BAC Information

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BAC

Clone NameB6Ng01-340M14
Chromosome4 (Build37)
Map Location 108,146,132 - 108,234,781
singlet/doubletdoublet
Overlap geneZcchc11, LOC100040110
Upstream geneGlis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728
Downstream genePrpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340M14.bB6Ng01-340M14.g
ACCGA124376GA124377
length1,1441,107
definitionB6Ng01-340M14.b B6Ng01-340M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,233,623 - 108,234,781)(108,146,132 - 108,147,246)
sequence
gaattcaatcaacaaggcaggcaagcacaacaactacttagccatcttgc
aagccttaccttaagaccctttccttcaatagcacatcacattatcatca
tttacaaagaaaagtgagttgggagtttaaagttttaactgggaatcatt
tttatggaaggtgattaggcaaaacctttagaacatttatccttagggct
cagtggtgaagtgaatactgcactgcagaagctgtgcattcaattccttg
cacctacttcaagtggctcatactcacctgtaactacagcctcagaggac
tgaacaccttttagactcagggcacctgtacacatatgcatatatactcc
caacatagagacacagttaaaaaatttaaaaccttttattctttgtgtca
tttccattcaccctagcagaataaaatctacaaataacactttttgccat
cactgtgcatgtattttatttataggaaaaaaacttatagaagagcaaag
attatgtggagactgaataaattatatattttgcttaatgttttgttttg
gtattctgagataggcttaactggcctggaattcggtatgtagaccaggc
tggctgtggaagagatctacctacctgtctcctaagtgctgagattaaag
gtatgtgccactacatacagcttattagtatggtttttaataatcacaat
gggccaaggtaaaaccacctctgtatcaaatgacacacaaattatataac
aaaaaaatgattatggttttcagagtatgtatgtgttccctaggactgat
tatttttttcgtactattaacggctttttcaaacaaaactgagctattct
gtaaattacaaacagattttctgtacctcagcttagttactgaattttac
aaactgaaaggagaggcatattatgaccaaagttagtgaatggaacacta
tcattgatgtaaagattggcttaatgatatgctgctgtcaggaaaggggc
tagagctcctagcatgcttcttgtacttttgaaagtttctttggattttg
tttcagtgaaaacctcagtgtacacagagcagaaggacagtgaaagaata
tcatctttatcccagatgaaatatttgagcgctgactaattttt
gaattcaggttgtcagactttgagacaaactctcttataagctaagccat
ttcgttggctttttttttttttttttaaataagatgtgtctgtttctgta
ggaatttaggaagagccatttatctaaggaacttcaaaaacattttttgt
gtattgggtgaatatgtgcatgtgagtgctggggcccatggaggccagag
ctgttggatccactggcatggggatttataggtgattgtgagccacatga
tttagtttctggcaattatagttcagtcctcggcaagggcagtatattct
cttaacctctgagtcatctctctagctcttggcaaccctttttttattta
tttaattttttttttcgagacagggtttctctgtgtagccctggctgttc
tggaacttactctgtagaccaggctgtcctggaactcagaaatccacctg
ccactgcctccggagtgctgggatcaaaggtgtgcgccaccacgcccggc
tttggcaacctttttttttttttaatttttgtttatttgttttgttttga
gagagggtctttctttctttctttttttggtttttcgagacagggtttct
ctttatagccctggctgtcctggaactcactttgtagaccaggctggcct
cgaactcagaaatccgcctgcctctgcctcccgagtgctgggattaaagg
cgtgcgccaccacgccgggctgcgccaccacgcccggctggcaacccttt
taacagttgtatagaacatcaagaataggaaaagcaaaatgtgtttatta
ttaaatacaaaaaacacaaaatccctgggcggaaactttttgtttgtttt
gtttttgtttttctatccattttctttgtagactaactgggccttgaatt
tagaaggttcagctgcctcttcctcgagtgctagaatttctgtacatggc
caccacctggcgcaaaaacattttttacagttgtaaattgttatagattt
accagaaaatattaaaatagtaatatacacctgtgagaatggcttagagg
actgctgaatctttatcctgaatttacatgaagaggagagaaagacttga
ctccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_108233623_108234781
seq2: B6Ng01-340M14.b_47_1190 (reverse)

seq1  AAAAATTTTATTTCAGCGCTCAAATATTTCATCTGGGGATTAAAAGAATG  50
      |||||||     |||||||||||||||||||||| |||||  |||| |||
seq2  AAAAATT---AGTCAGCGCTCAAATATTTCATCT-GGGAT--AAAG-ATG  43

seq1  ATATTCCTTTCACTGTCCTTTCTGCTTCTGTGTACAACTGAGGTTTTCAC  100
      ||||| |||||||||||| |||||| ||||||||| ||||||||||||||
seq2  ATATT-CTTTCACTGTCC-TTCTGC-TCTGTGTAC-ACTGAGGTTTTCAC  89

seq1  TGAAACAAAATCCAAAGAAACCTTTTCAAAAAGTAACAAGGAAGCATGCT  150
      |||||||||||||||||||||  |||| |||||| |||| ||||||||||
seq2  TGAAACAAAATCCAAAGAAAC--TTTC-AAAAGT-ACAA-GAAGCATGCT  134

seq1  AGGAGCTCTAGCCCCTTTCCTGACAGCAGCATATCATTAAGCCAATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTCTAGCCCCTTTCCTGACAGCAGCATATCATTAAGCCAATCTTT  184

seq1  ACATCAATGATAGTGTTCCATTCACTAACTTTGGTCATAATATGCCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAATGATAGTGTTCCATTCACTAACTTTGGTCATAATATGCCTCTC  234

seq1  C-TTCAGTTTGTAAAATTCAGTAACTAAGCTGAGGTACAGAAAATCTGTT  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTTTGTAAAATTCAGTAACTAAGCTGAGGTACAGAAAATCTGTT  284

seq1  TGTAATTTACAGAATAGCTCAGTTTTGTTTGAAAAAGCCGTTAATAGTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTACAGAATAGCTCAGTTTTGTTTGAAAAAGCCGTTAATAGTAC  334

seq1  GAAAAAAATAATCAGTCCTAGGGAACACATACATACTCTGAAAACCATAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATAATCAGTCCTAGGGAACACATACATACTCTGAAAACCATAA  384

seq1  TCATTTTTTTGTTATATAATTTGTGTGTCATTTGATACAGAGGTGGTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTTGTTATATAATTTGTGTGTCATTTGATACAGAGGTGGTTTT  434

seq1  ACCTTGGCCCATTGTGATTATTAAAAACCATACTAATAAGCTGTATGTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGCCCATTGTGATTATTAAAAACCATACTAATAAGCTGTATGTAG  484

seq1  TGGCACATACCTTTAATCTCAGCACTTAGGAGACAGGTAGGTAGATCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATACCTTTAATCTCAGCACTTAGGAGACAGGTAGGTAGATCTCT  534

seq1  TCCACAGCCAGCCTGGTCTACATACCGAATTCCAGGCCAGTTAAGCCTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCCAGCCTGGTCTACATACCGAATTCCAGGCCAGTTAAGCCTAT  584

seq1  CTCAGAATACCAAAACAAAACATTAAGCAAAATATATAATTTATTCAGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATACCAAAACAAAACATTAAGCAAAATATATAATTTATTCAGTC  634

seq1  TCCACATAATCTTTGCTCTTCTATAAGTTTTTTTCCTATAAATAAAATAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATAATCTTTGCTCTTCTATAAGTTTTTTTCCTATAAATAAAATAC  684

seq1  ATGCACAGTGATGGCAAAAAGTGTTATTTGTAGATTTTATTCTGCTAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGTGATGGCAAAAAGTGTTATTTGTAGATTTTATTCTGCTAGGG  734

seq1  TGAATGGAAATGACACAAAGAATAAAAGGTTTTAAATTTTTTAACTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGAAATGACACAAAGAATAAAAGGTTTTAAATTTTTTAACTGTGT  784

seq1  CTCTATGTTGGGAGTATATATGCATATGTGTACAGGTGCCCTGAGTCTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGTTGGGAGTATATATGCATATGTGTACAGGTGCCCTGAGTCTAA  834

seq1  AAGGTGTTCAGTCCTCTGAGGCTGTAGTTACAGGTGAGTATGAGCCACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTCAGTCCTCTGAGGCTGTAGTTACAGGTGAGTATGAGCCACTT  884

seq1  GAAGTAGGTGCAAGGAATTGAATGCACAGCTTCTGCAGTGCAGTATTCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGTGCAAGGAATTGAATGCACAGCTTCTGCAGTGCAGTATTCAC  934

seq1  TTCACCACTGAGCCCTAAGGATAAATGTTCTAAAGGTTTTGCCTAATCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACTGAGCCCTAAGGATAAATGTTCTAAAGGTTTTGCCTAATCAC  984

seq1  CTTCCATAAAAATGATTCCCAGTTAAAACTTTAAACTCCCAACTCACTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATAAAAATGATTCCCAGTTAAAACTTTAAACTCCCAACTCACTTT  1034

seq1  TCTTTGTAAATGATGATAATGTGATGTGCTATTGAAGGAAAGGGTCTTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAAATGATGATAATGTGATGTGCTATTGAAGGAAAGGGTCTTAA  1084

seq1  GGTAAGGCTTGCAAGATGGCTAAGTAGTTGTTGTGCTTGCCTGCCTTGTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGCTTGCAAGATGGCTAAGTAGTTGTTGTGCTTGCCTGCCTTGTT  1134

seq1  GATTGAATTC  1159
      ||||||||||
seq2  GATTGAATTC  1144

seq1: chr4_108146132_108147246
seq2: B6Ng01-340M14.g_67_1173

seq1  GAATTCAGGTTGTCAGACTTTGAGACAAACTCTCTTATAAGCTAAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTGTCAGACTTTGAGACAAACTCTCTTATAAGCTAAGCCAT  50

seq1  TTCGTTGGCTTTTTTTTTTTTTTTTTAAATAAGATGTGTCTGTTTCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTGGCTTTTTTTTTTTTTTTTTAAATAAGATGTGTCTGTTTCTGTA  100

seq1  GGAATTTAGGAAGAGCCATTTATCTAAGGAACTTCAAAAACATTTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTAGGAAGAGCCATTTATCTAAGGAACTTCAAAAACATTTTTTGT  150

seq1  GTATTGGGTGAATATGTGCATGTGAGTGCTGGGGCCCATGGAGGCCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGGTGAATATGTGCATGTGAGTGCTGGGGCCCATGGAGGCCAGAG  200

seq1  CTGTTGGATCCACTGGCATGGGGATTTATAGGTGATTGTGAGCCACATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGATCCACTGGCATGGGGATTTATAGGTGATTGTGAGCCACATGA  250

seq1  TTTAGTTTCTGGCAATTATAGTTCAGTCCTCGGCAAGGGCAGTATATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTCTGGCAATTATAGTTCAGTCCTCGGCAAGGGCAGTATATTCT  300

seq1  CTTAACCTCTGAGTCATCTCTCTAGCTCTTGGCAACCCTTTTTTTATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCTCTGAGTCATCTCTCTAGCTCTTGGCAACCCTTTTTTTATTTA  350

seq1  TTTAATTTTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTC  400

seq1  TGGAACTTACTCTGTAGACCAGGCTGTCCTGGAACTCAGAAATCCACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTTACTCTGTAGACCAGGCTGTCCTGGAACTCAGAAATCCACCTG  450

seq1  CCACTGCCTCCGGAGTGCTGGGATCAAAGGTGTGCGCCACCACGCCCGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCTCCGGAGTGCTGGGATCAAAGGTGTGCGCCACCACGCCCGGC  500

seq1  TTTGGCAACCTTTTTTTTTTTTTAATTTTTGTTTATTTGTTTTGTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAACCTTTTTTTTTTTTTAATTTTTGTTTATTTGTTTTGTTTTGA  550

seq1  GAGAGGGTCTTTCTTTCTTTCTTTTTTTGGTTTTTCGAGACAGGGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTCTTTCTTTCTTTCTTTTTTTGGTTTTTCGAGACAGGGTTTCT  600

seq1  CTTTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCT  650

seq1  CGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGG  700

seq1  CGTGCGCCACCACGCCGGGCTGCGCCACCACGCCCGGCTGGCAACCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGCCACCACGCCGGGCTGCGCCACCACGCCCGGCTGGCAACCCTTT  750

seq1  TAACAGTTGTATAGAACATCAAGAATAGGAAAAGCAAAATGTGTTTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTGTATAGAACATCAAGAATAGGAAAAGCAAAATGTGTTTATTA  800

seq1  TTAAATAC-AAAAACACAAAATCCCTGGGCGGAAACTTTTTGTTTTGTTT  849
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  TTAAATACAAAAAACACAAAATCCCTGGGCGGAAACTTTTTG-TTTGTTT  849

seq1  TGTTTTTGTTTTTCTATCCATTTTCTTTGTAGACCTAACT-GGCCTTGAA  898
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  TGTTTTTGTTTTTCTATCCATTTTCTTTGTAGA-CTAACTGGGCCTTGAA  898

seq1  TTTAG-AGGTCCAGCTGCCTCTTCCTCGAGTGCTAGAATTTCTGTACCAT  947
      ||||| |||| ||||||||||||||||||||||||||||||||||| |||
seq2  TTTAGAAGGTTCAGCTGCCTCTTCCTCGAGTGCTAGAATTTCTGTA-CAT  947

seq1  GGCCACCACCTGGCGCAAAAACATTTTTTACAGTTGTAAATTGTTATAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCACCTGGCGCAAAAACATTTTTTACAGTTGTAAATTGTTATAGA  997

seq1  TTTTACCAGAAAATATTAAAATAGTTAATATACACCTGTGAG-ATGGCTT  1046
       ||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  -TTTACCAGAAAATATTAAAATAG-TAATATACACCTGTGAGAATGGCTT  1045

seq1  AGAGGGACTTGCTG-ATCTTTAATCCCTGGAATCCACATGAAAAGAGGAA  1095
      ||| |||| ||||| |||||| ||||   ||||  |||||  |||||| |
seq2  AGA-GGAC-TGCTGAATCTTT-ATCC--TGAATTTACATG--AAGAGG-A  1087

seq1  GAGAAAGACTTGACTTCATA  1115
      ||||||||||||||| ||||
seq2  GAGAAAGACTTGACTCCATA  1107