BAC Information

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BAC

Clone NameB6Ng01-341K13
Chromosome4 (Build37)
Map Location 146,888,716 - 147,057,034
singlet/doubletdoublet
Overlap geneLOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671
Downstream geneLOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341K13.bB6Ng01-341K13.g
ACCGA124978GA124979
length4411,188
definitionB6Ng01-341K13.b B6Ng01-341K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,056,588 - 147,057,034)(146,888,716 - 146,889,455)
sequence
tctggaatttcattaagtttgtttctgccttcttgaattcctgtgcttgt
tccctctttatgacatttgtccacattgaatggtgttcagattatatttt
gacttttgtctcttgagtttgtttcataattcattttgtcatgagaattg
gtattggtttagtgatttaggttagggaaattttattaacattgtcaaat
tgctttagctacagcctctcaattttctttagctgtgtgtcatttaggtc
aggtgacagggatttccatatgaggtgttgtgaataaactttgagaatct
agggtggtgggaggaactaggttacagttacagtctaaatatatcattac
ttactttcatgactgtacattttcaagattcctggtatcattttgctttt
aatgtttatatatatatatgtgtgtgtgtgtgtgtgtgtgt
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgc
tttactgaaaagggcaatctgagaaggcatcagaaaattcatacaagaga
gaaaccttacaaatgtagtgaatgtgagaaatgctttactgacaaaggca
gtctgagaaggcatcagaaaattcataaaggagagaaaccttacaaatgc
agtgaatgtgacaaatgctttactgaaaaaggcaatctgagaattcatca
gaaaattcattcaggagagaaaccttacaaatgtcatgaatgtgataagt
gctttccccaaaaatcttatcttaatattcatccgagaattcataaagga
gagaaaccttataaatgtagtgaatgtaaaaaatgctttacccgaaaact
cgaaattagtattcatcagagaattcatacaggagagaaaccttacaaat
gcagtgaatgtgacaaatgctttactgaaaaaggcaatttgagaaggcat
cagaaaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaa
atgctttacccaaaaattccaacttagtattcatcagagaattcatacag
gagagaaaccttacaagtgtagtgaatgtgaaaaatgttttactgacaaa
ggcagtctgagaaggcatcagaaaattcatacaggagagaaactttcaaa
tgtagtgaaggtgacaaatgttttaatcacaaatcccatcttagtattta
tcagagaattcatacaggagaggaaccttacaaatagtttgtatgtgaca
aatacaatactcacaatgtcagtctgagaaatcatcagttatttcataca
gtagagaatctttataaatgaagtgaatgagacaattctttaccaagata
cagcatcttaaaattcactagagattacttacagaagaggaacttttcaa
atatatcgaaagtatgaattctttatttttgcctatttcctagaatgtaa
ctgtgatgctatagctagaaactacgcatgtattgtatgaagaaatatct
ttgatcatttagtcaggagaaaacatctagacttttagggaaagtatttt
ctgttgaagaaaaagttgcattgtttatcatggcaattcttggcatactc
aagctccaccatgagaaattaggtaaattatgagaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147056588_147057034
seq2: B6Ng01-341K13.b_46_492 (reverse)

seq1  ACACACACACACACACACACACATATATATATATAAACATTAAAAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACATATATATATATAAACATTAAAAGCAAA  50

seq1  ATGATACCAGGAATCTTGAAAATGTACAGTCATGAAAGTAAGTAATGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCAGGAATCTTGAAAATGTACAGTCATGAAAGTAAGTAATGATA  100

seq1  TATTTAGACTGTAACTGTAACCTAGTTCCTCCCACCACCCTAGATTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGACTGTAACTGTAACCTAGTTCCTCCCACCACCCTAGATTCTCA  150

seq1  AAGTTTATTCACAACACCTCATATGGAAATCCCTGTCACCTGACCTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATTCACAACACCTCATATGGAAATCCCTGTCACCTGACCTAAAT  200

seq1  GACACACAGCTAAAGAAAATTGAGAGGCTGTAGCTAAAGCAATTTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAGCTAAAGAAAATTGAGAGGCTGTAGCTAAAGCAATTTGACAA  250

seq1  TGTTAATAAAATTTCCCTAACCTAAATCACTAAACCAATACCAATTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATAAAATTTCCCTAACCTAAATCACTAAACCAATACCAATTCTCA  300

seq1  TGACAAAATGAATTATGAAACAAACTCAAGAGACAAAAGTCAAAATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAATGAATTATGAAACAAACTCAAGAGACAAAAGTCAAAATATAA  350

seq1  TCTGAACACCATTCAATGTGGACAAATGTCATAAAGAGGGAACAAGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACACCATTCAATGTGGACAAATGTCATAAAGAGGGAACAAGCACA  400

seq1  GGAATTCAAGAAGGCAGAAACAAACTTAATGAAATTCCAGAGAATTC  447
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAAGAAGGCAGAAACAAACTTAATGAAATTCCAGAGAATTC  447

seq1: chr4_146888716_146889455
seq2: B6Ng01-341K13.g_537_1260

seq1  AAATGCTTTACTGAAAAAGGCAATTTGAGAAGGCATCAGAAAATTCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTACTGAAAAAGGCAATTTGAGAAGGCATCAGAAAATTCATAC  50

seq1  AGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACCCAAA  100

seq1  AATTCCAACTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAACTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTTAC  150

seq1  AAGTGTAGTGAATGTGAAAAATGTTTTACTGACAAAGGCAGTCTGAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGTGAATGTGAAAAATGTTTTACTGACAAAGGCAGTCTGAGAAG  200

seq1  GCATCAGAAAATTCATACAGGAGAGAAACTTTCAAATGTAGTGAAGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGAAAATTCATACAGGAGAGAAACTTTCAAATGTAGTGAAGGTGA  250

seq1  CAAATGTTTTAATCACAAATCCCATCTTAGTATTTATCAGAGAATTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTTTAATCACAAATCCCATCTTAGTATTTATCAGAGAATTCATA  300

seq1  CAGGAGAGGAACCTTACAAATAGTTTGTATGTGACAAATACAATACTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGGAACCTTACAAATAGTTTGTATGTGACAAATACAATACTCAC  350

seq1  AATGTCAGTCTGAGAAATCATCAGTTATTTCATACAGTAGAGAATCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGTCTGAGAAATCATCAGTTATTTCATACAGTAGAGAATCTTTA  400

seq1  TAAATGAAGTGAATGAGACAATTCTTTACCAAGATACAGCATCTTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAGTGAATGAGACAATTCTTTACCAAGATACAGCATCTTAAAAT  450

seq1  TCACTAGAGAATACTTACAGAAGAGGAACTTTTCAAATATATCGAAGGTA  500
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  TCACTAGAGATTACTTACAGAAGAGGAACTTTTCAAATATATCGAAAGTA  500

seq1  TGAATTCTTTATTTTTGCCTATTTCCTAGAATGTAACTGTGAATGCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||| ||||||  
seq2  TGAATTCTTTATTTTTGCCTATTTCCTAGAATGTAACTGTG-ATGCTA--  547

seq1  AAGCTAGAAACTTAACGCATGTATTGTATGAAGAAATATCTTTGAATTCA  600
       |||||||||||  |||||||||||||||||||||||||||||||  |||
seq2  TAGCTAGAAACT--ACGCATGTATTGTATGAAGAAATATCTTTGA--TCA  593

seq1  TTTTAGTCA-GAGAAAACATCTAAGAACTTTTTAAGGGAAAGTA-TTTCT  648
       |||||||| |||||||||||||   ||||||  |||||||||| |||||
seq2  -TTTAGTCAGGAGAAAACATCTA--GACTTTT--AGGGAAAGTATTTTCT  638

seq1  GTTGAGAAAAAGGTGGCATATGTTTTATTCATGGCATATTCTTGGCAATA  698
      |||||  |||| || |||| |||||   |||||||| ||||||||| |||
seq2  GTTGAAGAAAAAGTTGCAT-TGTTT--ATCATGGCA-ATTCTTGGC-ATA  683

seq1  CTCAAGGCTCCACACTAGAG-AATTAGTATAATTATGAGAATC  740
      ||||| ||||||| |  ||| ||||||   |||||||||||||
seq2  CTCAA-GCTCCAC-CATGAGAAATTAGGTAAATTATGAGAATC  724