BAC Information

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BAC

Clone NameB6Ng01-343F15
Chromosome4 (Build37)
Map Location 71,181,357 - 71,316,874
singlet/doubletdoublet
Overlap genenone
Upstream geneMegf9, LOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343F15.bB6Ng01-343F15.g
ACCGA126152GA126153
length1,1321,186
definitionB6Ng01-343F15.b B6Ng01-343F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,315,746 - 71,316,874)(71,181,357 - 71,182,551)
sequence
gaattccaggagcagatatgccctggtgttttcttctgcagaattttatg
aatacctgctcctcccgtaattgtacttcaaaacccattgcctcagtagt
agagcatccttattagatagggcactacagggcctggagctcatctctca
gagtcaatggctgaaagaccattgttctatagagatgatcaacactagct
tgctgatacaccctttccttcgatgtttgcttctcaacctgtggtatgct
ctgttgtagtaaagcactccaactcgtggatttgaatatacctaatatct
gaagatccagtttatggtaggagtagacataaaaaataaacaagctctct
gatatatctttcttttttctactaatctgattacttgttcctcctactct
gcaatcatttgtaacctgttataaaagtgttcagaatactctactcagca
accagctttctaagttctctacataccagtcatttctcatttttaattat
agtatcttaaggaggcttcaatattatttttgaatacatttgatcagcct
tgtcagtgttatcagattatttattgatataagatccttgaattttacca
ttatttctaccattcaattcagtttcatcagtcaaaaagtcagatttgca
ttatcatttaccatgtcttctcaagagaagagagtcttaccaatgtacaa
cgatataatgaacagccttcattacaggtgattccaaagcagtaactttt
gggtctcagatcagtggggactaaagccacatgtttaccttttctcttgg
tttgtaactgtcttctttgtgttctcatgcagctagggacctgtctctac
cacagggaataatggaatagtaatcatatcaactccagactgttttcaag
gaacacataagatctgtcttattaaagcctgtccttggaatgaggatatt
catgacccaccagtataagttacacatgccataagaaatttgtatacttt
tgagttctacagtcttttctattaataatcaccttcaaagctagattgaa
gaaaaaatcaaatcatgactatacagcttctgaacagatggaaatgtgaa
gaagacttatgaaatcatgaatgtgaggtcac

gaattcacagacatagtaagcgtcatagaatgtggtctacactggaactt
gcaagcctcgtgcaaactgtggaacttaggtgggggtcttctgggagatg
gaagtctcctctttccttcacacctgccaatgctattgttgcctaagttt
gactttgtcctaaccttaattagaatccgtgtacaatttgaatatgacac
gttgattagactcagtggcaaaaagctcaagactaaatttccaggatgtt
ttcacatgaaattcaacatcataatcatcctgaatattaggcaaattatc
tatacatagaatcagtatataagcctgttaaaagtactttcaatgttaag
gcatcaaaagaaattgatggagatgagactacagcccttgatagctatct
catgaactaacaccaaatctcatatttctattatacatactcatcttcct
aacagaatttgtgaaaagaaatataagaaagaaagtttatgagtggcaca
agaaaaaaaatgtcatccctgatgagaaaggctgagagctgccacagtct
gccaattctttgtagttgttaaaagaggccttgacagagtgccccatgga
gctgctaatgaacacagggcctggagagaatggaaaatcttctgtaactg
gctgctcctgagagtcactcagggtagccttaggcaaatattcagagcaa
gaagcctttaatattcaggtcttccctctctttattcactctggaaatct
gcatctcatctcccacccaccaactgtcattacagcttcttgagaatcag
gatgctcaccaacctcctcttccttcttaccatcaaggagccactggccc
caaggaacaattgcagtatctgtcatttacttaagtttcctttatctttg
ccaactgaagcccctatggtcgactggctttttagcctcttctttcctct
cattggctctcctcacactgagtagccttcagtcccttggttataactca
gtctcaaacattttatttattctaaatagatttttaccaaagtttcatag
aagagagcattgaaatgttttatatttttttcagcagtaaaaattttttt
ctgactagtaaatttagtggttctcaaggtcatgccagttaagcaaggac
actcctatttaatgaaatctactcttttacaggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_71315746_71316874
seq2: B6Ng01-343F15.b_47_1178 (reverse)

seq1  GTGA-CTCACA-TCATGATTCATTAGGTTCTCTTCACATTTTCCATCTGT  48
      |||| |||||| ||||||||   || ||  |||||||| |||||||||||
seq2  GTGACCTCACATTCATGATTTCATAAGTCTTCTTCACA-TTTCCATCTGT  49

seq1  TCAGAAGCTGTATAGTCATGATTTGA-TTTTTCTTCAATCTAGCCTTG-A  96
      |||||||||||||||||||||||||| ||||||||||||||||| ||| |
seq2  TCAGAAGCTGTATAGTCATGATTTGATTTTTTCTTCAATCTAGCTTTGAA  99

seq1  GGTGATTATTAATAG-AAAGACTGTAGAACTCAAAAGTTATACAAATTTC  145
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  GGTGATTATTAATAGAAAAGACTGTAGAACTCAAAAG-TATACAAATTTC  148

seq1  TTATGGCATGTGTAACTTATACTGGTGGGTCATGAATATCCTCATTCCAA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCATGTGTAACTTATACTGGTGGGTCATGAATATCCTCATTCCAA  198

seq1  GGACAGGCTTTAATAAGACAGATCTTATGTGTTCCTTGAAAACAGTCTGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCTTTAATAAGACAGATCTTATGTGTTCCTTGAAAACAGTCTGG  248

seq1  AGTTGATATGATTACTATTCCATTATTCCCTGTGGTAGAGACAGGTCCCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATATGATTACTATTCCATTATTCCCTGTGGTAGAGACAGGTCCCT  298

seq1  AGCTGCATGAGAACACAAAGAAGACAGTTACAAACCAAGAGAAAAGGTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATGAGAACACAAAGAAGACAGTTACAAACCAAGAGAAAAGGTAA  348

seq1  ACATGTGGCTTTAGTCCCCACTGATCTGAGACCCAAAAGTTACTGCTTTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGCTTTAGTCCCCACTGATCTGAGACCCAAAAGTTACTGCTTTG  398

seq1  GAATCACCTGTAATGAAGGCTGTTCATTATATCGTTGTACATTGGTAAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACCTGTAATGAAGGCTGTTCATTATATCGTTGTACATTGGTAAGA  448

seq1  CTCTCTTCTCTTGAGAAGACATGGTAAATGATAATGCAAATCTGACTTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTCTTGAGAAGACATGGTAAATGATAATGCAAATCTGACTTTT  498

seq1  TGACTGATGAAACTGAATTGAATGGTAGAAATAATGGTAAAATTCAAGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGATGAAACTGAATTGAATGGTAGAAATAATGGTAAAATTCAAGGA  548

seq1  TCTTATATCAATAAATAATCTGATAACACTGACAAGGCTGATCAAATGTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATCAATAAATAATCTGATAACACTGACAAGGCTGATCAAATGTA  598

seq1  TTCAAAAATAATATTGAAGCCTCCTTAAGATACTATAATTAAAAATGAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAATAATATTGAAGCCTCCTTAAGATACTATAATTAAAAATGAGA  648

seq1  AATGACTGGTATGTAGAGAACTTAGAAAGCTGGTTGCTGAGTAGAGTATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTGGTATGTAGAGAACTTAGAAAGCTGGTTGCTGAGTAGAGTATT  698

seq1  CTGAACACTTTTATAACAGGTTACAAATGATTGCAGAGTAGGAGGAACAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACTTTTATAACAGGTTACAAATGATTGCAGAGTAGGAGGAACAA  748

seq1  GTAATCAGATTAGTAGAAAAAAGAAAGATATATCAGAGAGCTTGTTTATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAGATTAGTAGAAAAAAGAAAGATATATCAGAGAGCTTGTTTATT  798

seq1  TTTTATGTCTACTCCTACCATAAACTGGATCTTCAGATATTAGGTATATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTCTACTCCTACCATAAACTGGATCTTCAGATATTAGGTATATT  848

seq1  CAAATCCACGAGTTGGAGTGCTTTACTACAACAGAGCATACCACAGGTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCACGAGTTGGAGTGCTTTACTACAACAGAGCATACCACAGGTTG  898

seq1  AGAAGCAAACATCGAAGGAAAGGGTGTATCAGCAAGCTAGTGTTGATCAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAACATCGAAGGAAAGGGTGTATCAGCAAGCTAGTGTTGATCAT  948

seq1  CTCTATAGAACAATGGTCTTTCAGCCATTGACTCTGAGAGATGAGCTCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAGAACAATGGTCTTTCAGCCATTGACTCTGAGAGATGAGCTCCA  998

seq1  GGCCCTGTAGTGCCCTATCTAATAAGGATGCTCTACTACTGAGGCAATGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGTAGTGCCCTATCTAATAAGGATGCTCTACTACTGAGGCAATGG  1048

seq1  GTTTTGAAGTACAATTACGGGAGGAGCAGGTATTCATAAAATTCTGCAGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAAGTACAATTACGGGAGGAGCAGGTATTCATAAAATTCTGCAGA  1098

seq1  AGAAAACACCAGGGCATATCTGCTCCTGGAATTC  1129
      ||||||||||||||||||||||||||||||||||
seq2  AGAAAACACCAGGGCATATCTGCTCCTGGAATTC  1132


seq1: chr4_71181357_71182551
seq2: B6Ng01-343F15.g_67_1252

seq1  GAATTCACAGACATAGTAAGCGTCATAGAATGTGGTCTACACTGGAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGACATAGTAAGCGTCATAGAATGTGGTCTACACTGGAACTT  50

seq1  GCAAGCCTCGTGCAAACTGTGGAACTTAGGTGGGGGTCTTCTGGGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCTCGTGCAAACTGTGGAACTTAGGTGGGGGTCTTCTGGGAGATG  100

seq1  GAAGTCTCCTCTTTCCTTCACACCTGCCAATGCTATTGTTGCCTAAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTCCTCTTTCCTTCACACCTGCCAATGCTATTGTTGCCTAAGTTT  150

seq1  GACTTTGTCCTAACCTTAATTAGAATCCGTGTACAATTTGAATATGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTCCTAACCTTAATTAGAATCCGTGTACAATTTGAATATGACAC  200

seq1  GTTGATTAGACTCAGTGGCAAAAAGCTCAAGACTAAATTTCCAGGATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTAGACTCAGTGGCAAAAAGCTCAAGACTAAATTTCCAGGATGTT  250

seq1  TTCACATGAAATTCAACATCATAATCATCCTGAATATTAGGCAAATTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGAAATTCAACATCATAATCATCCTGAATATTAGGCAAATTATC  300

seq1  TATACATAGAATCAGTATATAAGCCTGTTAAAAGTACTTTCAATGTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAGAATCAGTATATAAGCCTGTTAAAAGTACTTTCAATGTTAAG  350

seq1  GCATCAAAAGAAATTGATGGAGATGAGACTACAGCCCTTGATAGCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAAAGAAATTGATGGAGATGAGACTACAGCCCTTGATAGCTATCT  400

seq1  CATGAACTAACACCAAATCTCATATTTCTATTATACATACTCATCTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTAACACCAAATCTCATATTTCTATTATACATACTCATCTTCCT  450

seq1  AACAGAATTTGTGAAAAGAAATATAAGAAAGAAAGTTTATGAGTGGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATTTGTGAAAAGAAATATAAGAAAGAAAGTTTATGAGTGGCACA  500

seq1  AGAAAAAAAATGTCATCCCTGATGAGAAAGGCTGAGAGCTGCCACAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAATGTCATCCCTGATGAGAAAGGCTGAGAGCTGCCACAGTCT  550

seq1  GCCAATTCTTTGTAGTTGTTAAAAGAGGCCTTGACAGAGTGCCCCATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTCTTTGTAGTTGTTAAAAGAGGCCTTGACAGAGTGCCCCATGGA  600

seq1  GCTGCTAATGAACACAGGGCCTGGAGAGAATGGAAAATCTTCTGTAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTAATGAACACAGGGCCTGGAGAGAATGGAAAATCTTCTGTAACTG  650

seq1  GCTGCTCCTGAGAGTCACTCAGGGTAGCCTTAGGCAAATATTCAGAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCCTGAGAGTCACTCAGGGTAGCCTTAGGCAAATATTCAGAGCAA  700

seq1  GAAGCCTTTAATATTCAGGTCTTCCCTCTCTTTATTCACTCTGGAAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTTAATATTCAGGTCTTCCCTCTCTTTATTCACTCTGGAAATCT  750

seq1  GCATCTCATCTCCCACCCACCAACTGTCATTACAGCTTCTTGAGAATCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCATCTCCCACCCACCAACTGTCATTACAGCTTCTTGAGAATCAG  800

seq1  GATGCTCACCAACCTCCTCTTCCTTCTTACCATCAAGGAGCCACTGGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCACCAACCTCCTCTTCCTTCTTACCATCAAGGAGCCACTGGCCC  850

seq1  CAAGGAACAATTGCAGTATCTGTCATTTACTTAAGTTTCCTTTATCTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACAATTGCAGTATCTGTCATTTACTTAAGTTTCCTTTATCTTTG  900

seq1  CCAACTGAAGCCCCTATGGTCGACTGGCTTTTTAGCCTCTTCTTTCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCAACTGAAGCCCCTATGGTCGACTGGCTTTTTAGCCTCTTCTTTCCTC-  949

seq1  TCATTGGCTCTCCTCACACTGAGTAGCCTTCAGTCCCTTGGTTATAACTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCTCTCCTCACACTGAGTAGCCTTCAGTCCCTTGGTTATAACTC  999

seq1  AGTCTCAAAACATTTTATTTATTCTAAATAGATTTTAACCAAAGTTTCAT  1050
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTCTC-AAACATTTTATTTATTCTAAATAGATTTTTACCAAAGTTTCAT  1048

seq1  AGAAAGAAGAAGCATTGAAAATGTTTATA-TTTTTTCAGCAGTAAACATT  1099
      || ||||   ||||||||||   |||||| |||||||||||||||| | |
seq2  AG-AAGA--GAGCATTGAAATGTTTTATATTTTTTTCAGCAGTAAA-AAT  1094

seq1  TTTTTTCTGAGTAAGTAAAATTTTAGTTGGTTCTTCAAGGTCATGCCAAT  1149
      |||||||||| | ||||||  ||||| |||||| |||||||||||||| |
seq2  TTTTTTCTGACT-AGTAAA--TTTAG-TGGTTC-TCAAGGTCATGCCAGT  1139

seq1  TAATAGCAAGGACACTCCATATATAATGAA----TCACTTTTACAGGTGG  1195
      ||  |||||||||||||| ||| |||||||     | |||||||||||||
seq2  TA--AGCAAGGACACTCC-TATTTAATGAAATCTACTCTTTTACAGGTGG  1186


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