BAC Information

Click to search

BAC

Clone NameB6Ng01-342G20
Chromosome4 (Build37)
Map Location 76,520,081 - 76,614,473
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667845, Ptprd, LOC667858, LOC667862
Downstream geneLOC100039974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342G20.bB6Ng01-342G20.g
ACCGA125516GA125517
length1,0521,121
definitionB6Ng01-342G20.b B6Ng01-342G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,613,941 - 76,614,473)(76,520,081 - 76,521,193)
sequence
gaattcaggcgtttcgaggactgaaatatgtcatataataaaaatgaatc
agtataataaaatattaggatctaatgatgataagcaatttcagaaccct
taagcttcataccatgaaaatgattgaataatgtaaccgtacaaggatac
tccttcaattgtcacattccatcttattttactgtagaaaaatatacata
gcataaaattcaccatttaacccctttaatgctgcagtttactgacactg
actgcttcagcacctctgggccatcgttctcatggctgagctccaaaact
ctgtccatgcccagactgaattctgcactgattgaagagttacccttctc
tcttgtcattggcaaccaccacttgcttcttgtttgtgaatttggttgct
ctggagaccttagacaaatagcatgtataacattagtcctttctttttcc
tttttttaaaaaattagatattttctttatatacatttcaaatgctatcc
cgaaagttccctatacccttcccctgccctgctctcctacccacccactc
ctgcttcttggccctgccattcccctgtactggggcatataaagtttgca
ataccaaggggcctctcttcccaatgatgaccgactaggccatcttctga
tacatatgcagctagagacatgagctctgggggtactggttaattcatat
agttgttccacctatagggttgcagacccctttagctccttggatgcttt
ctttagcttttccatagtgttccatcttatagatgactgtgagcatccaa
tcacaaaagaagtcattagatacacactcactaataagtggatatgagcc
cagaaacatagaacacccaagatacaatttacaaaacacaagaaaatcaa
gaagagggaagacttgaggggatacctcattcctccttagaaaagggaaa
aatagccatgaaaggagttacagagaacaaagtttggagctagacgaaag
gatgaactatccagagactacccacccagggatcatctgtaatcagtcac
aa

gaattctagaaataaagctttctagaattcaatgaaaatgaaagcactac
ataccaaaacttacaggacacaatgaaagctgtgctaagagaaaatagtt
catagtgctaggtgcctacataaagaagttagaaagttctcatatcagca
attacaggtacatctgaaagctctaggaaaagaagcagcaaacacaccca
ccccacgagcagtagaaggcagaaagtaaccaaactcagggctgaaatca
atcaatcataaacaaagaaaacaatacaaaaaattaacaaaaccaagatt
tagttctttgagaagatgacaaagatagacaaatccttagccaaactaac
ttaaaggcaacaggagagtattaaaattaacaaaatcaaaaatgaaaaga
aaatataacaaaagacattgaggaaacccaaagtgccatttgattgtatt
tcagaagactatattccagaaaattggaaaacccatatgaaatggacaat
tttcttgaatcaagatcaggtataatgaatgcatttaatatgatttcaca
tacctatattttatttaatgattatggaatcaagtttgttcgaacctatc
taaagattctatgtatgtgtgtatatgtgtagatacaaattatgtatgtt
tgatatgtaaaaatacaaaattgttcttagcaaaattttaataaatagtt
agctggaattaaacatggtcaccatgtcaccataatacatatctatggaa
ctaatttactatatatacagcgaaacacacacatgcatgtatgttatttt
ttatcagccatttgatcaacatccccacttttcttcaattaacagctctc
aaaacccatctgggttttatcaaataatttttataagattgcacatgaaa
taatttgttacgtgtctgactcatcttagttactacatgtttcaagttta
tctacattgctacaaattactgggttatcttctctaaaaattggatacta
ttcacacattgtgtgtgttatgtttatggatgtggacaatgtatgttaca
ttttcattgactatgccttcatggggttcaaaggctgttttatttcttga
cgttgtacatggactatcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76613941_76614473
seq2: B6Ng01-342G20.b_46_578 (reverse)

seq1  AGCAGGGCAGGGGAAGGGTATAGGGAACTTTCGGGATAGCATTTGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCAGGGGAAGGGTATAGGGAACTTTCGGGATAGCATTTGAAATG  50

seq1  TATATAAAGAAAATATCTAATTTTTTAAAAAAAGGAAAAAGAAAGGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAGAAAATATCTAATTTTTTAAAAAAAGGAAAAAGAAAGGACTA  100

seq1  ATGTTATACATGCTATTTGTCTAAGGTCTCCAGAGCAACCAAATTCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATACATGCTATTTGTCTAAGGTCTCCAGAGCAACCAAATTCACAA  150

seq1  ACAAGAAGCAAGTGGTGGTTGCCAATGACAAGAGAGAAGGGTAACTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGCAAGTGGTGGTTGCCAATGACAAGAGAGAAGGGTAACTCTTC  200

seq1  AATCAGTGCAGAATTCAGTCTGGGCATGGACAGAGTTTTGGAGCTCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTGCAGAATTCAGTCTGGGCATGGACAGAGTTTTGGAGCTCAGCC  250

seq1  ATGAGAACGATGGCCCAGAGGTGCTGAAGCAGTCAGTGTCAGTAAACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACGATGGCCCAGAGGTGCTGAAGCAGTCAGTGTCAGTAAACTGC  300

seq1  AGCATTAAAGGGGTTAAATGGTGAATTTTATGCTATGTATATTTTTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAAAGGGGTTAAATGGTGAATTTTATGCTATGTATATTTTTCTAC  350

seq1  AGTAAAATAAGATGGAATGTGACAATTGAAGGAGTATCCTTGTACGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATAAGATGGAATGTGACAATTGAAGGAGTATCCTTGTACGGTTA  400

seq1  CATTATTCAATCATTTTCATGGTATGAAGCTTAAGGGTTCTGAAATTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCAATCATTTTCATGGTATGAAGCTTAAGGGTTCTGAAATTGCT  450

seq1  TATCATCATTAGATCCTAATATTTTATTATACTGATTCATTTTTATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCATTAGATCCTAATATTTTATTATACTGATTCATTTTTATTATA  500

seq1  TGACATATTTCAGTCCTCGAAACGCCTGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  TGACATATTTCAGTCCTCGAAACGCCTGAATTC  533


seq1: chr4_76520081_76521193
seq2: B6Ng01-342G20.g_73_1184

seq1  AAATAAAGCTTTCTAGAATTCAATGAAAATGAAAGCACTACATACCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCTTTCTAGAATTCAATGAAAATGAAAGCACTACATACCAAAA  50

seq1  CTTACAGGACACAATGAAAGCTGTGCTAAGAGAAAATAGTTCATAGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGGACACAATGAAAGCTGTGCTAAGAGAAAATAGTTCATAGTGCT  100

seq1  AGGTGCCTACATAAAGAAGTTAGAAAGTTCTCATATCAGCAATTACAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCTACATAAAGAAGTTAGAAAGTTCTCATATCAGCAATTACAGGT  150

seq1  ACATCTGAAAGCTCTAGGAAAAGAAGCAGCAAACACACCCACCCCACGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAAAGCTCTAGGAAAAGAAGCAGCAAACACACCCACCCCACGAG  200

seq1  CAGTAGAAGGCAGAAAGTAACCAAACTCAGGGCTGAAATCAATCAATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAAGGCAGAAAGTAACCAAACTCAGGGCTGAAATCAATCAATCAT  250

seq1  AAACAAAGAAAACAATACAAAAAATTAACAAAACCAAGATTTAGTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAAAACAATACAAAAAATTAACAAAACCAAGATTTAGTTCTTT  300

seq1  GAGAAGATGACAAAGATAGACAAATCCTTAGCCAAACTAACTTAAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATGACAAAGATAGACAAATCCTTAGCCAAACTAACTTAAAGGCA  350

seq1  ACAGGAGAGTATTAAAATTAACAAAATCAAAAATGAAAAGAAAATATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAGTATTAAAATTAACAAAATCAAAAATGAAAAGAAAATATAAC  400

seq1  AAAAGACATTGAGGAAACCCAAAGTGCCATTTGATTGTATTTCAGAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACATTGAGGAAACCCAAAGTGCCATTTGATTGTATTTCAGAAGAC  450

seq1  TATATTCCAGAAAATTGGAAAACCCATATGAAATGGACAATTTTCTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCAGAAAATTGGAAAACCCATATGAAATGGACAATTTTCTTGAA  500

seq1  TCAAGATCAGGTATAATGAATGCATTTAATATGATTTCACATACCTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCAGGTATAATGAATGCATTTAATATGATTTCACATACCTATAT  550

seq1  TTTATTTAATGATTATGGAATCAAGTTTGTTCGAACCTATCTAAAGATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAATGATTATGGAATCAAGTTTGTTCGAACCTATCTAAAGATTC  600

seq1  TATGTATGTGTGTATATGTGTAGATACAAATTATGTATGTTTGATATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTGTGTATATGTGTAGATACAAATTATGTATGTTTGATATGTA  650

seq1  AAAATACAAAATTGTTCTTAGCAAAATTTTAATAAATAGTTAGCTGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAAATTGTTCTTAGCAAAATTTTAATAAATAGTTAGCTGGAAT  700

seq1  TAAACATGGTCACCATGTCACCATAATACATATCTATGGAACTAATTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGGTCACCATGTCACCATAATACATATCTATGGAACTAATTTAC  750

seq1  TATATATACAGCGAAACACACACATGCATGTATGTTATTTTTTATCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACAGCGAAACACACACATGCATGTATGTTATTTTTTATCAGCC  800

seq1  ATTTGATCAACATCCCCACTTTTCTTCAATTAACAGCTCTCAAAACCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCAACATCCCCACTTTTCTTCAATTAACAGCTCTCAAAACCCAT  850

seq1  CTGGGTTTTATCAAATAATTTTTATAAGATTGCACATGAAATAATTTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTTATCAAATAATTTTTATAAGATTGCACATGAAATAATTTGTT  900

seq1  ACGTGTCTGACTCATCTTAGTTACTACATGTTTCAAGTTTATCTACATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTCTGACTCATCTTAGTTACTACATGTTTCAAGTTTATCTACATTG  950

seq1  CTACAAATTACTGGGTTATCTTCTCTTAAAAATTGGATACTATTCACACA  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTACAAATTACTGGGTTATCTTCTC-TAAAAATTGGATACTATTCACACA  999

seq1  TTGTGTGTG-TATGTTTATGGATGTGGAC-ATGTATGTTACATTTTCATG  1048
      ||||||||| ||||||||||||||||||| ||||||||||||||||||| 
seq2  TTGTGTGTGTTATGTTTATGGATGTGGACAATGTATGTTACATTTTCATT  1049

seq1  GACTTATGCCTTCATGGGG-TCAAAGGCTGTTTTATTTCTTGACCTTTGT  1097
      ||| ||||||||||||||| |||||||||||||||||||||||| ||   
seq2  GAC-TATGCCTTCATGGGGTTCAAAGGCTGTTTTATTTCTTGACGTT--G  1096

seq1  TACATGGACTATCATG  1113
      ||||||||||||||||
seq2  TACATGGACTATCATG  1112


| Home | SequenceCutter | Blast | Download |