BAC Information

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BAC

Clone NameB6Ng01-340M18
Chromosome4 (Build37)1 (Build37)
Map Location 56,897,528 - 56,898,601152,002,863 - 152,003,472
singlet/doubletsingletsinglet
Overlap geneD730040F13Rik
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1
Downstream gene6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340M18.bB6Ng01-340M18.g
ACCGA124384GA124385
length1,071864
definitionB6Ng01-340M18.b B6Ng01-340M18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,897,528 - 56,898,601)(152,002,863 - 152,003,472)
sequence
gaattccgctgtcctgggctccacaggaagacggcctctagacagggaag
aagggaggggagggaatgatctaatcctagtgttaacaccccatgttggg
cccgaagccttggtcatgctcctacatcccgctgttcgaggcttcctgac
aagacggagttttcttaaccatcgataaatgggtgtgtcgggatgcacag
ctctggttcttgcatttggaggcacaggacggtggatctccaaaatccga
tccttccagggctaccccatgacccactgacctccagtgtctttaaaaat
atgagcaaaagtgatataaaggtatatggaccaatgggcttctgatcaac
tgactaactcaaagctactctgatcaattcaaaagacatgatatttaaca
caaactgagctgcactactctttaggagtctaccaagaaggatacaatgg
tggaaggggaaactgagtttgagatataatacatgagatagatagattta
aaaaatgaataagaatacagaactacccacagacttgattatatgatggt
tgctgcactgtcggaccaacttctcagtgactcaaagtacacaagaatat
ataatgacacagcagaactcagtgcttccccactggtgacaagctggaca
acataatacagtctctagaaggttaaacctatttattctgtttatcttgt
ttctaggctgtatgtacatctgcatgacttacacagaaaccccattttgt
aaggttttattgtttgattctgggatagtctctgctgcccaagctgttga
ttctctcgacgctctgccttccacgtgctggggttagggcatgagacaac
acacttactttactttgcaagtttttgacattaaatcttgatacacagga
aacattccacttctaggcatttcaagcaggtaaaatataattcacaacca
ctatgatgtgcataccagatgacagaatcttgtcttttatagccataaat
agcatctacttgatgccttttaatactgcactgaaaatgaggctggtcac
tggagaccatgatagattgag
gaattctccccaaagctccagggcgccctctcgtggccatctctgcgcag
gacaaaacattgtctggaactgtcttcagaggtcccagcaaccctcctgc
agcctccttcccattattctgctgctggtcaacttagctccttcaggtct
cctggctctcccatgagagatggcttctttgttctatttatgtattctag
ggactctttaaagcatttccccagaaccggggatgggggtgggggagttt
tgttcttgcttcctttgatactactggcagagagttagcatgggatttaa
agattagtagaatgtcaggtcatcaagattaaatgtcaggactggtaaat
cctatttaacagtatagaaatgcttaaaatgacccaacactcttctcaag
tatatttgctaagtattaaatattcttaaagcactactagtattaatggt
cataagatgaacacaagaactacatcactagcagggacaccttctgtttc
ttcctgctactggctgctgctttgttgctggaagccaagaatttcaattc
atgctaaatgcttaggtcatttattgttaatgtctagagcaaaaagcctc
atgttaagtgtcaacagccatcaactggcttctacaactctaaggcataa
taagccctgtcctagcaaggcttggagatattaagactttggctagttca
actcaaggcctttggacattcaagggccaaggttgctgtgttagatttat
gtaaattttcacataagctagagacatctgaatttaccaaagggacctca
atttagaaaatgtccccatagtcttccttcctgcctcttccttccttcct
ttctttcttccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_56897528_56898601
seq2: B6Ng01-340M18.b_42_1112

seq1  GAATTCAGCTGTCCTGGGCTCCACAGGAAGACGGCCTCAAGACAGGGAAG  50
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  GAATTCCGCTGTCCTGGGCTCCACAGGAAGACGGCCTCTAGACAGGGAAG  50

seq1  AAGGGAGGGGAGGGAATGATCTAGTCCTAGTGTTAACAGCCCAGGTTGGC  100
      ||||||||||||||||||||||| |||||||||||||| |||| ||||| 
seq2  AAGGGAGGGGAGGGAATGATCTAATCCTAGTGTTAACACCCCATGTTGGG  100

seq1  GGTGAAGCCTTGGTCAGTCACCTACATCCCGCTGTTCTAGTCTTCCTGAG  150
         |||||||||||||  | ||||||||||||||||| || |||||||| 
seq2  CCCGAAGCCTTGGTCATGCTCCTACATCCCGCTGTTCGAGGCTTCCTGAC  150

seq1  AAAACGGACTTTTCTTAGCCATCACTAAATGGGTGTGTCGGGATGCAGAG  200
      || ||||| |||||||| |||||  |||||||||||||||||||||| ||
seq2  AAGACGGAGTTTTCTTAACCATCGATAAATGGGTGTGTCGGGATGCACAG  200

seq1  CTCTGGTTCTTGCATTTGGAGGCACAGGAAGGTGGATCTCCAAAATCCAA  250
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  CTCTGGTTCTTGCATTTGGAGGCACAGGACGGTGGATCTCCAAAATCCGA  250

seq1  GCCAGCAAGGGCTACACAATGACACACTGAGATCCGGTCTCAATAAAAAT  300
       ||  | |||||||| | ||||| ||||||  ||| || ||  |||||||
seq2  TCCTTCCAGGGCTACCCCATGACCCACTGACCTCCAGTGTCTTTAAAAAT  300

seq1  ATGAACAAACAAAATATAAAGGTATGAGCACCAATGGGCTTCTGAGCAAC  350
      |||| ||||    ||||||||||||  | |||||||||||||||| ||||
seq2  ATGAGCAAAAGTGATATAAAGGTATATGGACCAATGGGCTTCTGATCAAC  350

seq1  TGACTAACTCAGAAGCTACTCTGATCAATTCAAAAGACATGATATTTAAA  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  TGACTAACTCA-AAGCTACTCTGATCAATTCAAAAGACATGATATTTAAC  399

seq1  ACAAAGTGAGCTGCACTACACTTTAAAATTCTACCTAGAAGGATAGAAGT  450
      ||||| ||||||||||||| |||||  | |||||| ||||||||| ||  
seq2  ACAAACTGAGCTGCACTACTCTTTAGGAGTCTACCAAGAAGGATACAATG  449

seq1  GTGGAAGGGGAAACTGAGTTTGAGATATAATACATGAGATAGATAGA--C  498
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  GTGGAAGGGGAAACTGAGTTTGAGATATAATACATGAGATAGATAGATTT  499

seq1  AAGAGAT-AATAGAGAGGCAGACAGAGAGACAGACAGACAGAAGTATAGA  547
      || | || |||| |||   | |||||   ||  ||||||   | ||||  
seq2  AAAAAATGAATA-AGA---ATACAGAACTACCCACAGACTTGATTATATG  545

seq1  AGTGTAAAGGGACTGTCAGACCAACTTCTCAGTGACTCAAAGTACACAAG  597
      |  ||    | |||||| ||||||||||||||||||||||||||||||||
seq2  ATGGTTGCTGCACTGTCGGACCAACTTCTCAGTGACTCAAAGTACACAAG  595

seq1  AATATATAATGACACAGCAGAACTCAGTGCTTCCCCACTGGTGACAAGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAATGACACAGCAGAACTCAGTGCTTCCCCACTGGTGACAAGCT  645

seq1  GGACAACATAATACAGTCTCTAGAAGGTTAAACCTATTTATTCTGTTTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACATAATACAGTCTCTAGAAGGTTAAACCTATTTATTCTGTTTAT  695

seq1  CTTGTTTCTAGGCTGTATGTACATCTGCATGACTTACACAGAAACCCCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCTAGGCTGTATGTACATCTGCATGACTTACACAGAAACCCCAT  745

seq1  TTTGTAAGGTTTTATTGTTTGATTCTGGGATAGTCTCTGCTGCCCAAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGGTTTTATTGTTTGATTCTGGGATAGTCTCTGCTGCCCAAGCT  795

seq1  GTTGATTCTCTCGACGCTCTGCCTTCCACGTGCTGGGGTTA-GGCATGAG  846
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTGATTCTCTCGACGCTCTGCCTTCCACGTGCTGGGGTTAGGGCATGAG  845

seq1  ACAACACACTTACCTTACTTTGCAAGTTTTTGACATTAAATC-TGATACA  895
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  ACAACACACTTACTTTACTTTGCAAGTTTTTGACATTAAATCTTGATACA  895

seq1  CAGAAAACATTCCACTTCTAGGCA-TTCAAGCAAGTAAAATATAATTCAC  944
      ||| |||||||||||||||||||| |||||||| ||||||||||||||||
seq2  CAGGAAACATTCCACTTCTAGGCATTTCAAGCAGGTAAAATATAATTCAC  945

seq1  AACCACTATGATGTGCATACCAGATGACAGAATCTTGTCTTTTAATAGCC  994
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACCACTATGATGTGCATACCAGATGACAGAATCTTGTCTTTT-ATAGCC  994

seq1  ATAAAATAGCATCTACCTGATGCCTTTTAATACTGCACTGAAAAATGAGG  1044
      || ||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  AT-AAATAGCATCTACTTGATGCCTTTTAATACTGCACTG-AAAATGAGG  1042

seq1  CTGGTACACT-GAGACAATGAAAAGATTGAG  1074
      ||||| |||| ||||| ||| | ||||||||
seq2  CTGGT-CACTGGAGACCATG-ATAGATTGAG  1071

seq1: chr1_152002863_152003472
seq2: B6Ng01-340M18.g_313_929 (reverse)

seq1  ----GAAGGAAGGAAGGAAGGAAGGAAGAGGCAGGAAGGAAGACTATGGG  46
          |||| ||| |||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAAAGAAAGGAAGGAAGGAAGAGGCAGGAAGGAAGACTATGGG  50

seq1  GACATTTTCTAAATTGAGGTCCCTTTGGT-AATTCAGATGTCTCTAGCTT  95
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GACATTTTCTAAATTGAGGTCCCTTTGGTAAATTCAGATGTCTCTAGCTT  100

seq1  ATGTG-AAATTTACATAAATCTAACACAGCAACCTTGGCCCTTGAATGTC  144
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAAATTTACATAAATCTAACACAGCAACCTTGGCCCTTGAATGTC  150

seq1  C-AAGGCCTTGAGTTGAACTAGCCAAAGTCTTAATATCTCCAAGCCTTGC  193
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCCTTGAGTTGAACTAGCCAAAGTCTTAATATCTCCAAGCCTTGC  200

seq1  TAGGACAGGGCTTATTATGCCTTAGAGTTGTAGAAGCCAGTTGATGGCTG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGGGCTTATTATGCCTTAGAGTTGTAGAAGCCAGTTGATGGCTG  250

seq1  TTGACACTTAACATGAGGCTTTTTGCTCTAGACATTAACAATAAATGACC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACTTAACATGAGGCTTTTTGCTCTAGACATTAACAATAAATGACC  300

seq1  TAAGCATTTAGCATGAATTGAAATTCTTGGCTTCCAGCAACAAAGCAGCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATTTAGCATGAATTGAAATTCTTGGCTTCCAGCAACAAAGCAGCA  350

seq1  GCCAGTAGCAGGAAGAAACAGAAGGTGTCCCTGCTAGTGATGTAGTTCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAGCAGGAAGAAACAGAAGGTGTCCCTGCTAGTGATGTAGTTCTT  400

seq1  GTGTTCATCTTATGACCATTAATACTAGTAGTGCTTTAAGAATATTTAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATCTTATGACCATTAATACTAGTAGTGCTTTAAGAATATTTAAT  450

seq1  ACTTAGCAAATATACTTGAGAAGAGTGTTGGGTCATTTTAAGCATTTCTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCAAATATACTTGAGAAGAGTGTTGGGTCATTTTAAGCATTTCTA  500

seq1  TACTGTTAAATAGGATTTACCAGTCCTGACATTTAATCTTGATGACCTGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTAAATAGGATTTACCAGTCCTGACATTTAATCTTGATGACCTGA  550

seq1  CATTCTACTAATCTTTAAATCCCATGCTAACTCTCTGCCAGTAGTATCAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTACTAATCTTTAAATCCCATGCTAACTCTCTGCCAGTAGTATCAA  600

seq1  AGGAAGCAAGAACAAAA  610
      |||||||||||||||||
seq2  AGGAAGCAAGAACAAAA  617