BAC Information

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BAC

Clone NameB6Ng01-341D01
Chromosome4 (Build37)
Map Location 30,831,520 - 30,976,696
singlet/doubletdoublet
Overlap geneLOC100040864
Upstream geneLOC665185, LOC619906
Downstream geneLOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341D01.bB6Ng01-341D01.g
ACCGA124652GA124653
length2021,041
definitionB6Ng01-341D01.b B6Ng01-341D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,831,520 - 30,831,722)(30,975,663 - 30,976,696)
sequence
cagggccaagaagtgggagtgggtgggtaggggagcagggcggagggagg
gtatagggaattttcgggacctatttgaaatgtatataaagaaaatatct
cataataaataaataaatttacaaaaattaaaaaaataaagctgagtttt
aaaggaaaaaaagaaattgctatctaacaggatggaaggagggagggagt
ga

gaattctcacattgtttccatgaaaggtgctatataagcacacagcaggg
tcattgttcccttttccctttcattttggtcaccctgactgatcttctct
gcattgccagcacagtggctttttccatcttaattttattcactgctgtg
gttactttcttttggggataggtgttaagtaaaagacagacatggatatc
acaagggaggtctaagcacctcccttccctcattactgatttctaacact
gaccatttaactgagacaggccttcattgcccagattccttcctggatga
gattcaatttcccgtgcactttcctgctttgtgcacagaactatcctcac
cccatcaaggcaaactacaaaattaaattaatttaacttgttcatctagg
tttttaatgtaatattttgacagatctgcataaactgaacttcctaaatt
ttgcataagggaataaaattgatggattcaaattcatttctgttggtgaa
atgcagagatttgtgatccatcagctgttctccctggtgcactatcaaga
cagcacaggctgccttcagttggcattaagtgcaaacaccattgcataaa
tcatcgtggctgcagatcagaaactagcaaaggacacttgtaaatggaga
tgtgaaatgaagtcaacgtttaaaaaaacaaaccgatgcaagaaaaaggg
ggagatagtagaaataatgttattttttaagccaagaagaagtgagattg
atgtagataatggaaaataattaaccattaaagacaaaacaataaaaata
tcgttgaagatagtctctgttgtatgtggctgttggctgtggatccatcc
agatgttggctttgtgtatactatttgtgtctgggtttgaattgtattca
tgcaattcttctcctttttttttcttttccctagaggattttctggtaaa
tttaattgaaatagactgtgcatagaatgcaagaaccagaacatatgaat
aggaaattgacaggaccctctttctaaaggagggaacagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_30831520_30831722
seq2: B6Ng01-341D01.b_53_254

seq1  CAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGCGGAGGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGCGGAGGGAGG  50

seq1  GTATAGGGAATTTTCGGGATAACATTTGAAATGTATATAAAGAAAATATC  100
      |||||||||||||||||||    |||||||||||||||||||||||||||
seq2  GTATAGGGAATTTTCGGGA-CCTATTTGAAATGTATATAAAGAAAATATC  99

seq1  TCATAATAAATAAATAAATTTACAAAAATTAAAAAAATAAAGCTGAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATAAATAAATAAATTTACAAAAATTAAAAAAATAAAGCTGAGTTT  149

seq1  TAAAGGAAAAAAAGAAATTGCTATCTAACAGGATGGAAGGAGGGAGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAAAAAAGAAATTGCTATCTAACAGGATGGAAGGAGGGAGGGAG  199

seq1  GGA  203
       ||
seq2  TGA  202


seq1: chr4_30975663_30976696
seq2: B6Ng01-341D01.g_65_1105 (reverse)

seq1  GACTG-TCCCTCCTTTAGA---AGGGCTCTGTC-ATTTCCTATTCATTAT  45
      ||||| |||||||||||||   ||||  ||||| |||||||||||| |||
seq2  GACTGTTCCCTCCTTTAGAAAGAGGGTCCTGTCAATTTCCTATTCA-TAT  49

seq1  TTTCTGGTTC-TGCATTCTATGCACAGTCTATTTCAATTAATTTTACCAG  94
       ||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  GTTCTGGTTCTTGCATTCTATGCACAGTCTATTTCAATTAAATTTACCAG  99

seq1  AAAATCCTCTA-GGAAAAGAAAAAAAAAGGAGAAGAATTTGCATGAATAC  143
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  AAAATCCTCTAGGGAAAAGAAAAAAAAAGGAGAAGAA-TTGCATGAATAC  148

seq1  -ATTC-AACCCAGACACAAATAGTATACACAAAGCCAACATCTGGATGGA  191
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAACCCAGACACAAATAGTATACACAAAGCCAACATCTGGATGGA  198

seq1  TCCACAGCCAACAGCCACATACAACAGAGACTATCTTCAACGATATTTTT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCCAACAGCCACATACAACAGAGACTATCTTCAACGATATTTTT  248

seq1  ATTGTTTTGTCTTTAATGGTTAATTATTTTCCATTATCTACATCAATCTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTGTCTTTAATGGTTAATTATTTTCCATTATCTACATCAATCTC  298

seq1  ACTTCTTCTTGGCTTAAAAAATAACATTATTTCTACTATCTCCCCCTTTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCTTGGCTTAAAAAATAACATTATTTCTACTATCTCCCCCTTTT  348

seq1  TCTTGCATCGGTTTGTTTTTTTAAACGTTGACTTCATTTCACATCTCCAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATCGGTTTGTTTTTTTAAACGTTGACTTCATTTCACATCTCCAT  398

seq1  TTACAAGTGTCCTTTGCTAGTTTCTGATCTGCAGCCACGATGATTTATGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGTGTCCTTTGCTAGTTTCTGATCTGCAGCCACGATGATTTATGC  448

seq1  AATGGTGTTTGCACTTAATGCCAACTGAAGGCAGCCTGTGCTGTCTTGAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTTTGCACTTAATGCCAACTGAAGGCAGCCTGTGCTGTCTTGAT  498

seq1  AGTGCACCAGGGAGAACAGCTGATGGATCACAAATCTCTGCATTTCACCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACCAGGGAGAACAGCTGATGGATCACAAATCTCTGCATTTCACCA  548

seq1  ACAGAAATGAATTTGAATCCATCAATTTTATTCCCTTATGCAAAATTTAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGAATTTGAATCCATCAATTTTATTCCCTTATGCAAAATTTAG  598

seq1  GAAGTTCAGTTTATGCAGATCTGTCAAAATATTACATTAAAAACCTAGAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCAGTTTATGCAGATCTGTCAAAATATTACATTAAAAACCTAGAT  648

seq1  GAACAAGTTAAATTAATTTAATTTTGTAGTTTGCCTTGATGGGGTGAGGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTTAAATTAATTTAATTTTGTAGTTTGCCTTGATGGGGTGAGGA  698

seq1  TAGTTCTGTGCACAAAGCAGGAAAGTGCACGGGAAATTGAATCTCATCCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGTGCACAAAGCAGGAAAGTGCACGGGAAATTGAATCTCATCCA  748

seq1  GGAAGGAATCTGGGCAATGAAGGCCTGTCTCAGTTAAATGGTCAGTGTTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAATCTGGGCAATGAAGGCCTGTCTCAGTTAAATGGTCAGTGTTA  798

seq1  GAAATCAGTAATGAGGGAAGGGAGGTGCTTAGACCTCCCTTGTGATATCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGTAATGAGGGAAGGGAGGTGCTTAGACCTCCCTTGTGATATCC  848

seq1  ATGTCTGTCTTTTACTTAACACCTATCCCCAAAAGAAAGTAACCACAGCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTCTTTTACTTAACACCTATCCCCAAAAGAAAGTAACCACAGCA  898

seq1  GTGAATAAAATTAAGATGGAAAAAGCCACTGTGCTGGCAATGCAGAGAAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAAAATTAAGATGGAAAAAGCCACTGTGCTGGCAATGCAGAGAAG  948

seq1  ATCAGTCAGGGTGACCAAAATGAAAGGGAAAAGGGAACAATGACCCTGCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAGGGTGACCAAAATGAAAGGGAAAAGGGAACAATGACCCTGCT  998

seq1  GTGTGCTTATATAGCACCTTTCATGGAAACAATGTGAGAATTC  1034
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTATATAGCACCTTTCATGGAAACAATGTGAGAATTC  1041


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