BAC Information

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BAC

Clone NameB6Ng01-340H03
Chromosome4 (Build37)
Map Location 64,313,145 - 64,448,290
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340H03.bB6Ng01-340H03.g
ACCGA124148GA124149
length1,234237
definitionB6Ng01-340H03.b B6Ng01-340H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,313,145 - 64,314,393)(64,448,054 - 64,448,290)
sequence
gaattcaggatgctagaggcaactgcaaacccctgcagaaatctttgtgc
caatgcaaagctgctaaaccatcaactgaatggttatccataattatttt
tctacaatgagtgggtgtcagatcaataacagatagctacatagtcaaag
ggatttaaagcacagttttatcttacctgaaacagaaatagggaccatta
ccaaacaagctgaaacaggaaccattgaccaatgaaatgtaaaattaaat
gacctacaagaaacctaaatctaaataaaatgaatagatatcaatatatg
ataaaatgtacttattatgtaagccatttgagccagccctttctgtcatt
ggtaaccaagaacacattaacacatacagatccattcacatcttgctctt
gataaaattaaatgaatatttgaaaaagttgcaattgtagaatttactcc
atcttacaacaaagtaaaacctagttagtctaagataatcagaatgacct
cattccttttgctggtatttggattatatatatcacattttatgtttatg
gccaaagaaatgtgcaactacccttgaaaacttgtggaaaagtttcttca
tgctactttttgaatatagcatttgttattgaaagaaaattctgaaatct
atacagaactccactaaatggaacccagtgccatttcttacttttaatag
taagacaaatactcactcaaatataatattaatgtgttggggtgagatgt
ttagacaggctgtagggagccaggcttagaagcaaacttacatagtggag
acagccaaaaaagattttgtaaagaacacaagtctttggctcatcaatga
aatgtaaaattaaatgacctacaacaaacctaaatctaaataaaatgaat
agatatcaatatatgataaaatttacttattatgtaagccatttaagcca
gccctttctgtcattggtaaccagaacacattaacacatacaaaagctag
ccacacatgtatcattttcccacattgctgctcatgaaaatgatgaaata
gtttttttttttccagaaattcaaacatggaaggaggcatctagtttagt
agcagaacttcaagaacatcatatagcaagaatgtgtgtttggtttattg
ggttcacctcaacttaaatcataaagaacgtaatgaacgcaggtagtcag
cagtgagacaaggctctggccaggtgaaaagaga

acctggagtgcaaagacagacaaataaaagcttttctccaggcccctttt
aaaatcaggttgtgtctcttcacttcacattccatgaccacttgttcttt
agttgttgagatatattagtattatatgtaaacatatatgaaatatatta
atatgttatataatatataatatattacaaaattatgtatcacattatat
atatatatatatatgtatgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_64313145_64314393
seq2: B6Ng01-340H03.b_47_1280

seq1  GAATTCAGGATGCTAGAGGCAACTGCAAACCCCTGCAGAAATCTTTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATGCTAGAGGCAACTGCAAACCCCTGCAGAAATCTTTGTGC  50

seq1  CAATGCAAAGCTGCTAAACCATCAACTGAATGGTTATCCATAATTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAAAGCTGCTAAACCATCAACTGAATGGTTATCCATAATTATTTT  100

seq1  TCTACAATGAGTGGGTGTCAGATCAATAACAGATAGCTACATAGTCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATGAGTGGGTGTCAGATCAATAACAGATAGCTACATAGTCAAAG  150

seq1  GGATTTAAAGCACAGTTTTATCTTACCTGAAACAGAAATAGGGACCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAAAGCACAGTTTTATCTTACCTGAAACAGAAATAGGGACCATTA  200

seq1  CCAAACAAGCTGAAACAGGAACCATTGACCAATGAAATGTAAAATTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAGCTGAAACAGGAACCATTGACCAATGAAATGTAAAATTAAAT  250

seq1  GACCTACAAGAAACCTAAATCTAAATAAAATGAATAGATATCAATATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACAAGAAACCTAAATCTAAATAAAATGAATAGATATCAATATATG  300

seq1  ATAAAATGTACTTATTATGTAAGCCATTTGAGCCAGCCCTTTCTGTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGTACTTATTATGTAAGCCATTTGAGCCAGCCCTTTCTGTCATT  350

seq1  GGTAACCAAGAACACATTAACACATACAGATCCATTCACATCTTGCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCAAGAACACATTAACACATACAGATCCATTCACATCTTGCTCTT  400

seq1  GATAAAATTAAATGAATATTTGAAAAAGTTGCAATTGTAGAATTTACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATTAAATGAATATTTGAAAAAGTTGCAATTGTAGAATTTACTCC  450

seq1  ATCTTACAACAAAGTAAAACCTAGTTAGTCTAAGATAATCAGAATGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACAACAAAGTAAAACCTAGTTAGTCTAAGATAATCAGAATGACCT  500

seq1  CATTCCTTTTGCTGGTATTTGGATTATATATATCACATTTTATGTTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTTGCTGGTATTTGGATTATATATATCACATTTTATGTTTATG  550

seq1  GCCAAAGAAATGTGCAACTACCCTTGAAAACTTGTGGAAAAGTTTCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGAAATGTGCAACTACCCTTGAAAACTTGTGGAAAAGTTTCTTCA  600

seq1  TGCTACTTTTTGAATATAGCATTTGTTATTGAAAGAAAATTCTGAAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTTTTGAATATAGCATTTGTTATTGAAAGAAAATTCTGAAATCT  650

seq1  ATACAGAACTCCACTAAATGGAACCCAGTGCCATTTCTTACTTTTAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAACTCCACTAAATGGAACCCAGTGCCATTTCTTACTTTTAATAG  700

seq1  TAAGACAAATACTCACTCAAATATAATATTAATGTGTTGGGGTGAGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAATACTCACTCAAATATAATATTAATGTGTTGGGGTGAGATGT  750

seq1  TTAGACAGGCTGTAGGGAGCCAGGCTTAGAAGCAAACTTACATAGTGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGGCTGTAGGGAGCCAGGCTTAGAAGCAAACTTACATAGTGGAG  800

seq1  ACAGCCAAAAAAGATTTTGTAAAGAACACAAGTCTTTGGCTCATCAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAAAAAGATTTTGTAAAGAACACAAGTCTTTGGCTCATCAATGA  850

seq1  AATGTAAAATTAAATGACCTACAACAAACCTAAATCTAAATAAAATGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAATTAAATGACCTACAACAAACCTAAATCTAAATAAAATGAAT  900

seq1  AGATATCAATATATGATAAAATTTACTTATTATGTAAGCCATTTAAGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCAATATATGATAAAATTTACTTATTATGTAAGCCATTTAAGCCA  950

seq1  GCCCTTTCTGTCATTGGTAACCAAGAACACATTAACACATACAAAAGCTA  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCCCTTTCTGTCATTGGTAACC-AGAACACATTAACACATACAAAAGCTA  999

seq1  GCCACACATGTATCATTTTCCCACATTGCTGCTCATGAAAAATGATGAAA  1050
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCCACACATGTATCATTTTCCCACATTGCTGCTCATG-AAAATGATGAAA  1048

seq1  TAGGTTTTTTTTTTCCAGAAATTCAAACATGGAAGGGAGGGAATTCTAGT  1100
      ||| |||||||||||||||||||||||||||||| ||||| |  ||||||
seq2  TAGTTTTTTTTTTTCCAGAAATTCAAACATGGAA-GGAGGCA--TCTAGT  1095

seq1  TTAGTAGCAGAACTCCAAGAACATTCATTATAGCAAG-ATGTTGGTGTTT  1149
      |||||||||||||| |||||||| ||| ||||||||| ||||  ||||||
seq2  TTAGTAGCAGAACTTCAAGAACA-TCA-TATAGCAAGAATGT--GTGTTT  1141

seq1  TGTTTTATGGG-TCACCTCCATACTAAAATCATAAAGAGACAGTAATTGA  1198
       ||||  |||| |||||||   ||| |||||||||||| || |||| |||
seq2  GGTTTATTGGGTTCACCTC--AACTTAAATCATAAAGA-AC-GTAA-TGA  1186

seq1  ACAGCAAAGGGTAGTCAGCAGGTGAAGACAAGG--CTGGGCA-GTGAAAA  1245
      || |||   ||||||||||| ||| ||||||||  |||| || |||||||
seq2  AC-GCA---GGTAGTCAGCA-GTG-AGACAAGGCTCTGGCCAGGTGAAAA  1230

seq1  GAGA  1249
      ||||
seq2  GAGA  1234


seq1: chr4_64448054_64448290
seq2: B6Ng01-340H03.g_72_308 (reverse)

seq1  CACACACACACACACACACATACATATATATATATATATATAATGTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATACATATATATATATATATATAATGTGATA  50

seq1  CATAATTTTGTAATATATTATATATTATATAACATATTAATATATTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTGTAATATATTATATATTATATAACATATTAATATATTTCAT  100

seq1  ATATGTTTACATATAATACTAATATATCTCAACAACTAAAGAACAAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTACATATAATACTAATATATCTCAACAACTAAAGAACAAGTGG  150

seq1  TCATGGAATGTGAAGTGAAGAGACACAACCTGATTTTAAAAGGGGCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAATGTGAAGTGAAGAGACACAACCTGATTTTAAAAGGGGCCTGG  200

seq1  AGAAAAGCTTTTATTTGTCTGTCTTTGCACTCCAGGT  237
      |||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCTTTTATTTGTCTGTCTTTGCACTCCAGGT  237


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