BAC Information

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BAC

Clone NameB6Ng01-343D22
Chromosome4 (Build37)
Map Location 58,092,528 - 58,229,393
singlet/doubletdoublet
Overlap geneSvep1
Upstream geneEpb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8
Downstream geneMusk, Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343D22.bB6Ng01-343D22.g
ACCGA126072GA126073
length1,178720
definitionB6Ng01-343D22.b B6Ng01-343D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,228,212 - 58,229,393)(58,092,528 - 58,093,247)
sequence
gaattcacaagtgaaaggaacacgtaggttctttcttcccatctcagcca
gggtcttttatgtacctgatgagggaatattatgagctgcatcatgagaa
ttttgtgctctactatttatctgccttctgttgtttggggaaaacaacct
aaaacaggcattaaaatttatttaagtaaaaaactgggaagtttcagaga
aaggttgtcatgtatattcaaggctaatcgttttgtgagtgctttatctg
ttgcagtgagccacagggttagctcaaattgaaggtatgagggtaaatcc
atcccttggcagtgaagaacagagagagtaatctacccccacgaagatga
gggaatgcagaggtgaggaaggtaaataataaaaaacaaaacagggaaat
ctaaagtggaatgattagaaacgaaagttttttgttacaagtcatgcagg
tagattgatcccttcccagagcatctaaaacaaaacaacaaaacaaaaca
aaacaggcggaaatggatgttaaagacgtgaattgggaataatgttgata
atgaaggcaataatgaaatagaggtgccatccagacatagattaattcta
ggcaaatatgttaagtgaggggacggagtgatgctgtagtggttagagca
tttgatgctcttgcagacctgagttcatttggttcctagcacccagctgt
attgggcagctcaagcttcctacaactctagctactgggagatacaatgc
cctcttctggtctccaaggacacctgtacccatgtggtttacacacacac
acacacacaattacacatgactagaaactaaaaataaatctttacaacta
tttgtaccaagtgaataaactttaatgttaactttaatgtttaaacttta
atgtttttaatgttatgaatgctcacagggactatataactattatgaac
atgtatgaataaactttaagaccattccaatgtgaatcttgaaaacacaa
atataaattgtcaaaactgtgccagtcttgacattcttctcagcctctac
agatgcaaagattaagtgaatgagaacacaaagccctttgattaaatgta
atattaataagatgattcataagacacgagaacttaattctacactaaat
ggccttattttttctcaaaatcctaatg
ttctgctttagcgcgagtaatggtattgtttttgttcggccacattgttg
aagtattatgggtgcagtttcctgtcatctctaggagacttactatcaca
accagctccctaatctgcttgctggctcttacaatcttcccacgctcgct
tcatttgtgcgttttaaacaattagatttggaattccaggtaactgttta
tgattggacgcttcacctcttcttgactgaaggtgttgtcgccacctgct
ggcagtcacatgtaagttacacctcttatctgggccagcaaggtcacttt
tcattttggtaacttattactatcttgcaaagctaaaaatacgaatattc
tacgacccaagctacagcttgcaatgtctaggccagggatatcctatttt
atatgttccaggaaacagacaggaatactcggtgtaactctgcttttata
agaaaataaagtgggagcacattagtgtagtactgtagagaaatgagtaa
tttagagatttgggatttgtgctgaaatgactattcacatgttcaaccac
catagacaattccctcctgtactgtggatagccagcaggggcccatcact
tcttatgataatcacattacactaaagttattgctgttgttttaattcag
gatttcagaaagttctcatgtcagtgtttgaggttccaggacatgtcacc
acctctgtggtgcctgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58228212_58229393
seq2: B6Ng01-343D22.b_46_1223 (reverse)

seq1  CATTA-GATTTTGAGAAAAAATAAGCAATTTTAGTTGTAGGATATAAATT  49
      ||||| |||||||||||||||||||    ||||| ||||| || ||| ||
seq2  CATTAGGATTTTGAGAAAAAATAAGGCCATTTAG-TGTAGAAT-TAAGTT  48

seq1  CTTCTGTCTTATAAATCATCTTTATTATA-TACA-TTAATCAAA-GGCTC  96
      ||  |||||||| |||||||||  | ||| |||| ||||||||| |||| 
seq2  CTCGTGTCTTATGAATCATCTTATTAATATTACATTTAATCAAAGGGCTT  98

seq1  TGTGTCTTCATTCACTTTAATCTTTTCCATCTGTAGAGGCTGAG-AGAAT  145
      |||||  |||||||| |||||| ||| ||||||||||||||||| |||||
seq2  TGTGTTCTCATTCAC-TTAATC-TTTGCATCTGTAGAGGCTGAGAAGAAT  146

seq1  GTTCAAGACTGGCACAGTTTTGACAATTTATATTTGTGTTTTCAAGATTC  195
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TCAAGACTGGCACAGTTTTGACAATTTATATTTGTGTTTTCAAGATTC  195

seq1  ACATTTGGAATGGTCTTTAAAGTTTTATTCATACATGTTCATAATAGTTA  245
      ||| ||||||||||| |||||| |||||||||||||||||||||||||||
seq2  ACA-TTGGAATGGTC-TTAAAG-TTTATTCATACATGTTCATAATAGTTA  242

seq1  TATAGTCCCTGTGAGCATTCATAACATTAAAAACATTAAAGTTTAAACAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCCCTGTGAGCATTCATAACATTAAAAACATTAAAGTTTAAACAT  292

seq1  TAAAGTTTAACATTAAAGTTTATTCACTTGGTACAAATAGTTGTAAAGAT  345
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAG-TTAACATTAAAGTTTATTCACTTGGTACAAATAGTTGTAAAGAT  341

seq1  TTATTTTTAGTTTCTAGTCATGTGTAATTGTGTGTGTGTGTGTGTGTAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAGTTTCTAGTCATGTGTAATTGTGTGTGTGTGTGTGTGTAAA  391

seq1  CCACATGGGTACAGGTGTCCTTGGAGACCAGAAGAGGGCATTGTATCTCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGGTACAGGTGTCCTTGGAGACCAGAAGAGGGCATTGTATCTCC  441

seq1  CAGTAGCTAGAGTTGTAGGAAGCTTGAGCTGCCCAATACAGCTGGGTGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCTAGAGTTGTAGGAAGCTTGAGCTGCCCAATACAGCTGGGTGCT  491

seq1  AGGAACCAAATGAACTCAGGTCTGCAAGAGCATCAAATGCTCTAACCACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCAAATGAACTCAGGTCTGCAAGAGCATCAAATGCTCTAACCACT  541

seq1  ACAGCATCACTCCGTCCCCTCACTTAACATATTTGCCTAGAATTAATCTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATCACTCCGTCCCCTCACTTAACATATTTGCCTAGAATTAATCTA  591

seq1  TGTCTGGATGGCACCTCTATTTCATTATTGCCTTCATTATCAACATTATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGATGGCACCTCTATTTCATTATTGCCTTCATTATCAACATTATT  641

seq1  CCCAATTCACGTCTTTAACATCCATTTCCGCCTGTTTTGTTTTGTTTTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTCACGTCTTTAACATCCATTTCCGCCTGTTTTGTTTTGTTTTGT  691

seq1  TGTTTTGTTTTAGATGCTCTGGGAAGGGATCAATCTACCTGCATGACTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTAGATGCTCTGGGAAGGGATCAATCTACCTGCATGACTTG  741

seq1  TAACAAAAAACTTTCGTTTCTAATCATTCCACTTTAGATTTCCCTGTTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAAAACTTTCGTTTCTAATCATTCCACTTTAGATTTCCCTGTTTT  791

seq1  GTTTTTTATTATTTACCTTCCTCACCTCTGCATTCCCTCATCTTCGTGGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTATTATTTACCTTCCTCACCTCTGCATTCCCTCATCTTCGTGGG  841

seq1  GGTAGATTACTCTCTCTGTTCTTCACTGCCAAGGGATGGATTTACCCTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATTACTCTCTCTGTTCTTCACTGCCAAGGGATGGATTTACCCTCA  891

seq1  TACCTTCAATTTGAGCTAACCCTGTGGCTCACTGCAACAGATAAAGCACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCAATTTGAGCTAACCCTGTGGCTCACTGCAACAGATAAAGCACT  941

seq1  CACAAAACGATTAGCCTTGAATATACATGACAACCTTTCTCTGAAACTTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACGATTAGCCTTGAATATACATGACAACCTTTCTCTGAAACTTC  991

seq1  CCAGTTTTTTACTTAAATAAATTTTAATGCCTGTTTTAGGTTGTTTTCCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTTTACTTAAATAAATTTTAATGCCTGTTTTAGGTTGTTTTCCC  1041

seq1  CAAACAACAGAAGGCAGATAAATAGTAGAGCACAAAATTCTCATGATGCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACAGAAGGCAGATAAATAGTAGAGCACAAAATTCTCATGATGCA  1091

seq1  GCTCATAATATTCCCTCATCAGGTACATAAAAGACCCTGGCTGAGATGGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAATATTCCCTCATCAGGTACATAAAAGACCCTGGCTGAGATGGG  1141

seq1  AAGAAAGAACCTACGTGTTCCTTTCACTTGTGAATTC  1182
      |||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAACCTACGTGTTCCTTTCACTTGTGAATTC  1178

seq1: chr4_58092528_58093247
seq2: B6Ng01-343D22.g_76_795

seq1  TTCTGCTTTAGCGCGAGTAATGGTATTGTTTTTGTTCGGCCACATTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTTAGCGCGAGTAATGGTATTGTTTTTGTTCGGCCACATTGTTG  50

seq1  AAGTATTATGGGTGCAGTTTCCTGTCATCTCTAGGAGACTTACTATCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTATGGGTGCAGTTTCCTGTCATCTCTAGGAGACTTACTATCACA  100

seq1  ACCAGCTCCCTAATCTGCTTGCTGGCTCTTACAATCTTCCCACGCTCGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTCCCTAATCTGCTTGCTGGCTCTTACAATCTTCCCACGCTCGCT  150

seq1  TCATTTGTGCGTTTTAAACAATTAGATTTGGAATTCCAGGTAACTGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTGCGTTTTAAACAATTAGATTTGGAATTCCAGGTAACTGTTTA  200

seq1  TGATTGGACGCTTCACCTCTTCTTGACTGAAGGTGTTGTCGCCACCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGACGCTTCACCTCTTCTTGACTGAAGGTGTTGTCGCCACCTGCT  250

seq1  GGCAGTCACATGTAAGTTACACCTCTTATCTGGGCCAGCAAGGTCACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCACATGTAAGTTACACCTCTTATCTGGGCCAGCAAGGTCACTTT  300

seq1  TCATTTTGGTAACTTATTACTATCTTGCAAAGCTAAAAATACGAATATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGGTAACTTATTACTATCTTGCAAAGCTAAAAATACGAATATTC  350

seq1  TACGACCCAAGCTACAGCTTGCAATGTCTAGGCCAGGGATATCCTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACCCAAGCTACAGCTTGCAATGTCTAGGCCAGGGATATCCTATTTT  400

seq1  ATATGTTCCAGGAAACAGACAGGAATACTCGGTGTAACTCTGCTTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTCCAGGAAACAGACAGGAATACTCGGTGTAACTCTGCTTTTATA  450

seq1  AGAAAATAAAGTGGGAGCACATTAGTGTAGTACTGTAGAGAAATGAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAAGTGGGAGCACATTAGTGTAGTACTGTAGAGAAATGAGTAA  500

seq1  TTTAGAGATTTGGGATTTGTGCTGAAATGACTATTCACATGTTCAACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGATTTGGGATTTGTGCTGAAATGACTATTCACATGTTCAACCAC  550

seq1  CATAGACAATTCCCTCCTGTACTGTGGATAGCCAGCAGGGGCCCATCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACAATTCCCTCCTGTACTGTGGATAGCCAGCAGGGGCCCATCACT  600

seq1  TCTTATGATAATCACATTACACTAAAGTTATTGCTGTTGTTTTAATTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGATAATCACATTACACTAAAGTTATTGCTGTTGTTTTAATTCAG  650

seq1  GATTTCAGAAAGTTCTCATGTCAGTGTTTGAGGTTCCAGGACATGTCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGAAAGTTCTCATGTCAGTGTTTGAGGTTCCAGGACATGTCACC  700

seq1  ACCTCTGTGGTGCCTGTGTG  720
      ||||||||||||||||||||
seq2  ACCTCTGTGGTGCCTGTGTG  720