BAC Information

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BAC

Clone NameB6Ng01-342A18
Chromosome4 (Build37)
Map Location 145,587,343 - 145,588,545
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342A18.bB6Ng01-342A18.g
ACCGA125248GA125249
length1,1291,183
definitionB6Ng01-342A18.b B6Ng01-342A18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggaactcattataatcatgaaaagagttgacttcctagcaaca
gtctaatgagacttgggtaaatctcgagtctcctttcccccacttatgct
gacatgcatgggtgtacatagagtgttacagggaacaatcaggaaaccat
ttatcaacaaacagtgcagtatgtattgtaattttgttctagttttcttt
ctctctttctgtctgtctttctttctgtctttctttctttctttctttct
ttctttctttctttctttctgtctctctctctctttctttctttctttct
ttctttctttctttctttctttctgtctctctctctttctttctttcttt
ctttctttcttcctttccttactttttttttggcaaagatcaggacagtt
ttccaaaggagtttctctttattgcctcatccttcaagcagtaaataata
ttgtcccttgacctaacatcattttaattcaccattttctttgattgagg
catccacctcctctactttttctttaagtctgataatctgtctcccacag
gttctctatgtatcatttttattgcctcactgcattttctcttcaggatt
tttttttgtgtggcatttctaagcacctattgaacataattttaatattt
tatattgtccttatttccttcaggcatctggtgttattttcttgaccaag
attcattttgttcctgtctgagtggattcacaggtttacaaactttaatg
tccttgatcatgactgtgggttttccattctttgtcttggatatcacata
aattgtgctccttataagatacctctatggtttgtggtttgagccaagga
cattttatctacgtttttgtttgttttgggtatctgtctgagcatcagaa
ttcaaagggactgctttattttgtgcatttatagcccagagggctacacg
cacaatatgagaagttagacaggatccattgatctgagggttcagaccca
gtgcagtgtctactacatcagctctggtctagtctgcagcactttgtgag
agctttgcaaagtagtctgggaagtttgtgtgcaggcagctgcacagagt
tggaggatgtctgatgggagtgtggattc
gaattctctgatgaatactaagatgggattgttgggtaaagcatttgtca
cattcactgcatttgtaaggtttctctccagtatgaattctctgatgaac
tctcagatagcctttgtcagtaaagcatttgtcacactcactgcatttgt
aaggtttctctccagtatgaattctctgatgaactctcagatagcctttg
tcagtaaagcatttgtcacactcactgcatttgtaaggtttctttcctgt
atgaattctctgatgctttcccagaatgaatttgtcagtaaagcatttgt
cgcattcactacatttgtaaggtttctctcctgaatgaattctacgatga
aaactaagatgggatggttgggtaaagcatttgtcacactcactgcattt
gtaaggtttctctccagtatgaattctctgatgaactctcagatagcctt
tgtcagtaaagcatttgtcacactcactgcatttgtaaggtttctctcca
gtatgaattctctgatgaactctcagatagcctttgtcagtaaaacattt
gtcacactcactgcatttgtaaggtttctctcccgtatgaattctctgat
gctttctcagagtgcatttgtcagtaaagcatttgtcgcattcactacat
ttgtaaggtttctctcctgaatgaattgtatgatgaatactaagatggga
aggttgggtaaagcatttgtcactttcactatatttgtaagatttctttc
ctggctttctctgctgactttgaagactgtcactctgagtaaagcatttg
tcaaattcaccacaagtgtaagtgttcatttcactattgttttgtctcac
aatgggtttatgtttagaaaccaaaacctcatcaagatttttattctgtt
gtgttctttcttctctatgtgggttccttgattgagactaatgatagaag
acccctttaaacagtttacacagtctttatatgtgcaaacttctttagtg
gttcccagttttatgtcttttagtttgagattggaatgttggcatctctt
tgttagtgtaataagtggtactttcgaggatcatgattccacatacttag
ctcaatacatttagaagactctttcgaattggccattgctcatgacatgc
gtatgtctgtatcaggaggactcattttttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145587343_145588545
seq2: B6Ng01-342A18.b_47_1175 (reverse)

seq1  GAATCCCACACTCCCCATCAGGAACCACTCCTCCAACTCTGTTGCAGGCT  50
      |||| ||||||| ||||||||  |    ||||||||||||| |||| |||
seq2  GAAT-CCACACT-CCCATCAGACA----TCCTCCAACTCTG-TGCA-GCT  42

seq1  GCCTTCCACAC-AACTTCCCAGGACCTACTCTGCAAAGCTTCTTCACAAA  99
      ||| | ||||| ||||||||||   ||||| |||||||||   |||||||
seq2  GCC-TGCACACAAACTTCCCAG--ACTACTTTGCAAAGCT--CTCACAAA  87

seq1  GTTGCTGCCAGACTAGACCAGAGCTGGATGTAGTAGGACACTGCACCTGG  149
      | ||||| ||||||||||||||||| ||||||||| ||||||||| ||||
seq2  G-TGCTG-CAGACTAGACCAGAGCT-GATGTAGTA-GACACTGCA-CTGG  132

seq1  GTTCTGAACCCTTCAGATTCAATGGATCCTGTCTAACTTCTCATATTGTG  199
      | ||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  G-TCTGAACCC-TCAGA-TCAATGGATCCTGTCTAACTTCTCATATTGTG  179

seq1  CGTGTAGCCCTCTGGGCTATAAATGCACAAAATTAAGCAGTCCCTTTGAA  249
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CGTGTAGCCCTCTGGGCTATAAATGCACAAAATAAAGCAGTCCCTTTGAA  229

seq1  TTCTGATGCTCAGAACAGATACCCAAAACAAACAAAAACGTAGATAAAAT  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGCTCAG-ACAGATACCCAAAACAAACAAAAACGTAGATAAAAT  278

seq1  GTCCTTGGCTCAAACCACAAACCATAGAGGTATCTTATAAGGAGCACAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGGCTCAAACCACAAACCATAGAGGTATCTTATAAGGAGCACAAT  328

seq1  TTATGTGATATCCAAGACAAAGAATGGAAAACCCACAGTCATGATCAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGATATCCAAGACAAAGAATGGAAAACCCACAGTCATGATCAAGG  378

seq1  ACATTAAAGTTTGTAAACCTGTGAATCCACTCAGACAGGAACAAAATGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAGTTTGTAAACCTGTGAATCCACTCAGACAGGAACAAAATGAA  428

seq1  TCTTGGTCAAGAAAATAACACCAGATGCCTGAAGGAAATAAGGACAATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCAAGAAAATAACACCAGATGCCTGAAGGAAATAAGGACAATAT  478

seq1  AAAATATTAAAATTATGTTCAATAGGTGCTTAGAAATGCCACACAAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTAAAATTATGTTCAATAGGTGCTTAGAAATGCCACACAAAAAA  528

seq1  AAATCCTGAAGAGAAAATGCAGTGAGGCAAATAAAAATGATACATAGAGA  599
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAATCCTGAAGAGAAAATGCAGTGAGGC-AATAAAAATGATACATAGAGA  577

seq1  ACCTGTGGGAGACAGATTATCAGACTTAAAGAAAAAGTAGAGGAGGTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGGGAGACAGATTATCAGACTTAAAGAAAAAGTAGAGGAGGTGGA  627

seq1  TGCCTCAATCAAAGAAAATGGTGAATTAAAATGATGTTAGGTCAAGGGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAATCAAAGAAAATGGTGAATTAAAATGATGTTAGGTCAAGGGAC  677

seq1  AATATTATTTACTGCTTGAAGGATGAGGCAATAAAGAGAAACTCCTTTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTTACTGCTTGAAGGATGAGGCAATAAAGAGAAACTCCTTTGG  727

seq1  AAAACTGTCCTGATCTTTGTCAAAAAAAAAGTAAGGAAAGGAAGAAAGAA  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAACTGTCCTGATCTTTGCCAAAAAAAAAGTAAGGAAAGGAAGAAAGAA  777

seq1  AGAAAGAAAGAGAGAGAGACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  849
      ||||                ||||||||||||||| ||| ||| ||||||
seq2  AGAA----------------AGAAAGAAAGAAAGAGAGAGAGACAGAAAG  811

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCGAGAGAGAGACAG  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGACAG  861

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGAAAGAA  911

seq1  AGAAAGAAAGAAAGAAAGACAGACAGTAAGAAAGACAGACAGACAGAAAG  999
                                          ||||||||||||||
seq2  ------------------------------------AGACAGACAGAAAG  925

seq1  AGAGAAAGAAAACTAGAACAAAATTACAATACATACTGCACTGTTTGTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAAAACTAGAACAAAATTACAATACATACTGCACTGTTTGTTG  975

seq1  ATAAATGGTTTCCTGATTGTTCCCTGTAACACTCTATGTACACCCATGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGTTTCCTGATTGTTCCCTGTAACACTCTATGTACACCCATGCA  1025

seq1  TGTCAGCATAAGTGGGGGAAAGGAGACTCGAGATTTACCCAAGTCTCATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCATAAGTGGGGGAAAGGAGACTCGAGATTTACCCAAGTCTCATT  1075

seq1  AGACTGTTGCTAGGAAGTCAACTCTTTTCATGATTATAATGAGTTCCAGA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTGCTAGGAAGTCAACTCTTTTCATGATTATAATGAGTTCCAGA  1125

seq1  ATTC  1203
      ||||
seq2  ATTC  1129