BAC Information

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BAC

Clone NameB6Ng01-344F18
Chromosome4 (Build37)
Map Location 17,807,705 - 17,808,851
singlet/doubletsinglet
Overlap geneMmp16
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344F18.bB6Ng01-344F18.g
ACCGA126869GA126870
length1,1441,211
definitionB6Ng01-344F18.b B6Ng01-344F18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatttagagaatgcaatggaaaacgtatgtaattggtcagataa
caactcttgaggaaattccatagccgtatttcccaaggcaagatcaatga
tttggcagaattaaatcacataggaggtaggaagataagttttaaaaagt
attttgcagtttaataaatgtatttctacctcagtcacacttaggtgagg
agagctctcttagacagcttaccccaggagatacatctgcactctgaagt
ctgagatacagtgacacagcttagagaaaagttgacaagggagaggcatg
aacagaagattaaataccagtgcatgttgtcaatttagtgtcacttattt
tgtgactctgtagctgactgtgacttataatgtggttagtaaaaagattt
ttcccttttatacttaatctatgatgattatacaatgggaggaatagaac
aatgtcttccacagcaaatattacaatggtcagaggaacttcatttttat
ctataccttgaaactgcatttgtatctgttaacaatttaagaaaactaca
ttgcaaatagattagttcattttttaatggatgtcttgttctttacatta
agtaattgtatacattcttcctgcttttgttttttttttaaactggctta
aatataattaaaatgaaaaacaaaatgtgttacaaacatcaaaccctcta
attaatatcttcatggtttctctacatcttctaccctgaagtttacttgg
agggaaggagctccagtggaaagaatcatggaaatcaaaaaatccatgtt
cactttcctacttccacttctccctaaaagtgtagttcaggatgaatcac
atcttaggcatctctgacatacaaaacagaaaatctgtttctgattttaa
atacacccagagttctatggaagcctgctgccacatacaaactttaagtt
atagtaatatcatcaacagagacagcttagtttgactgattacatatcag
taagctattcatatggcaatgctgtcatatactaggagaagtagattgag
aaaaatattagtcaagtgatcagagaagaggagacaaagactcttcttta
gaaaggtattcctcttaattctcttgaaattattcttaaaagaa

gaattctcacctgaggaataccgaatggcagagaagcacctggaataatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaacagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagaaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
cttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatccagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggaactggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaat
aacagaagtggatgctcaacagtcagctaatggatggatcacagggctcc
caatggaagagctagaagaaagaacccaaggagctaaagggatcttgcaa
ccctatagtggaacaacattatgaactaaccagtacttcggaattcttga
ctctagcctgcatatgtaatcaaaagatgggcctagtgcattcactgcaa
agagaaggccaattgactcacaactttaatatgcctagttacaggacgct
agtctaaagggaagtggtgtggtcatggggaattgagtgcatgtctcaac
tatatagaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17807705_17808851
seq2: B6Ng01-344F18.b_50_1193 (reverse)

seq1  TTCTTTTAAGATTAATTTCAAAGAGATTAAAGAGGAATAACTTTCTAAAG  50
      ||||||||||| ||||||| |||||| | |||||||||| ||||||||||
seq2  TTCTTTTAAGAATAATTTC-AAGAGAATTAAGAGGAATACCTTTCTAAAG  49

seq1  AAGAGTC-TTGTCTCCTC-TCTCTGATTCACTTGACTTAATATTTTTCTC  98
      ||||||| |||||||||| ||||||| ||||||||| |||||||||||||
seq2  AAGAGTCTTTGTCTCCTCTTCTCTGA-TCACTTGAC-TAATATTTTTCTC  97

seq1  CATCTACTTCTCCTAGTATTATGACAGCATTGCCATATGAATAGCTTACT  148
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATCTACTTCTCCTAGTA-TATGACAGCATTGCCATATGAATAGCTTACT  146

seq1  GATATTGTAATCAGTCAAACTAAGCTGTCTCTGTTGATGATATTACTATA  198
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATA-TGTAATCAGTCAAACTAAGCTGTCTCTGTTGATGATATTACTATA  195

seq1  ACTTAAAGTTTGTATGTGGCAGCAGGCTTCCATAGAACTCTGGGTGTATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGTTTGTATGTGGCAGCAGGCTTCCATAGAACTCTGGGTGTATT  245

seq1  TAAAATCAGAAACAGATTTTCTGTTTTGTATGTCAGAGATGCTTAAGATG  298
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAAATCAGAAACAGATTTTCTGTTTTGTATGTCAGAGATGCCTAAGATG  295

seq1  TGATTCATCCTGAACTACACTTTTAGGGAGAAGTGGAAGTAGGAAAGTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATCCTGAACTACACTTTTAGGGAGAAGTGGAAGTAGGAAAGTGA  345

seq1  ACATGGATTTTTTGATTTCCATGATTCTTTCCACTGGAGCTCCTTCCCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATTTTTTGATTTCCATGATTCTTTCCACTGGAGCTCCTTCCCTC  395

seq1  CAAGTAAACTTCAGGGTAGAAGATGTAGAGAAACCATGAAGATATTAATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAACTTCAGGGTAGAAGATGTAGAGAAACCATGAAGATATTAATT  445

seq1  AGAGGGTTTGATGTTTGTAACACATTTTGTTTTTCATTTTAATTATATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTTGATGTTTGTAACACATTTTGTTTTTCATTTTAATTATATTT  495

seq1  AAGCCAGTTTAAAAAAAAAACAAAAGCAGGAAGAATGTATACAATTACTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTTTAAAAAAAAAACAAAAGCAGGAAGAATGTATACAATTACTT  545

seq1  AATGTAAAGAACAAGACATCCATTAAAAAATGAACTAATCTATTTGCAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAGAACAAGACATCCATTAAAAAATGAACTAATCTATTTGCAAT  595

seq1  GTAGTTTTCTTAAATTGTTAACAGATACAAATGCAGTTTCAAGGTATAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTCTTAAATTGTTAACAGATACAAATGCAGTTTCAAGGTATAGA  645

seq1  TAAAAATGAAGTTCCTCTGACCATTGTAATATTTGCTGTGGAAGACATTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGAAGTTCCTCTGACCATTGTAATATTTGCTGTGGAAGACATTG  695

seq1  TTCTATTCCTCCCATTGTATAATCATCATAGATTAAGTATAAAAGGGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCCTCCCATTGTATAATCATCATAGATTAAGTATAAAAGGGAAA  745

seq1  AATCTTTTTACTAACCACATTATAAGTCACAGTCAGCTACAGAGTCACAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTTACTAACCACATTATAAGTCACAGTCAGCTACAGAGTCACAA  795

seq1  AATAAGTGACACTAAATTGACAACATGCACTGGTATTTAATCTTCTGTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGACACTAAATTGACAACATGCACTGGTATTTAATCTTCTGTTC  845

seq1  ATGCCTCTCCCTTGTCAACTTTTCTCTAAGCTGTGTCACTGTATCTCAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTCCCTTGTCAACTTTTCTCTAAGCTGTGTCACTGTATCTCAGA  895

seq1  CTTCAGAGTGCAGATGTATCTCCTGGGGTAAGCTGTCTAAGAGAGCTCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGTGCAGATGTATCTCCTGGGGTAAGCTGTCTAAGAGAGCTCTC  945

seq1  CTCACCTAAGTGTGACTGAGGTAGAAATACATTTATTAAACTGCAAAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTAAGTGTGACTGAGGTAGAAATACATTTATTAAACTGCAAAATA  995

seq1  CTTTTTAAAACTTATCTTCCTACCTCCTATGTGATTTAATTCTGCCAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAACTTATCTTCCTACCTCCTATGTGATTTAATTCTGCCAAAT  1045

seq1  CATTGATCTTGCCTTGGGAAATACGGCTATGGAATTTCCTCAAGAGTTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATCTTGCCTTGGGAAATACGGCTATGGAATTTCCTCAAGAGTTGT  1095

seq1  TATCTGACCAATTACATACGTTTTCCATTGCATTCTCTAAATTGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACCAATTACATACGTTTTCCATTGCATTCTCTAAATTGAATTC  1144


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