BAC Information

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BAC

Clone NameB6Ng01-344J11
Chromosome4 (Build37)
Map Location 84,952,624 - 85,070,542
singlet/doubletdoublet
Overlap geneSh3gl2
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303
Downstream geneA930009N24, LOC668052, Adamtsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344J11.bB6Ng01-344J11.g
ACCGA127038GA127039
length1,1751,106
definitionB6Ng01-344J11.b B6Ng01-344J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,952,624 - 84,953,796)(85,069,440 - 85,070,542)
sequence
gaattcttaatgctacaaatattcctcatttaatgagaatcctttactcc
taaagcaatagccatggtcttcaagtcacctatagatctctcctgagtgg
attgtgaagtaacagaagtgtgcatcttggcccctggccttctaaacctt
attcctgaagttgtggcaaatacagtgtttataagctcatgcttttgaga
aagaaacacgctttgcacagtagagttaatggaagcctttaataaccaac
aagagtaactgtatggttatttaaagtgactgatgtgtcctggccggtac
cctatattagcttttctgtcaactaacatttatgcacttgcttttacttt
attataccaaccggtgacttctttcttttcagttttaagggaatagtgac
caaatatttcagattcctttgcatttattcttctacttttagataatttc
ccctgagggccagaacttcagtagccttaaactgcatcctttgcttttgt
taactatagacctagaagccttcaagaatattttttacaagtggccattt
gaaccaacatctctggataaagccatttctttgtttgaagaatacttgta
tgactgagatgtcaagattggacacatacacacgtgcacacacacaagtg
agtgtacacacatacacacacacacacacacatacacacacacacacaca
cacacacacacacacacacacactactgacttcctttaaggttgcttctg
tatagatgtgtttagttctgagtacttgctaccggataatctaacaggag
gggtcttctgggtaaaatggattcctcctctctcagtagtaagtaactac
ttgtaattcttcatctagggaaagggtctttgttaaatttccccatgaaa
tggggtgtgtgtgacttttattctacatttagttatatatttatttacat
ttacacagtctatacaggcaaataacaggatagtgcagttgccacttggg
aattagtggggttcctttttagatatttattttgtaagagcaccagttgc
agtaatagtacaaaggaacttgctgttttcttttggggctgatgaagcga
gcactacgtagaatgcttggataaggagtgttgagggagggagcagctcc
atggtgatttctgactggccactga
gaattctgtacaaggtggactgaaggaaggttgcaggtaggaggtttcgt
ttgtttctacttatactcagtatgggcccagggcatctttcccaaagtac
atctcctgtaatgtaatcttttctaatataattccataaagcctatagcc
agtaaatgctggttctctgcatatgcccacacacacattcagatactgaa
ttcctgtgatcctcaggatgacctctgagcatctcctcaggtcacaccac
ccaaggcacagagagcccaacccatgcctccaacaaagactctgattttt
catctgatggtgcccctctccagctttcccaacagctaagcaaacaacaa
tttcacaaggcctcagctgggacattgcacgctctggcttttatccctgt
ttgccttcatgtttggtcagtatctaatagggaaggaaacctagagtgac
agaatccacacaccccagtgggaagaggctctacaatagacatcaaatag
ctgtgcgagttcacacaactcatttatgttgttctcagtcacaaaaccag
gaattagagccaagtcttcttgagaatggtaataatggttccgtttacct
tcaaaaatcactgttattaaagagagcatccctcttaccccagagaagtt
gtctgtccatgaacatgcaccttattctgctaaataaaatcatcagctat
tttacttcattcgcaaagttgaccttggtttgagttcatggcattgacac
tgctttagccaagggaaggattacagctaagaggcagcattcccacaccc
aagttctattttatagcaacgcctgccagcttggctatgtttagcttaaa
ctatttctggatgtgtaacagttaatcacctcttccagtgaaaagttaaa
ataggagaaaatactagaaagaaaataacaaaattaaaaggcctgtgatc
acttcttggtgcccctgatcctcccagactcttcccattctccaggatcc
cctgctatccactgtgacagcgattatacatcttctggtgtctggaggct
cagagtcatcacctcctcagcacctggcaaagcgtcagcagtcagtgtca
agttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_84952624_84953796
seq2: B6Ng01-344J11.b_42_1216

seq1  GAATTCTTAATGCTACAAATATTCCTCATTTAATGAGAATCCTTTACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATGCTACAAATATTCCTCATTTAATGAGAATCCTTTACTCC  50

seq1  TAAAGCAATAGCCATGGTCTTCAAGTCACCTATAGATCTCTCCTGAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAATAGCCATGGTCTTCAAGTCACCTATAGATCTCTCCTGAGTGG  100

seq1  ATTGTGAAGTAACAGAAGTGTGCATCTTGGCCCCTGGCCTTCTAAACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAAGTAACAGAAGTGTGCATCTTGGCCCCTGGCCTTCTAAACCTT  150

seq1  ATTCCTGAAGTTGTGGCAAATACAGTGTTTATAAGCTCATGCTTTTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGAAGTTGTGGCAAATACAGTGTTTATAAGCTCATGCTTTTGAGA  200

seq1  AAGAAACACGCTTTGCACAGTAGAGTTAATGGAAGCCTTTAATAACCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACACGCTTTGCACAGTAGAGTTAATGGAAGCCTTTAATAACCAAC  250

seq1  AAGAGTAACTGTATGGTTATTTAAAGTGACTGATGTGTCCTGGCCGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAACTGTATGGTTATTTAAAGTGACTGATGTGTCCTGGCCGGTAC  300

seq1  CCTATATTAGCTTTTCTGTCAACTAACATTTATGCACTTGCTTTTACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATTAGCTTTTCTGTCAACTAACATTTATGCACTTGCTTTTACTTT  350

seq1  ATTATACCAACCGGTGACTTCTTTCTTTTCAGTTTTAAGGGAATAGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACCAACCGGTGACTTCTTTCTTTTCAGTTTTAAGGGAATAGTGAC  400

seq1  CAAATATTTCAGATTCCTTTGCATTTATTCTTCTACTTTTAGATAATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTCAGATTCCTTTGCATTTATTCTTCTACTTTTAGATAATTTC  450

seq1  CCCTGAGGGCCAGAACTTCAGTAGCCTTAAACTGCATCCTTTGCTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGGGCCAGAACTTCAGTAGCCTTAAACTGCATCCTTTGCTTTTGT  500

seq1  TAACTATAGACCTAGAAGCCTTCAAGAATATTTTTTACAAGTGGCCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATAGACCTAGAAGCCTTCAAGAATATTTTTTACAAGTGGCCATTT  550

seq1  GAACCAACATCTCTGGATAAAGCCATTTCTTTGTTTGAAGAATACTTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAACATCTCTGGATAAAGCCATTTCTTTGTTTGAAGAATACTTGTA  600

seq1  TGACTGAGATGTCAAGATTGGACACATACACACGTGCACACACACAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGATGTCAAGATTGGACACATACACACGTGCACACACACAAGTG  650

seq1  AGTGTACACACATACACACACACACACACACACATACACACACACACACA  700
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  AGTGTACACACAT--ACACACACACACACACACATACACACACACACACA  698

seq1  CACACACACACACACACACACACACTACTGACTTCCTTTAAGGTTGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACTACTGACTTCCTTTAAGGTTGCTTC  748

seq1  TGTATAGATGTGTTTAGTTCTGAGTACTTGCTACCGGATAATCTAACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGATGTGTTTAGTTCTGAGTACTTGCTACCGGATAATCTAACAGG  798

seq1  AGGGGTCTTCTGGGTAAAATGGATTCCTCCTCTCTCAGTAGTAAGTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCTTCTGGGTAAAATGGATTCCTCCTCTCTCAGTAGTAAGTAACT  848

seq1  ACTTGTAATTCTTCATCTAGGGAAAGGGTCTTTGTTAAATTTCCCCATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAATTCTTCATCTAGGGAAAGGGTCTTTGTTAAATTTCCCCATGA  898

seq1  AATGGGGTGTGTGTGACTTTTATTCTACATTTAGTTATATATTTATTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGTGTGTGTGACTTTTATTCTACATTTAGTTATATATTTATTTAC  948

seq1  ATTTACAACAGTCTATACAGGCAAATAACAGGATAGTGCAGTTGCCACTT  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAC-ACAGTCTATACAGGCAAATAACAGGATAGTGCAGTTGCCACTT  997

seq1  GGGAATTAGT-GGGTTCCTTTTTAGATA-TTATTTTGTAAGAGCA-CAGT  1047
      |||||||||| ||||||||||||||||| |||||||||||||||| ||||
seq2  GGGAATTAGTGGGGTTCCTTTTTAGATATTTATTTTGTAAGAGCACCAGT  1047

seq1  TGCAGTAATAGTAACAAAGGAAC-TGCTGTTTTCTATT-GGGCTGATGAA  1095
      |||||||||||| |||||||||| ||||||||||| || |||||||||||
seq2  TGCAGTAATAGT-ACAAAGGAACTTGCTGTTTTCTTTTGGGGCTGATGAA  1096

seq1  GCGAGCACTACGTAGAATGCTTGATAAAGGAAGTGTTGAGGGA-GGAGCA  1144
      |||||||||||||||||||||||   |||| |||||||||||| ||||||
seq2  GCGAGCACTACGTAGAATGCTTGGATAAGG-AGTGTTGAGGGAGGGAGCA  1145

seq1  GCTCAAT-GTGATTTCTGAACTGG-CACTGA  1173
      |||| || |||||||||| ||||| ||||||
seq2  GCTCCATGGTGATTTCTG-ACTGGCCACTGA  1175

seq1: chr4_85069440_85070542
seq2: B6Ng01-344J11.g_66_1171 (reverse)

seq1  ACAACTTG----GAACTGCTGACGCTTTGCCA-GTGCTGAG--AGTGATG  43
      ||||||||      |||||||||||||||||| ||||||||   ||||| 
seq2  ACAACTTGACACTGACTGCTGACGCTTTGCCAGGTGCTGAGGAGGTGAT-  49

seq1  GACTCCTGAGCCTCCAGACA-CAG-AGATGTATAATCGCTGTCACAGT-G  90
      |||| ||||||||||||||| ||| ||||||||||||||||||||||| |
seq2  GACT-CTGAGCCTCCAGACACCAGAAGATGTATAATCGCTGTCACAGTGG  98

seq1  ATAGCAGGGGGATCCTGGAGAATGGGGAAGAGTCTGGGAGGATTCAGGGG  140
      |||||| |||||||||||||||| |||||||||||||||||| |||||||
seq2  ATAGCA-GGGGATCCTGGAGAAT-GGGAAGAGTCTGGGAGGA-TCAGGGG  145

seq1  CACCAAGAAGTGATCACAGGCCTTTTAATTTTGTTATTTTTCTTTTCTAG  190
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  CACCAAGAAGTGATCACAGGCCTTTTAATTTTGTTATTTT--CTTTCTAG  193

seq1  TATTTTCTCCTATTTTAACTTTTCACTGGAAGAGGTGATTAACTGTTACA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCCTATTTTAACTTTTCACTGGAAGAGGTGATTAACTGTTACA  243

seq1  CATCCAGAAATAGTTTAAGCTAAACATAGCCAAGCTGGCAGGCGTTGCTA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGAAATAGTTTAAGCTAAACATAGCCAAGCTGGCAGGCGTTGCTA  293

seq1  TAAAATAGAACTTGGGTGTGGGAATGCTGCCTCTTAGCTGTAATCCTTCC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGAACTTGGGTGTGGGAATGCTGCCTCTTAGCTGTAATCCTTCC  343

seq1  CTTGGCTAAAGCAGTGTCAATGCCATGAACTCAAACCAAGGTCAACTTTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTAAAGCAGTGTCAATGCCATGAACTCAAACCAAGGTCAACTTTG  393

seq1  CGAATGAAGTAAAATAGCTGATGATTTTATTTAGCAGAATAAGGTGCATG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGAAGTAAAATAGCTGATGATTTTATTTAGCAGAATAAGGTGCATG  443

seq1  TTCATGGACAGACAACTTCTCTGGGGTAAGAGGGATGCTCTCTTTAATAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGACAGACAACTTCTCTGGGGTAAGAGGGATGCTCTCTTTAATAA  493

seq1  CAGTGATTTTTGAAGGTAAACGGAACCATTATTACCATTCTCAAGAAGAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATTTTTGAAGGTAAACGGAACCATTATTACCATTCTCAAGAAGAC  543

seq1  TTGGCTCTAATTCCTGGTTTTGTGACTGAGAACAACATAAATGAGTTGTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTAATTCCTGGTTTTGTGACTGAGAACAACATAAATGAGTTGTG  593

seq1  TGAACTCGCACAGCTATTTGATGTCTATTGTAGAGCCTCTTCCCACTGGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCGCACAGCTATTTGATGTCTATTGTAGAGCCTCTTCCCACTGGG  643

seq1  GTGTGTGGATTCTGTCACTCTAGGTTTCCTTCCCTATTAGATACTGACCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGATTCTGTCACTCTAGGTTTCCTTCCCTATTAGATACTGACCA  693

seq1  AACATGAAGGCAAACAGGGATAAAAGCCAGAGCGTGCAATGTCCCAGCTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAGGCAAACAGGGATAAAAGCCAGAGCGTGCAATGTCCCAGCTG  743

seq1  AGGCCTTGTGAAATTGTTGTTTGCTTAGCTGTTGGGAAAGCTGGAGAGGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGTGAAATTGTTGTTTGCTTAGCTGTTGGGAAAGCTGGAGAGGG  793

seq1  GCACCATCAGATGAAAAATCAGAGTCTTTGTTGGAGGCATGGGTTGGGCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATCAGATGAAAAATCAGAGTCTTTGTTGGAGGCATGGGTTGGGCT  843

seq1  CTCTGTGCCTTGGGTGGTGTGACCTGAGGAGATGCTCAGAGGTCATCCTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCCTTGGGTGGTGTGACCTGAGGAGATGCTCAGAGGTCATCCTG  893

seq1  AGGATCACAGGAATTCAGTATCTGAATGTGTGTGTGGGCATATGCAGAGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCACAGGAATTCAGTATCTGAATGTGTGTGTGGGCATATGCAGAGA  943

seq1  ACCAGCATTTACTGGCTATAGGCTTTATGGAATTATATTAGAAAAGATTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCATTTACTGGCTATAGGCTTTATGGAATTATATTAGAAAAGATTA  993

seq1  CATTACAGGAGATGTACTTTGGGAAAGATGCCCTGGGCCCATACTGAGTA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGGAGATGTACTTTGGGAAAGATGCCCTGGGCCCATACTGAGTA  1043

seq1  TAAGTAGAAACAAACGAAACCTCCTACCTGCAACCTTCCTTCAGTCCACC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGAAACAAACGAAACCTCCTACCTGCAACCTTCCTTCAGTCCACC  1093

seq1  TTGTACAGAATTC  1103
      |||||||||||||
seq2  TTGTACAGAATTC  1106