BAC Information

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BAC

Clone NameB6Ng01-343A18
Chromosome4 (Build37)
Map Location 146,766,066 - 146,890,668
singlet/doubletdoublet
Overlap geneLOC627701, OTTMUSG00000010671
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Downstream geneLOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343A18.bB6Ng01-343A18.g
ACCGA125935GA125936
length1,1441,176
definitionB6Ng01-343A18.b B6Ng01-343A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,766,066 - 146,767,079)(146,889,484 - 146,890,668)
sequence
gaattctacaggagagaaaccttacaaatgtagtgaatgtgacaaagctt
tactgagaaagtcaatctgagaaggcatcagagaactcatacaggggaga
attcttacaaatgtattgaatgtgacaaatgttttgcccagaaatcctat
cttgtttttaatcacagaaatcatacattaaagaagccttacaaatgcag
tcaatgtgacaaatgattttcccacaaacttagtctgagaatgcatcaga
gaattcatacagtagagaaaacttacaaaaatgcagtgaatgtgataaat
gctttactaataaaggcagactgagaattaatcagataatttatacattt
aaaaaaacccttacaagtattttgtatgtgataaatgcagtacccacaac
atcagtctgacaaatcaacagatatttcaaacagtagagcaacattataa
atgaaatgaatgagatagtcctttaacaagaaatatcatcttaaaattca
ctggagaattcttccaaaagggaaacttttcaaatacattgacggtttga
atcctttattttggcctatctcttagaatgtaatagataatttatacagt
caagaatcttaacaaatataatatatgctgaaatatctttgacttcattt
cagtgcagaaaaaatatgtaaaaaaatttttttatgggaaaaatagttct
cctggggaaatgtggcatatgttttacacgggtaatattcttttcaacag
tcagtgctctaaactagagaattattatgaatctgaaaacttttgaaaac
cttcatgcaatgttcaaatcttagataatgtcaactattatgctggcagt
aactctgaatatatgatagtgaagagacattttcattaaacttttacttg
ttcaccctcaatattatatgatgaagtcaggtgtgaaagccagagatatg
atgttgtgcaacaattcatggagatagaatgatccattccaaaggaaact
aatgaagagtgtactatcgccttcaaatgtctaatgaaactggcagcatt
tttgtattatttgaattcaatgaggaaattggacgcaggattgtacttga
tagtgtatttggacaaacctgcagccaccagactgcctgttctt
gaattcaagagagagtagtagacttcttgctgaggctctgacagcttcta
catattttcggttttgagcctttttatcttcacctagtaatacttgcctg
gagcactaagctgaatcttacctatttcagttaacacaaatcaccatatg
taaaacagtgtttctaacttttttaatgctaaacactgacatagaattct
aattatttttagcagggcaaactaccctgcagttcaatgaatgatttcgc
agttttaagacaattggaaatatgtgtttccctgtacttttaagcaataa
ctgtgacagggtcgttacatcccaaagggattgttatccaccagttgaaa
atcactactattaactttatgatacaggtttgcaaaaatttcatgacttc
tgcatatgttttatgtgaggcatttcctgggaagatgcaacatatattca
tctgagtatcccaagggcaagttgaaaacaaccaaagcaaccttgtagaa
tctttcagctttattggagttagttacaggacaataggaaaggagttgtt
gagcagatcacaagagactcggagtcacttgttatcctataatgtgaaac
aagtatttgagaagaattatgattactggatactcgaagcacacttcaca
tctgcaagcatatttatagaataaagaatatgctgtctgggtagctcagt
ttgccagataatcttttaagtatatttttatcttaattggttcattttaa
ttaaatatacagaatgttaccagttttattagatattttgaggattgtat
taaagaccttaaatagtttccttttgaaatggattatttctgtcttaaag
aaagtgttacacaatactatcttctgacttcccagcttgtcttcatcttg
ccacatttgagggtgaacaaatagaaaggtgtcatgaaaagctttctaca
actgggcgtggtggcacatgtctttaatccaagcactcgggagagagagg
caggcggattactgagttcgaggccagcctggtcttcaggatgggccatg
gattatcagaagaaacccttgtcttctaaaatcaactctccctcgataaa
gaggaagtagaagaagagaagaagaagaagaagctgctacattttcaatt
gttcggagtcgcacattattttaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146766066_146767079
seq2: B6Ng01-343A18.b_168_1183

seq1  ATGTTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACAT  50

seq1  TAAAGAAGCCTTACAAATGTAGTCAATGTGACAAATGATTTTCCCACAAA  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAAAGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAA  100

seq1  CTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAATTTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAACTTACAA  150

seq1  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAAT  200

seq1  TAATCAGATAATTTATACATTTAAAAAAAAACCTTACAAGTATTTTGTAT  250
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  TAATCAGATAATTTATACATTT-AAAAAAACCCTTACAAGTATTTTGTAT  249

seq1  GTGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTT  299

seq1  CAAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAATCCTTTAAC  350
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAGTCCTTTAAC  349

seq1  AAGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACT  399

seq1  TTTCAAATACATTGATGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGA  450
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTCAAATACATTGACGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGA  449

seq1  ATGTAACAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATG  500
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGTAATAGATAATTTATACAGTCAAGAATCTTAACAAATATAATATATG  499

seq1  CTGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGT-AAAATAT  549
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  CTGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAAT  549

seq1  TTTTTTATGGGAAAAAAAGTTCTCCTGGGGAAATGTGGCATATGTTTTAC  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTTTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTAC  599

seq1  ACGGGTAATATTCTTTTCAACAGTTAGTGCTCTAAACTAGAGA---ATTA  646
      |||||||||||||||||||||||| ||||||||||||||||||   ||||
seq2  ACGGGTAATATTCTTTTCAACAGTCAGTGCTCTAAACTAGAGAATTATTA  649

seq1  TGAATCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTTAGATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTTAGATA  699

seq1  ATGTCAACTATTATGCTGGCAGTAACTCTGAATATATGATAATGAAGAAA  746
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  ATGTCAACTATTATGCTGGCAGTAACTCTGAATATATGATAGTGAAGAGA  749

seq1  CATTTTCATTAAACTTTTACTTGTTCACCCTCAAATATTATATGATGAAG  796
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATTTTCATTAAACTTTTACTTGTTCACCCTC-AATATTATATGATGAAG  798

seq1  TCAGGTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAATTCATGGAGA  846
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  TCAGGTGTGAAAGCCAGA--GATATGATGTTGTGCAACAATTCATGGAGA  846

seq1  TAGAAATGATCCATTCCAAAAGGAAACTAAATAAAGAGTGTACTATCGCC  896
      ||| ||||||||||||| |||||||||| ||| |||||||||||||||||
seq2  TAG-AATGATCCATTCC-AAAGGAAACT-AATGAAGAGTGTACTATCGCC  893

seq1  TTCAAAATGTCTAATAAAACTGGCAGCA-TTTTGTA-TATTT-AATTCAA  943
      ||| ||||||||||| |||||||||||| ||||||| ||||| ||||| |
seq2  TTC-AAATGTCTAATGAAACTGGCAGCATTTTTGTATTATTTGAATTC-A  941

seq1  ATGAAGAAATT-GACACA-GATTGTACTTGATAGTGTATTT-GACAAA-C  989
      |||| |||||| ||| || |||||||||||||||||||||| |||||| |
seq2  ATGAGGAAATTGGACGCAGGATTGTACTTGATAGTGTATTTGGACAAACC  991

seq1  TG-AGCCACCAAGACTGCATGTTCTT  1014
      || ||||||| ||||||| |||||||
seq2  TGCAGCCACC-AGACTGCCTGTTCTT  1016

seq1: chr4_146889484_146890668
seq2: B6Ng01-343A18.g_64_1239 (reverse)

seq1  TCTT-AAATAATGT-CGACTCTGACAATTTGAAAAAATGTAGCAAGCCTT  48
      |||| ||||||||| |||||| ||  | |||  |||||||||| |||   
seq2  TCTTAAAATAATGTGCGACTCCGAACAATTG--AAAATGTAGC-AGC---  44

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTGGGG  98
         ||| |||||   |||||   |||||   | ||| || ||| | | ||
seq2  ---TTC-TTCTT--CTTCTTCTCTTCTT--CTACTTCCTCTTTATCGAGG  86

seq1  GGGGGTTGGTTTTTAGAGAC-AGGGTTTC-TCTGTATATCCATGG-CCAT  145
      | | |||| ||||   |||| |||||||| ||||   |||||||| ||||
seq2  GAGAGTTGATTTTAGAAGACAAGGGTTTCTTCTGATAATCCATGGCCCAT  136

seq1  CCTGTAGACCAGGCTGGCCTCGAACTCAGTAATCCGCCTGCCTCTCTCTC  195
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGACCAGGCTGGCCTCGAACTCAGTAATCCGCCTGCCTCTCTCTC  186

seq1  CCGAGTGCTTGGATTAAAGACATGTGCCACCACGCCCAGTTGTAGAAAGC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGCTTGGATTAAAGACATGTGCCACCACGCCCAGTTGTAGAAAGC  236

seq1  TTTTCATGACACCTTTTTATTTGTTCACCCTCAAATGTGGCAAGATGAAG  295
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTCATGACACCTTTCTATTTGTTCACCCTCAAATGTGGCAAGATGAAG  286

seq1  ACAAGCTGGGAAGTCAGAAGATAGTATTGTGTAACACTTTCTTTAAGACA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGGGAAGTCAGAAGATAGTATTGTGTAACACTTTCTTTAAGACA  336

seq1  GAAATAATCCATTTCAAAAGGAAACTATTTAAGGTCTTTAATACAATCCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATCCATTTCAAAAGGAAACTATTTAAGGTCTTTAATACAATCCT  386

seq1  CAAAATATCTAATAAAACTGGTAACATTCTGTATATTTAATTAAAATGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATCTAATAAAACTGGTAACATTCTGTATATTTAATTAAAATGAA  436

seq1  CCAATTAAGATAAAAATATACTTAAAAGATTATCTGGCAAACTGAGCTAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAAGATAAAAATATACTTAAAAGATTATCTGGCAAACTGAGCTAC  486

seq1  CCAGACAGCATATTCTTTATTCTATAAATATGCTTGCAGATGTGAAGTGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGCATATTCTTTATTCTATAAATATGCTTGCAGATGTGAAGTGT  536

seq1  GCTTCGAGTATCCAGTAATCATAATTCTTCTCAAATACTTGTTTCACATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGAGTATCCAGTAATCATAATTCTTCTCAAATACTTGTTTCACATT  586

seq1  ATAGGATAACAAGTGACTCCGAGTCTCTTGTGATCTGCTCAACAACTCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATAACAAGTGACTCCGAGTCTCTTGTGATCTGCTCAACAACTCCT  636

seq1  TTCCTATTGTCCTGTAACTAACTCCAATAAAGCTGAAAGATTCTACAAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTGTCCTGTAACTAACTCCAATAAAGCTGAAAGATTCTACAAGG  686

seq1  TTGCTTTGGTTGTTTTCAACTTGCCCTTGGGATACTCAGATGAATATATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGGTTGTTTTCAACTTGCCCTTGGGATACTCAGATGAATATATG  736

seq1  TTGCATCTTCCCAGGAAATGCCTCACATAAAACATATGCAGAAGTCATGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTTCCCAGGAAATGCCTCACATAAAACATATGCAGAAGTCATGA  786

seq1  AATTTTTGCAAACCTGTATCATAAAGTTAATAGTAGTGATTTTCAACTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGCAAACCTGTATCATAAAGTTAATAGTAGTGATTTTCAACTGG  836

seq1  TGGATAACAATCCCTTTGGGATGTAACGACCCTGTCACAGTTATTGCTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAACAATCCCTTTGGGATGTAACGACCCTGTCACAGTTATTGCTTA  886

seq1  AAAGTACAGGGAAACACATATTTCCAATTGTCTTAAAACTGCGAAATCAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACAGGGAAACACATATTTCCAATTGTCTTAAAACTGCGAAATCAT  936

seq1  TCATTGAACTGCAGGGTAGTTTGCCCTGCTAAAAATAATTAGAATTCTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAACTGCAGGGTAGTTTGCCCTGCTAAAAATAATTAGAATTCTAT  986

seq1  GTCAGTGTTTAGCATTAAAAAAGTTAGAAACACTGTTTTACATATGGTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTTTAGCATTAAAAAAGTTAGAAACACTGTTTTACATATGGTGA  1036

seq1  TTTGTGTTAACTGAAATAGGTAAGATTCAGCTTAGTGCTCCAGGCAAGTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTAACTGAAATAGGTAAGATTCAGCTTAGTGCTCCAGGCAAGTA  1086

seq1  TTACTAGGTGAAGATAAAAAGGCTCAAAACCGAAAATATGTAGAAGCTGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGGTGAAGATAAAAAGGCTCAAAACCGAAAATATGTAGAAGCTGT  1136

seq1  CAGAGCCTCAGCAAGAAGTCTACTACTCTCTCTTGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTCAGCAAGAAGTCTACTACTCTCTCTTGAATTC  1176