BAC Information

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BAC

Clone NameB6Ng01-342L11
Chromosome4 (Build37)
Map Location 140,526,296 - 140,526,464
singlet/doubletsinglet
Overlap geneSdhb
Upstream geneIgsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2
Downstream geneAtp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342L11.bB6Ng01-342L11.g
ACCGA125710GA125711
length1421,170
definitionB6Ng01-342L11.b B6Ng01-342L11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
atttgggtggtcagtagccactttcctgattgggcctggggtagcaaggg
gaggtttaggattacgcagtctttctttgagtttagccaatgcattttaa
aattaactggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
tgcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctaagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgagaagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatta
aagggtggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacagggctccca
tggagagctagagaaagtacccaaggagctaaagggatcttgcaccctat
agtggatcacattatgactacagtaccccgagctcttgactcttagctgc
atatgattcaaagaatgctagtccgccatcacttggaagagagccaattg
acactaccaaacctttaaatgcctagaacaggacgtctagttcaaaggga
tgggcgggataaggggactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_140526296_140526464
seq2: B6Ng01-342L11.b_81_192 (reverse)

seq1  CATACACACATACGCACACACACAGGCACACACACAAAC---TTATTTAC  47
          |||||| || ||||||||||  |||||||||||||   ||| ||  
seq2  ----CACACACACACACACACACA--CACACACACAAACCAGTTAATTTT  44

seq1  AACCTGCCTTCTTGGCTCAGTTGCTGAGTGCTTCTAATCTCCCTCAGCCA  97
      ||  |||    ||||                  |||| ||  |  ||  |
seq2  AAAATGC---ATTGG------------------CTAAACT--CAAAGAAA  71

seq1  GGGTGCCCTTCCCAATATTCTTAGCTCAGCACCCTAAATCTGCCCTCAGC  147
      |  ||              | ||       | |||||| || |||     
seq2  GACTG--------------CGTA-------ATCCTAAACCTCCCC-----  95

seq1  TTTAGTTGCTACCCCAGGCCCA  169
           |||||||||||||||||
seq2  -----TTGCTACCCCAGGCCCA  112