BAC Information

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BAC

Clone NameB6Ng01-341H08
Chromosome4 (Build37)
Map Location 37,990,737 - 38,140,341
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545600, LOC621458, LOC277771
Downstream geneLOC100039448, LOC665520, LOC100039487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341H08.bB6Ng01-341H08.g
ACCGA124834GA124835
length1,1211,158
definitionB6Ng01-341H08.b B6Ng01-341H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,139,246 - 38,140,341)(37,990,737 - 37,991,930)
sequence
gaattcatccccaacactgcttgggagaccaagaccctgagatgaaacca
aggggataaccaaatactactcttatgtaaaataaaacaaaaagcagcta
taaaattagtcctattgatattctgctatacttatagatcagggccttgc
tcatccaccatcagaagcctccttccacaacagataggaacaaatacaga
gacctagagccaaacaataggcacaaactgagaaatcttgagacaatcaa
actaaatgggatatccacaacaaatccttcctctcagagctctgggaact
cttttcaaagagggggtagaaataacttaataggtaggaggaatggagaa
caccaagaaactaatgctcacatgaacttaaggagactgaggcaacagtg
gtatttttgaagaaatgtttgataaattaccttggctcattatctatgat
gaaaaaagctatggcttaatctatgctaataacttctacaaaatgaggaa
gctagtttaattattaatcatgacagcttaggattttgtgagaatgggaa
taaaaattagtaacgacatgctaatttgaaggtcatttaaaaatattgga
atggaaattcagggcaggtatgagaacagaaaaaaatattaatggttagt
atcatcaaagacattgtttgggttaggtttctaatgttataaagagacac
catgactacagcaactataaaagggcaggtttgaattggaactggcatac
aggttcagagggtcagtatattatcaccaaggcatgaaacatggcagaat
ccaggcaggaatggtactggaggagctggaagttctacaacttcatccaa
aggaagccaggagcagactgttcccagggagctagaaggagggtcttaaa
gcacaccacaaagttacacacttcatccaacaagatgaaaaccactcaaa
gaaagccacaccacctaatagtgccactcattggccaagcatatttaaac
tactgtacacagggattctttaccttcaaatgtcatattagtaataccat
cctgaaactgagtttagattctattaaattttatcattatatatatatat
ataattattttcatgtcaaat

gaattccactcagatacgcagaactcgtgtaaagccataagcagcacagt
gcttctggaacctcagcattcctaatgtggaatgggaagcagaggagtcc
ccagaatctcaagaataaggtagtctgaggaagtgctaatcttcattaaa
taaataactattatggaatatgagagcatgacaaaataatggtatttgat
aatgataacacttccacctgaaatgaaggtcatttaaagtatagtaaaca
tgttaagagaggggtcacaatgtggaaaggcaatgaatagaagagacaag
aacaatactgatgaaaattttccaattaaaaattctctcatacctgatgc
ttcaagttacaatcatgaacagaatagttatatgtattcattttaatgtg
aagtcagaagaaaaaaacataggttctaaccctacagaaaacagcaatgt
tagtcgtaactgaagtaatacttaatattaatatttctgatatttttaat
attagttactgctacaaagccaacttgattgaaatcatgctaagttatct
gtcttttaataaatagagaaagcaagactttttagtaattcccaagggaa
aatttcagttgtaagcaactatttacatttaaataaggaaaatattattt
cttattcatttcttttacttatgcattgtttttattacattttaaagcac
ttcatttgcacgaactcatgttttctgtagctgttaacttttgatggcta
agaaatgataattcattttactatttttaaaagtcttatgattttacctt
ttttacaattttcataagtactaagtaaaaataaaagcagttattaaatt
agttgaattttaggagatcaccatcgcaaggttttctctgattttcttaa
attgaattaatcttaaattgaatttaatgtagaatcaggaatgtagacaa
acatttcagaaatcttgaaaatttgcagttggaccagagattgtggtaga
cgttctgtcaagagtgatttgtttaagtctagaaagtttagactgagatt
atgtcgcattatggctatgctccacaactgttagaatcggaaattcagat
tagccagctcgtgccaggacatagaatgagcctatgcattacgaatcaac
aagaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_38139246_38140341
seq2: B6Ng01-341H08.b_74_1165 (reverse)

seq1  ATTTGACATGAATATA--TATATATATATATATAATGAATTAAAATTTAA  48
      |||||||||||| |||  ||||||||||||||||||||  ||||||||||
seq2  ATTTGACATGAAAATAATTATATATATATATATAATGA--TAAAATTTAA  48

seq1  TAGAATTCCTTAAACTCAGTTTCAGGATGGTATTACTAATATGACATTTG  98
      ||||||    ||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAT---CTAAACTCAGTTTCAGGATGGTATTACTAATATGACATTTG  95

seq1  AAGGTAAAGAATCCCTGTGTACAGTAGTTTAAATATGCTTGGCCCAATGA  148
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGGTAAAGAATCCCTGTGTACAGTAGTTTAAATATGCTTGG-CCAATGA  144

seq1  GTGGCACTATTAGGTGGTGTGGCTTTCTTTGAGTGGTTTTCATCTTGTTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACTATTAGGTGGTGTGGCTTTCTTTGAGTGGTTTTCATCTTGTTG  194

seq1  GATGAAGTGTGTAACTTTGTGGTGTGCTTTAAGACCCTCCTTCTAGCTCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTGTGTAACTTTGTGGTGTGCTTTAAGACCCTCCTTCTAGCTCC  244

seq1  CTGGGAACAGTCTGCTCCTGGCTTCCTTTGGATGAAGTTGTAGAACTTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACAGTCTGCTCCTGGCTTCCTTTGGATGAAGTTGTAGAACTTCC  294

seq1  AGCTCCTCCAGTACCATTCCTGCCTGGATTCTGCCATGTTTCATGCCTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCCAGTACCATTCCTGCCTGGATTCTGCCATGTTTCATGCCTTG  344

seq1  GTGATAATATACTGACCCTCTGAACCTGTATGCCAGTTCCAATTCAAACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAATATACTGACCCTCTGAACCTGTATGCCAGTTCCAATTCAAACC  394

seq1  TGCCCTTTTATAGTTGCTGTAGTCATGGTGTCTCTTTATAACATTAGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTTATAGTTGCTGTAGTCATGGTGTCTCTTTATAACATTAGAAA  444

seq1  CCTAACCCAAACAATGTCTTTGATGATACTAACCATTAATATTTTTTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCCAAACAATGTCTTTGATGATACTAACCATTAATATTTTTTTCT  494

seq1  GTTCTCATACCTGCCCTGAATTTCCATTCCAATATTTTTAAATGACCTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATACCTGCCCTGAATTTCCATTCCAATATTTTTAAATGACCTTC  544

seq1  AAATTAGCATGTCGTTACTAATTTTTATTCCCATTCTCACAAAATCCTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCATGTCGTTACTAATTTTTATTCCCATTCTCACAAAATCCTAA  594

seq1  GCTGTCATGATTAATAATTAAACTAGCTTCCTCATTTTGTAGAAGTTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATGATTAATAATTAAACTAGCTTCCTCATTTTGTAGAAGTTATT  644

seq1  AGCATAGATTAAGCCATAGCTTTTTTCATCATAGATAATGAGCCAAGGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGATTAAGCCATAGCTTTTTTCATCATAGATAATGAGCCAAGGTA  694

seq1  ATTTATCAAACATTTCTTCAAAAATACCACTGTTGCCTCAGTCTCCTTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCAAACATTTCTTCAAAAATACCACTGTTGCCTCAGTCTCCTTAA  744

seq1  GTTCATGTGAGCATTAGTTTCTTGGTGTTCTCCATTCCTCCTACCTATTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTGAGCATTAGTTTCTTGGTGTTCTCCATTCCTCCTACCTATTA  794

seq1  AGTTATTTCTACCCCCTCTTTGAAAAGAGTTCCCAGAGCTCTGAGAGGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTCTACCCCCTCTTTGAAAAGAGTTCCCAGAGCTCTGAGAGGAA  844

seq1  GGATTTGTTGTGGATATCCCATTTAGTTTGATTGTCTCAAGATTTCTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGTTGTGGATATCCCATTTAGTTTGATTGTCTCAAGATTTCTCAG  894

seq1  TTTGTGCCTATTGTTTGGCTCTAGGTCTCTGTATTTGTTCCTATCTGTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCCTATTGTTTGGCTCTAGGTCTCTGTATTTGTTCCTATCTGTTG  944

seq1  TGGAAGGAGGCTTCTGATGGTGGATGAGCAAGGCCCTGATCTATAAGTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAGGCTTCTGATGGTGGATGAGCAAGGCCCTGATCTATAAGTAT  994

seq1  AGCAGAATATCAATAGGACTAATTTTATAGCTGCTTTTTGTTTTATTTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATATCAATAGGACTAATTTTATAGCTGCTTTTTGTTTTATTTTA  1044

seq1  CATAAGAGTAGTATTTGGTTATCCCCTTGGTTTCATCTCAGGGTCTTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAGTAGTATTTGGTTATCCCCTTGGTTTCATCTCAGGGTCTTG  1092


seq1: chr4_37990737_37991930
seq2: B6Ng01-341H08.g_66_1223

seq1  GAATTCCACTCAGATACGCAGAACTCGTGTAAAGCCATAAGCAGCACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCAGATACGCAGAACTCGTGTAAAGCCATAAGCAGCACAGT  50

seq1  GCTTCTGGAACCTCAGCATTCCTAATGTGGAATGGGAAGCAGAGGAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGAACCTCAGCATTCCTAATGTGGAATGGGAAGCAGAGGAGTCC  100

seq1  CCAGAATCTCAAGAATAAGGTAGTCTGAGGAAGTGCTAATCTTCATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCTCAAGAATAAGGTAGTCTGAGGAAGTGCTAATCTTCATTAAA  150

seq1  TAAATAACTATTATGGAATATGAGAGCATGACAAAATAATGGTATTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACTATTATGGAATATGAGAGCATGACAAAATAATGGTATTTGAT  200

seq1  AATGATAACACTTCCACCTGAAATGAAGGTCATTTAAAGTATAGTAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAACACTTCCACCTGAAATGAAGGTCATTTAAAGTATAGTAAACA  250

seq1  TGTTAAGAGAGGGGTCACAATGTGGAAAGGCAATGAATAGAAGAGACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGAGAGGGGTCACAATGTGGAAAGGCAATGAATAGAAGAGACAAG  300

seq1  AACAATACTGATGAAAATTTTCCAATTAAAAATTCTCTCATACCTGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACTGATGAAAATTTTCCAATTAAAAATTCTCTCATACCTGATGC  350

seq1  TTCAAGTTACAATCATGAACAGAATAGTTATATGTATTCATTTTAATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTACAATCATGAACAGAATAGTTATATGTATTCATTTTAATGTG  400

seq1  AAGTCAGAAGAAAAAAACATAGGTTCTAACCCTACAGAAAACAGCAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGAAGAAAAAAACATAGGTTCTAACCCTACAGAAAACAGCAATGT  450

seq1  TAGTCGTAACTGAAGTAATACTTAATATTAATATTTCTGATATTTTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGTAACTGAAGTAATACTTAATATTAATATTTCTGATATTTTTAAT  500

seq1  ATTAGTTACTGCTACAAAGCCAACTTGATTGAAATCATGCTAAGTTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTACTGCTACAAAGCCAACTTGATTGAAATCATGCTAAGTTATCT  550

seq1  GTCTTTTAATAAATAGAGAAAGCAAGACTTTTTAGTAATTCCCAAGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTAATAAATAGAGAAAGCAAGACTTTTTAGTAATTCCCAAGGGAA  600

seq1  AATTTCAGTTGTAAGCAACTATTTACATTTAAATAAGGAAAATATTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGTTGTAAGCAACTATTTACATTTAAATAAGGAAAATATTATTT  650

seq1  CTTATTCATTTCTTTTACTTATGCATTGTTTTTATTACATTTTAAAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCATTTCTTTTACTTATGCATTGTTTTTATTACATTTTAAAGCAC  700

seq1  TTCATTTGCACGAACTCATGTTTTCTGTAGCTGTTAACTTTTGATGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGCACGAACTCATGTTTTCTGTAGCTGTTAACTTTTGATGGCTA  750

seq1  AGAAATGATAATTCATTTTACTATTTTTAAAAGTCTTATGATTTTACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGATAATTCATTTTACTATTTTTAAAAGTCTTATGATTTTACCTT  800

seq1  TTTTACAATTTTCATAAGTACTAAGTAAAAATAAAAGCAGTTATTAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAATTTTCATAAGTACTAAGTAAAAATAAAAGCAGTTATTAAATT  850

seq1  AGTTGAATTTTAGGAGATCACCATCGCAAGGTTTTCTCTGATTTTCTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATTTTAGGAGATCACCATCGCAAGGTTTTCTCTGATTTTCTTAA  900

seq1  ATTGAATTAATCTTAAATTGAATTTAATGTAAGAATCAGGAATGTAGACA  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTGAATTAATCTTAAATTGAATTTAATGT-AGAATCAGGAATGTAGACA  949

seq1  AACATTTCAGAAAATCTTGGAAAATTTGCAGTTGGACCAAGAAGGATTGT  1000
      |||||||||| ||||||| ||||||||||||||||||| |||  ||||||
seq2  AACATTTCAG-AAATCTT-GAAAATTTGCAGTTGGACC-AGA--GATTGT  994

seq1  GGTTAGACGTTCTGTCAAAGAGGGTGAATTTGTTTAAAAGTCTAGAAAGT  1050
      || ||||||||||||||   || ||| ||||||||  |||||||||||||
seq2  GG-TAGACGTTCTGTCA---AGAGTG-ATTTGTTT--AAGTCTAGAAAGT  1037

seq1  TTAGACTGAAGATATGTTCCGCCATTAATGGCTATGCTCACAACCAAAAC  1100
      |||||||||   |||||  || |||| |||||||||||     ||| |||
seq2  TTAGACTGAGATTATGT--CG-CATT-ATGGCTATGCT-----CCACAAC  1078

seq1  TGTAAG-ATCAGAAAAATTCAGATGAAGGCAAGCTCCGTGCAAAAGGAGC  1149
      ||| || ||| |  |||||||||| |  || |||| |||||   |||| |
seq2  TGTTAGAATCGG--AAATTCAGATTA--GCCAGCT-CGTGC--CAGGA-C  1120

seq1  ATAGAATTGAAGCCCTAATGCCATTACAGGAGTCAACAAGAACAC  1194
      |||||||   ||||   ||| ||||||  || |||||||||||||
seq2  ATAGAAT--GAGCC--TATG-CATTAC--GAATCAACAAGAACAC  1158


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