BAC Information

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BAC

Clone NameB6Ng01-340D02
Chromosome16 (Build37)4 (Build37)
Map Location 83,110,617 - 83,111,77940,333,521 - 40,334,048
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340D02.bB6Ng01-340D02.g
ACCGA123973GA123974
length1,1591,039
definitionB6Ng01-340D02.b B6Ng01-340D02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,110,617 - 83,111,779)(40,333,521 - 40,334,048)
sequence
gaattctagagccaacaaagtactgttacttctgcaaatgtgtcactgtt
tctcccatatccagcattcatcctagctaatatgcttttatttttctaag
atagttacatcccagttactttttgtgcaatcattactgatttctatttt
atagtcttccataattctattttgttattgatgacaaaaggattgcatac
tttgtctagcagaaactgtaaggaaagtgttgtgtatacctgggtataag
acacccatccatccttagtgtttcttagtgaagtaacacagcatgtacca
agtaggacttcttagaaaccactctgccttttaaagtgcattcattccac
aaatattcaaataacacgatttcatcttcattttcaaatgttaatttgtt
tactgttgacacattgggaagaatgatatattctcagccgtcaagcgtaa
atctctgataaggagagaatggtacagctaaagcaggaacactgtacttt
gcacaatactgaacaactgagtcaacagcagaaaacattgcttcttcttt
cttgtaaagaaaaatacatatttaatgagcttgtagaggtcgtatgtggt
gaaataatctatttttctgcagcagaaaatgttctgtccaatgagacctt
gcaggttcacatcgcctgcagtgttgtccataattctatttagtattgtg
gagacaaaataaatatggaatctcatggctattgcttctggtgttacctg
ttcttcattaccacgtctctcttcatatagaatttaactggaaccatttc
cagtctacagagttgaatttaaacaaatggcatttccaaacttcccttca
ttactcttccttgatgtgtcctctactttctttaaaatttcacacattca
gaattttgaacctgcctcagcatctgtcagtgtgggcagaatgtagtttt
gagtttccactgaagcaactttccagtcacactgctacttagaaatgtgt
ggtttttagcaagatttatttaatctttcatgccctcatattcatacatt
ttaaaataggcatggagggctgggatgtagcttagttggtagatatttct
cacttaaatacaaaggcttgaactttatccaacatagtaatgcttaaatg
ctccaataa

gaattcacttaaggaaatattcctgctattaatattctttctttttatca
ttaaatataaataataatcactatgtattatcccatcctttttgcagatt
tttgcagatctatgaagatgtactttcttgtagtgatgctatatagacaa
ataaatgacttcctaagtcttaatgattgtcctataagaatccctaacat
ttaatcagtaattgttaagttctcttatagtggtattgcaattagatccc
tttctgatcattaaaacttcagtgagaactctgtcagtctcccatatgtc
accagttatttgctcttagatataactggactttctccttcatagagcac
ctgccaagaggatgtaaaacaattaaccaaatgtataagggaactaacga
attttttataggtgctaggacagaagataaaatattgactgggtttatct
atacaaaacttcactaataacttagttatggttttcataactatggtttt
caccttctatgaacctatggagctgtggcaggtgatggatgtttagccag
aattacccctaatgggtatgcatgaaaacactctctgttgtaaatttcta
tttcaatttatgatttgactttttgtgatgaactttttaacatgtgatct
tgttttctgaaaaatgtataagtactgagggcaaacagatgaaaaagaag
aaaggaatttttttctttcccgacttcgaatctttccaatttccccctta
gctttcataggaaactttttacaacttagtaataaattcaataatcacct
ttcaaagggtcccttttccttcctctgacttccgactagcaggcagtatg
ttagatatgagaagttcctgccgagttaggtcaaagaccacagtacttaa
tcctgtgctgttagactacagacattaatcacctaaaccaacacagcctt
ttaccctcagaaaagcaagacaatatttaggactttttagagttattatc
agcctttcagtgtagtagagacgagacatttttgggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_83110617_83111779
seq2: B6Ng01-340D02.b_47_1205

seq1  GAATTCTAGAGCCAACAAAGTACTGTTACTTCTGCAAATGTGTCACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGCCAACAAAGTACTGTTACTTCTGCAAATGTGTCACTGTT  50

seq1  TCTCCCATATCCAGCATTCATCCTAGCTAATATGCTTTTATTTTTCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATATCCAGCATTCATCCTAGCTAATATGCTTTTATTTTTCTAAG  100

seq1  ATAGTTACATCCCAGTTACTTTTTGTGCAATCATTACTGATTTCTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTACATCCCAGTTACTTTTTGTGCAATCATTACTGATTTCTATTTT  150

seq1  ATAGTCTTCCATAATTCTATTTTGTTATTGATGACAAAAGGATTGCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTCCATAATTCTATTTTGTTATTGATGACAAAAGGATTGCATAC  200

seq1  TTTGTCTAGCAGAAACTGTAAGGAAAGTGTTGTGTATACCTGGGTATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAGCAGAAACTGTAAGGAAAGTGTTGTGTATACCTGGGTATAAG  250

seq1  ACACCCATCCATCCTTAGTGTTTCTTAGTGAAGTAACACAGCATGTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATCCATCCTTAGTGTTTCTTAGTGAAGTAACACAGCATGTACCA  300

seq1  AGTAGGACTTCTTAGAAACCACTCTGCCTTTTAAAGTGCATTCATTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGACTTCTTAGAAACCACTCTGCCTTTTAAAGTGCATTCATTCCAC  350

seq1  AAATATTCAAATAACACGATTTCATCTTCATTTTCAAATGTTAATTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCAAATAACACGATTTCATCTTCATTTTCAAATGTTAATTTGTT  400

seq1  TACTGTTGACACATTGGGAAGAATGATATATTCTCAGCCGTCAAGCGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTGACACATTGGGAAGAATGATATATTCTCAGCCGTCAAGCGTAA  450

seq1  ATCTCTGATAAGGAGAGAATGGTACAGCTAAAGCAGGAACACTGTACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGATAAGGAGAGAATGGTACAGCTAAAGCAGGAACACTGTACTTT  500

seq1  GCACAATACTGAACAACTGAGTCAACAGCAGAAAACATTGCTTCTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATACTGAACAACTGAGTCAACAGCAGAAAACATTGCTTCTTCTTT  550

seq1  CTTGTAAAGAAAAATACATATTTAATGAGCTTGTAGAGGTCGTATGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAAGAAAAATACATATTTAATGAGCTTGTAGAGGTCGTATGTGGT  600

seq1  GAAATAATCTATTTTTCTGCAGCAGAAAATGTTCTGTCCAATGAGACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATCTATTTTTCTGCAGCAGAAAATGTTCTGTCCAATGAGACCTT  650

seq1  GCAGGTTCACATCGCCTGCAGTGTTGTCCATAATTCTATTTAGTATTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTCACATCGCCTGCAGTGTTGTCCATAATTCTATTTAGTATTGTG  700

seq1  GAGACAAAATAAATATGGAATCTCATGGCTATTGCTTCTGGTGTTACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAATAAATATGGAATCTCATGGCTATTGCTTCTGGTGTTACCTG  750

seq1  TTCTTCATTACCACGTCTCTCTTCATATAGAATTTAACTGGAACCATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTACCACGTCTCTCTTCATATAGAATTTAACTGGAACCATTTC  800

seq1  CAGTCTACAGAGTTGAATTTAAACAAATGGCATTTCCAAACTTCCCTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTACAGAGTTGAATTTAAACAAATGGCATTTCCAAACTTCCCTTCA  850

seq1  TTACTCTTCCTTGATGTGTCCTCTACTTTCTTTAAAATTTCACACATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTCCTTGATGTGTCCTCTACTTTCTTTAAAATTTCACACATTCA  900

seq1  GAATTTTGAACCTGCCTCAGGCATCTGTCAGTGTGGGCAGAATGTAGTTT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATTTTGAACCTGCCTCA-GCATCTGTCAGTGTGGGCAGAATGTAGTTT  949

seq1  TGAGTTTCCACTGAAGCAACTTTCCAGTCACACTGCTACTTAGAAATGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCCACTGAAGCAACTTTCCAGTCACACTGCTACTTAGAAATGTG  999

seq1  TGGTTTTTAGC-AGGTTTATTTAATCTTTCATGCCCTCATA-TCATACAT  1048
      ||||||||||| || |||||||||||||||||||||||||| ||||||||
seq2  TGGTTTTTAGCAAGATTTATTTAATCTTTCATGCCCTCATATTCATACAT  1049

seq1  TTTAAAATAGGCATGGAAGGGCTGGGATGTAGCTTAG-TGGTAGAATAAT  1097
      |||||||||||||||| |||||||||||||||||||| |||||||   ||
seq2  TTTAAAATAGGCATGG-AGGGCTGGGATGTAGCTTAGTTGGTAGA--TAT  1096

seq1  TTCTCAC-TAAATACAAA-GCCTGAACTTTAATCCAACATAGTAAATGCT  1145
      ||||||| |||||||||| || |||||||| |||||||||||| ||||||
seq2  TTCTCACTTAAATACAAAGGCTTGAACTTT-ATCCAACATAGT-AATGCT  1144

seq1  TTAAAAATGGCTCAATAA  1163
      |   |||||   ||||||
seq2  T---AAATGCTCCAATAA  1159


seq1: chr4_40333521_40334048
seq2: B6Ng01-340D02.g_418_848

seq1  AAGAGGTTGTAAAACAATTAACCAAAGGTCATAAAAAAGGAAATAGTG-A  49
      |||||| ||||||||||||||||||| ||    | || |||| ||  | |
seq2  AAGAGGATGTAAAACAATTAACCAAATGT----ATAAGGGAACTAACGAA  46

seq1  TTTATTATAGGTGCTAGGACAGAAGACAAAATATTGACTGGGTTTATCTA  99
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTTTATAGGTGCTAGGACAGAAGATAAAATATTGACTGGGTTTATCTA  96

seq1  TACAAAACTTCACTTATAACTTAGTTATGGCTTTAA--------------  135
      |||||||||||||| ||||||||||||||| ||| |              
seq2  TACAAAACTTCACTAATAACTTAGTTATGGTTTTCATAACTATGGTTTTC  146

seq1  ACCTTCTGTGACCCTGTGGAGCTGAGACAGGTGATGGATGTTTAGCCAGA  185
      ||||||| ||| ||| |||||||| | |||||||||||||||||||||| 
seq2  ACCTTCTATGAACCTATGGAGCTGTGGCAGGTGATGGATGTTTAGCCAG-  195

seq1  TAATTACTCCTAACGGATATGCATCTAAACATTCTCTGTTGTAAACTTCT  235
       |||||| ||||| || |||||||  ||||| ||||||||||||| ||||
seq2  -AATTACCCCTAATGGGTATGCATGAAAACACTCTCTGTTGTAAATTTCT  244

seq1  ATTTCAATTTATGATTTGATTTTTTGTGTGAACTTGTGATGAACTTTGTA  285
      ||||||||||||||||||| |||          |||||||||||||| ||
seq2  ATTTCAATTTATGATTTGACTTT----------TTGTGATGAACTTTTTA  284

seq1  ACATGTGATCATATATTCTGAAAGATGTTTAAGTACTGAGGACAACAAGA  335
      |||||||||| | | |||||||| |||| |||||||||||| |||  |||
seq2  ACATGTGATCTTGTTTTCTGAAAAATGTATAAGTACTGAGGGCAAACAGA  334

seq1  AGAGAGAGAAGAATTTTTTTGCCTTTCCCCACTTAGAGTAGAATATTTTT  385
       || | ||||||                                      
seq2  TGAAAAAGAAGA--------------------------------------  346

seq1  CCTTTTTCCCCCGCCTAGGAGAATTTTTTCAGTTAGAAGAATTTTTCCCT  435
                                          |||           
seq2  ------------------------------------AAG-----------  349

seq1  TACTAGAATTTTCTTCCTTTTCCCCACTTAGAATCTTTCTGCTTTTCCCC  485
           ||||||| |||  |||||| |||| |||||||||   ||| ||||
seq2  -----GAATTTTTTTC--TTTCCCGACTTCGAATCTTTCCAATTTCCCCC  392

seq1  TTAGATAGCTTGCATAGGAAACTTTTTACAACTTAATAATAAA  528
      |    |||||| ||||||||||||||||||||||| |||||||
seq2  T----TAGCTTTCATAGGAAACTTTTTACAACTTAGTAATAAA  431


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