGACGGTAAGCATCGAT  100

seq1  ACA-CAAAAGAAGGGAATGAAGTTTCCTGGAGG-AGGTGATGTC-AAAGA  141
      ||| |||||||||||||||| |||||||||||| |||||||||| |||||
seq2  ACATCAAAAGAAGGGAATGATGTTTCCTGGAGGAAGGTGATGTCAAAAGA  150

seq1  A-CCACTAAGCCGAGATAAGTTTG-TTGGTAAGGTAGGCAGAGGAGGAAG  189
      | |||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  ATCCACTAAGCCGAGATAAGTTTGTTTGGTAAGTTAGGCAGAGGAGGAAG  200

seq1  AAGGACTATACACATATTGAAAACAATGGTATTACATTCTCAGTAACAAC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTATACACATATTGAAAACAATGGTATTACATTCTCAGTAACAAC  250

seq1  CGAATATTCACTTAAATAACATTACTCTGATAAATGCTCCTCGTGGGACA  289
       ||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  AGAATATTCACTCAAATATCATTACTCTGATAAATGCTCCTCGTGGGACA  300

seq1  AACAGTATGCTTGTGTTTGTGTATCTCCTTTGTGGATTCTTACCTACTGT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATGCTTGTGTTTGTGTATCTCCTTTGTGGATTCTTACCTACTGT  350

seq1  CCAGAACTGGAATGTTGTGGCTGCTCTGCACATTGTAAATCGCAACGGTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACTGGAATGTTGTGGCTGCTCTGCACATTGTAAATCGCAACGGTG  400

seq1  CCATTGTGGTAGCCAACTGCTAGCAGATTAGGTGAGCTGTTTGAAAAGTC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTGGTAGCCAACTGCTAGCAGATTAGGTGAGCTGTTTGAAAAGTC  450

seq1  CACAGAAGTAACTCCATATGAACTCTGATAAATACGCTCTGGCCACTGTG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGTAACTCCATATGAACTCTGATAAATACGCTCTGGCCACTGTG  500

seq1  GGGGGAGATGCTCTATTACATTTTAAGCATTTACAGAGTGCAGTAGGGCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGATGCTCTATTACATTTTAAGCATTTACAGAGTGCAGTAGGGCA  550

seq1  GACTATGATGGCAGCTGAGACTGTCTTGTGCGTGCTGGTGAGGATGTAAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGATGGCAGCTGAGACTGTCTTGTGCGTGCTGGTGAGGATGTAAG  600

seq1  AAGTTAATCTGCCTTCAGTTACTCCAATCCATAGCTTCTAGGGCACATGA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATCTGCCTTCAGTTACTCCAATCCATAGCTTCTAGGGCACATGA  650

seq1  AAACAAATCTTCAAATAGTCACTTCCCGTACTTAATATAAAACCTTGGTC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATCTTCAAATAGTCACTTCCCGTACTTAATATAAAACCTTGGTC  700

seq1  CTCACTGGCTTTATAAACACATCATAGACTTCTGCATCAGTTGTCACACT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGCTTTATAAACACATCATAGACTTCTGCATCAGTTGTCACACT  750

seq1  GGGGTCATCCTCTAGCAGGGATTAGTGTGACCAGTATGTGTTTTCCTCCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCATCCTCTAGCAGGGATTAGTGTGACCAGTATGTGTTTTCCTCCT  800

seq1  GACATAGACACATAAGGAGCTACAAACAGATCATGCCTTTCGATCTTCTG  839
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACATAGACACATAAGGAGCTACAAACAGATCATTCCTTTCGATCTTCTG  850

seq1  GCATTTGTTTTAGAAACTTGGATTATGTCATTATTTCTACAGAGCAGATA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTTTTAGAAACTTGGATTATGTCATTATTTCTACAGAGCAGATA  900

seq1  GGAAAATAATCCTCCAAAACTCTCTAAGCTACTTCTTTTTACAACTCTAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAATCCTCCAAAACTCTCTAAGCTACTTCTTTTTACAACTCTAT  950

seq1  CATGCCAAGACTAAATCCTTTCCTCTGCCCAATCACTCTGTGGACAAAGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAAGACTAAATCCTTTCCTCTGCCCAATCACTCTGTGGACAAAGA  1000

seq1  GACAAGCGACTGATGATGAATTC  1012
      |||||||||||||||||||||||
seq2  GACAAGCGACTGATGATGAATTC  1023