BAC Information

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BAC

Clone NameB6Ng01-341M22
Chromosome4 (Build37)
Map Location 124,615,466 - 124,760,080
singlet/doubletdoublet
Overlap gene9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1
Upstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8
Downstream gene2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2, Csf3r, Mrps15, 1810007P19Rik, LOC100039645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341M22.bB6Ng01-341M22.g
ACCGA125084GA125085
length977983
definitionB6Ng01-341M22.b B6Ng01-341M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,759,111 - 124,760,080)(124,615,466 - 124,616,448)
sequence
gaattcagtggacacctctctatacgtgcttctcttccttattttactgg
gttttaatttgccaattctaaatgtactttctaacacttacttgtgttca
gtgcttagcacgcccgggcacaggtgtgaaagacaggccgatttgcaggg
gtcagttggttccttctaccagctgggttctgtcgattacactcctccgg
cttcattcacagtgagtgctttacctgctaatccatcgcacctgacctcc
ttggcagttttccttattttaaatattgattaattttcatgtgtatgggt
gttttgcctacatacatgtctctgcacatgcttgcagtgccgctagaggt
caagagagggtgttggatcctctggaactaagttagaggttttgaatttt
tttttttttttttaagatttgttgattttatgtatgtatgtacactgtca
ctgtcttcagacacaccagatgagggcatcggatcccattacagatggtt
gtgacccacctgtggttgctggaaattgaactcaggacctctggaagaag
tcagtgttcttaactgctgagcccaaggttttaagttttaacagtttgat
tctcagcatcagggcagaaaactgaaaaccacagatggagcctttgagag
gtaggttaaaagttaaagagaaactggctgctcttccaggggtctcaggt
tcaattctcaggacccacacagtgactcacaaatttttgtgtcactacag
tgcaggggacccgactccctctctagcctcccagggtgccagggatacat
gagatgcagacagatatgcaaggcaaaacacccaaacacacaaaaattaa
cccttttaattaaaaagaacacggaaagagggttcatcagttaaaaatgc
ttggtgcttcttacagaggacctgccattaaattgccagccacccacatg
ctggttcacgaagtgtctataaccagt
gaattcttccttcattgttggctgaaggtgtcagcccacttccaggacta
ggagttcttgtttgtgtcccccaaagtctccctacctttcattattgcct
tgggactatttgaagaccaacagctggtcttctcctgaggtcggaaatga
cgcagccttgatgcaggccctcccttctggtaccctgactcccttttgtt
ttgtttattttttcccagaaaatggctcatgaccagcctctgctggttgt
gcaggaggccctgaggaagtgcttccctgtggtggaggaacagcagaacc
tgtggcagagcaccctgcaggactgctcgcccctcctgtcctctctcagt
aacctggctgagcagctgcaagccgcacagagtctgcgctttgaggatgt
gccagccctgcgtccctttccagacttacaggagcggttgaggcgcaagc
agctggaggctggtgacgttgttctggacaagctagctgagcggctgtaa
gaggctctgttgtccccctttgttgatggacagatcttaatgccgcatgg
catcccagcctcagtcagggggtcctacagaaatcgacaaaagcaagtca
ggagtaatcatgctggagctaagttgaatgtctgtgagttcgaggccagc
ctggactacattgtaagaccatgcatgtctttaaaacaaaacaaaacaac
ccaaatcaggccaggtgtttaatctcagcactaaggaggcatatacaagc
agatctctgagttcaaggccagtctggtctacatagagagttccaaggca
accagggctacacagaataaacccattctcaaataaattaagtagtaaac
aaccaataaataaaataaccccaaaccaacttaaataaatggaagaaatt
tacaaagccagaaatgaggacgtggcgagtagtgcagccctcttctgtcg
tagtccttggatgtactgcagtatagggagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_124759111_124760080
seq2: B6Ng01-341M22.b_50_1026 (reverse)

seq1  ACTGGTTATAGACACTTCGTGAACCAGCATGTGGGTGGCTGGCAATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTATAGACACTTCGTGAACCAGCATGTGGGTGGCTGGCAATTTAA  50

seq1  T-GCAGGTCCTCTGTAAGAAGCA-CAAGCATTTTTAACTGATGAACCCTC  98
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGCAGGTCCTCTGTAAGAAGCACCAAGCATTTTTAACTGATGAACCCTC  100

seq1  TTTCCGTGTTCTTTTTAATTAAAAGGGTTAA-TTTTGTGTGTTTGGGTGT  147
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTCCGTGTTCTTTTTAATTAAAAGGGTTAATTTTTGTGTGTTTGGGTGT  150

seq1  TTTGCC-TGCATATCTGTCTGCATCTCATGTATCCCTGGCACCCTGGGAG  196
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTGCATATCTGTCTGCATCTCATGTATCCCTGGCACCCTGGGAG  200

seq1  GCTAGAGAGGGAGTCGGGTCCCCTGCACTGTAGTGACACAAAA--TTGTG  244
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  GCTAGAGAGGGAGTCGGGTCCCCTGCACTGTAGTGACACAAAAATTTGTG  250

seq1  AGTCACTGTGTGGGTCCTGAGAATTGAACCTGAGACCCCTGGAAGAGCAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGTGTGGGTCCTGAGAATTGAACCTGAGACCCCTGGAAGAGCAG  300

seq1  CCAG-TTCTCTTTAACTTTTAACCTACCTCTCAAAGGCTCCATCTGTGGT  343
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCTCTTTAACTTTTAACCTACCTCTCAAAGGCTCCATCTGTGGT  350

seq1  TTTCAGTTTTCTGCCCTGATGCTGAGAATCAAACTGTTAAAACTTAAAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTTTCTGCCCTGATGCTGAGAATCAAACTGTTAAAACTTAAAAC  400

seq1  CTTGGGCTCAGCAGTTAAGAACACTGACTTCTTCCAGAGGTCCTGAGTTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTCAGCAGTTAAGAACACTGACTTCTTCCAGAGGTCCTGAGTTC  450

seq1  AATTTCCAGCAACCACAGGTGGGTCACAACCATCTGTAATGGGATCCGAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAGCAACCACAGGTGGGTCACAACCATCTGTAATGGGATCCGAT  500

seq1  GCCCTCATCTGGTGTGTCTGAAGACAGTGACAGTGTACATACATACATAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCATCTGGTGTGTCTGAAGACAGTGACAGTGTACATACATACATAA  550

seq1  AATCAACAAATCTTAAAAAAAAAAAAAAAAATTCAAAACCTCTAACTTAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACAAATCTTAAAAAAAAAAAAAAAAATTCAAAACCTCTAACTTAG  600

seq1  TTCCAGAGGATCCAACACCCTCTCTTGACCTCTAGCGGCACTGCAAGCAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGGATCCAACACCCTCTCTTGACCTCTAGCGGCACTGCAAGCAT  650

seq1  GTGCAGAGACATGTATGTAGGCAAAACACCCATACACATGAAAATTAATC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGACATGTATGTAGGCAAAACACCCATACACATGAAAATTAATC  700

seq1  AATATTTAAAATAAGGAAAACTGCCAAGGAGGTCAGGTGCGATGGATTAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAAAATAAGGAAAACTGCCAAGGAGGTCAGGTGCGATGGATTAG  750

seq1  CAGGTAAAGCACTCACTGTGAATGAAGCCGGAGGAGTGTAATCGACAGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAGCACTCACTGTGAATGAAGCCGGAGGAGTGTAATCGACAGAA  800

seq1  CCCAGCTGGTAGAAGGAACCAACTGACCCCTGCAAATCGGCCTGTCTTTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGGTAGAAGGAACCAACTGACCCCTGCAAATCGGCCTGTCTTTC  850

seq1  ACACCTGTGCCCGGGCGTGCTAAGCACTGAACACAAGTAAGTGTTAGAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTGCCCGGGCGTGCTAAGCACTGAACACAAGTAAGTGTTAGAAA  900

seq1  GTACATTTAGAATTGGCAAATTAAAACCCAGTAAAATAAGGAAGAGAAGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTAGAATTGGCAAATTAAAACCCAGTAAAATAAGGAAGAGAAGC  950

seq1  ACGTATAGAGAGGTGTCCACTGAATTC  970
      |||||||||||||||||||||||||||
seq2  ACGTATAGAGAGGTGTCCACTGAATTC  977

seq1: chr4_124615466_124616448
seq2: B6Ng01-341M22.g_68_1050

seq1  GAATTCTTCCTTCATTGTTGGCTGAAGGTGTCAGCCCACTTCCAGGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTCATTGTTGGCTGAAGGTGTCAGCCCACTTCCAGGACTA  50

seq1  GGAGTTCTTGTTTGTGTCCCCCAAAGTCTCCCTACCTTTCATTATTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCTTGTTTGTGTCCCCCAAAGTCTCCCTACCTTTCATTATTGCCT  100

seq1  TGGGACTATTTGAAGACCAACAGCTGGTCTTCTCCTGAGGTCGGAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTATTTGAAGACCAACAGCTGGTCTTCTCCTGAGGTCGGAAATGA  150

seq1  CGCAGCCTTGATGCAGGCCCTCCCTTCTGGTACCCTGACTCCCTTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCCTTGATGCAGGCCCTCCCTTCTGGTACCCTGACTCCCTTTTGTT  200

seq1  TTGTTTATTTTTTCCCAGAAAATGGCTCATGACCAGCCTCTGCTGGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTTTTTCCCAGAAAATGGCTCATGACCAGCCTCTGCTGGTTGT  250

seq1  GCAGGAGGCCCTGAGGAAGTGCTTCCCTGTGGTGGAGGAACAGCAGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGCCCTGAGGAAGTGCTTCCCTGTGGTGGAGGAACAGCAGAACC  300

seq1  TGTGGCAGAGCACCCTGCAGGACTGCTCGCCCCTCCTGTCCTCTCTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGAGCACCCTGCAGGACTGCTCGCCCCTCCTGTCCTCTCTCAGT  350

seq1  AACCTGGCTGAGCAGCTGCAAGCCGCACAGAGTCTGCGCTTTGAGGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGCTGAGCAGCTGCAAGCCGCACAGAGTCTGCGCTTTGAGGATGT  400

seq1  GCCAGCCCTGCGTCCCTTTCCAGACTTACAGGAGCGGTTGAGGCGCAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCCTGCGTCCCTTTCCAGACTTACAGGAGCGGTTGAGGCGCAAGC  450

seq1  AGCTGGAGGCTGGTGACGTTGTTCTGGACAAGCTAGCTGAGCGGCTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGGCTGGTGACGTTGTTCTGGACAAGCTAGCTGAGCGGCTGTAA  500

seq1  GAGGCTCTGTTGTCCCCCTTTGTTGATGGACAGATCTTAATGCCGCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCTGTTGTCCCCCTTTGTTGATGGACAGATCTTAATGCCGCATGG  550

seq1  CATCCCAGCCTCAGTCAGGGGGTCCTACAGAAATCGACAAAAGCAAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGCCTCAGTCAGGGGGTCCTACAGAAATCGACAAAAGCAAGTCA  600

seq1  GGAGTAATCATGCTGGAGCTAAGTTGAATGTCTGTGAGTTCGAGGCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAATCATGCTGGAGCTAAGTTGAATGTCTGTGAGTTCGAGGCCAGC  650

seq1  CTGGACTACATTGTAAGACCATGCATGTCTTTAAAACAAAACAAAACAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTACATTGTAAGACCATGCATGTCTTTAAAACAAAACAAAACAAC  700

seq1  CCAAATCAGGCCAGGTGTTTAATCTCAGCACTAAGGAGGCATATACAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCAGGCCAGGTGTTTAATCTCAGCACTAAGGAGGCATATACAAGC  750

seq1  AGATCTCTGAGTTCAAGGCCAGTCTGGTCTACATAGAGAGTTCCAAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTGAGTTCAAGGCCAGTCTGGTCTACATAGAGAGTTCCAAGGCA  800

seq1  ACCAGGGCTACACAG-ATAAACCCAGTCTCAAAATAAATAAGTAAGTAAA  849
      ||||||||||||||| ||||||||| |||||||  || ||||| ||||||
seq2  ACCAGGGCTACACAGAATAAACCCATTCTCAAATAAATTAAGT-AGTAAA  849

seq1  CAAACAAATAAATAAAAATAACCCCAAACCAAC-TAAATAAATGGAAGAA  898
      | ||| ||||||| ||||||||||||||||||| ||||||||||||||||
seq2  C-AACCAATAAAT-AAAATAACCCCAAACCAACTTAAATAAATGGAAGAA  897

seq1  A-TTACAAAAGCAGAAAAGAAGAGGGTGGCGAGGAGTGCAGCCCTCTTCT  947
      | |||||||  |||||| || ||  |||||||| ||||||||||||||||
seq2  ATTTACAAAGCCAGAAATGAGGA-CGTGGCGAGTAGTGCAGCCCTCTTCT  946

seq1  GTCGTTGTCCTTGG-TGTACTGCAGTTCAGGGAGAGC  983
      ||||| |||||||| |||||||||||  |||||||||
seq2  GTCGTAGTCCTTGGATGTACTGCAGTATAGGGAGAGC  983