BAC Information

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BAC

Clone NameB6Ng01-345C08
Chromosome4 (Build37)
Map Location 8,615,611 - 8,737,032
singlet/doubletdoublet
Overlap geneChd7
Upstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760
Downstream geneLOC666782, LOC100039584, 4933402J24Rik, Asph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345C08.bB6Ng01-345C08.g
ACCGA127438GA127439
length1,117485
definitionB6Ng01-345C08.b B6Ng01-345C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,735,910 - 8,737,032)(8,615,611 - 8,616,101)
sequence
gaattcactaaagacatctcctttgtccatcctccagcagcccacagtac
cagtgtgcagaaacttccatactctgcagactcaatgaatgatagggtga
taacgcacagcttcacatacgcacacacacaaacactgagatcactcctt
ggccagctactgtctaacctgacagtgctctgagtattttcatgagttca
atagacatttgaaaatgggtattcttttccttccccaggaatgaatgtaa
aggaatcataacaggttacaggaaacctgatgttttggctatattaacat
atttgtctcactgttcatgtgaccaaggagccaagcctagttctctaacg
tggcctgaaacagccgttagcacatgataacctgcaccctcaaggaaaga
atagccttgctaaattagacagctcttctactcaaaactatacaaataat
gaacaaaaaatgaaaaagtatacagagaagaataataaactgcttctggt
ctaatatatttcatactcaaacagagatagtgagttacagagtactgagt
gagaaaataaagatattctggagactatagttaagactttaactttataa
aatgttctattttttattgttatgttcaattatcctggaatctaatataa
ctccttatggagaaaacatatgttaaataaagaaaaataaatgttagggg
atagtatctctcctgtgtatatagtacacccagattctgactctaagata
acttctgaccttatgattctaaaaggaaaagggcttggattattttctat
agatagatggcatataggaagtgctataactaaatatggaaaacaaaaca
cctatgcactctaaatatctacacacacattcaaacatacctcaatgttc
atatacaagacccctctcctgggtcttggggacattaacttgtgtttagg
acatatttaaatgcccaagccacgccactgtcatggtgtgtgaagctgag
gtggctctccctgggagacattcttaaattattcatagtagaggagcaca
gctagagtccacagaaaatatcaatttcctttttcttaccacgtgcatat
gtcccttgttattcatt

aaatgattctctttgggaaaacttcaagaaagaagcaaacggagagaaga
gtgttccaggcttagggtagtggggggtgggtgggagctgaggcttatcc
ggtacaaagctgcctaggtctgcgcctgagggtcttcgggttttcaaggc
ccttggagttctgcaccagcagaacctctgaaagcctggacttctaaccc
ggacttcccggataaggaggatattaagtcagggaggggagatgtggctg
atatgtcccacactgactgtgtttatctttggcacattacaaaagttagt
gtcccaacgtcctagtgaaatcacaaggacacaacaggagacctccacat
agtcacttggagcctaaacgttatactttcttttttatgtagaggtcata
ttatttcgcttgtaagttgtcttgaaatagatgcgagtctgacaagtgag
attcccccccaagtatctatgataggtttactttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8735910_8737032
seq2: B6Ng01-345C08.b_45_1161 (reverse)

seq1  AATG-ATAACAGGGGACAATATTGCACGTGGAAAGAAAAAGAAATTTGAT  49
      |||| |||||| ||||| ||| ||||||||| ||||||||| || |||||
seq2  AATGAATAACAAGGGAC-ATA-TGCACGTGGTAAGAAAAAGGAAATTGAT  48

seq1  ATTTTCCTGTGGACTCTAGCTGTGCTTCCTCTTACTATGAATAATTTAAG  99
      ||||| ||||||||||||||||||| ||||| ||||||||||||||||||
seq2  ATTTT-CTGTGGACTCTAGCTGTGC-TCCTC-TACTATGAATAATTTAAG  95

seq1  AATTGTCTCCCAGGGAGAGCCACCTCAGCTTCACACACCATGACAGTGGG  149
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AA-TGTCTCCCAGGGAGAGCCACCTCAGCTTCACACACCATGACAGT-GG  143

seq1  CGTGGCTT-GGCATTTAAATATTGTCCTAAACACAAGTTAATGTCCCCAA  198
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  CGTGGCTTGGGCATTTAAATA-TGTCCTAAACACAAGTTAATGTCCCCAA  192

seq1  GACCCAGGAGAGGGGTCTTGTATATGAACATTGAGGTATGTTTGAATGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGAGAGGGGTCTTGTATATGAACATTGAGGTATGTTTGAATGTG  242

seq1  TGTGTAGATATTTAGAGTGCATAGGTGTTTTGTTTTCCATATTTAGTTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGATATTTAGAGTGCATAGGTGTTTTGTTTTCCATATTTAGTTAT  292

seq1  AGCACTTCCTATATGCCATCTATCTATAGAAAATAATCCAAGCCCTTTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTCCTATATGCCATCTATCTATAGAAAATAATCCAAGCCCTTTTC  342

seq1  CTTTTAGAATCATAAGGTCAGAAGTTATCTTAGAGTCAGAATCTGGGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAATCATAAGGTCAGAAGTTATCTTAGAGTCAGAATCTGGGTGT  392

seq1  ACTATATACACAGGAGAGATACTATCCCCTAACATTTATTTTTCTTTATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATACACAGGAGAGATACTATCCCCTAACATTTATTTTTCTTTATT  442

seq1  TAACATATGTTTTCTCCATAAGGAGTTATATTAGATTCCAGGATAATTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATGTTTTCTCCATAAGGAGTTATATTAGATTCCAGGATAATTGA  492

seq1  ACATAACAATAAAAAATAGAACATTTTATAAAGTTAAAGTCTTAACTATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAATAAAAAATAGAACATTTTATAAAGTTAAAGTCTTAACTATA  542

seq1  GTCTCCAGAATATCTTTATTTTCTCACTCAGTACTCTGTAACTCACTATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGAATATCTTTATTTTCTCACTCAGTACTCTGTAACTCACTATC  592

seq1  TCTGTTTGAGTATGAAATATATTAGACCAGAAGCAGTTTATTATTCTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTGAGTATGAAATATATTAGACCAGAAGCAGTTTATTATTCTTCT  642

seq1  CTGTATACTTTTTCATTTTTTGTTCATTATTTGTATAGTTTTGAGTAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATACTTTTTCATTTTTTGTTCATTATTTGTATAGTTTTGAGTAGAA  692

seq1  GAGCTGTCTAATTTAGCAAGGCTATTCTTTCCTTGAGGGTGCAGGTTATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTCTAATTTAGCAAGGCTATTCTTTCCTTGAGGGTGCAGGTTATC  742

seq1  ATGTGCTAACGGCTGTTTCAGGCCACGTTAGAGAACTAGGCTTGGCTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTAACGGCTGTTTCAGGCCACGTTAGAGAACTAGGCTTGGCTCCT  792

seq1  TGGTCACATGAACAGTGAGACAAATATGTTAATATAGCCAAAACATCAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACATGAACAGTGAGACAAATATGTTAATATAGCCAAAACATCAGG  842

seq1  TTTCCTGTAACCTGTTATGATTCCTTTACATTCATTCCTGGGGAAGGAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTAACCTGTTATGATTCCTTTACATTCATTCCTGGGGAAGGAAA  892

seq1  AGAATACCCATTTTCAAATGTCTATTGAACTCATGAAAATACTCAGAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACCCATTTTCAAATGTCTATTGAACTCATGAAAATACTCAGAGCA  942

seq1  CTGTCAGGTTAGACAGTAGCTGGCCAAGGAGTGATCTCAGTGTTTGTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGTTAGACAGTAGCTGGCCAAGGAGTGATCTCAGTGTTTGTGTG  992

seq1  TGTGCGTATGTGAAGCTGTGCGTTATCACCCTATCATTCATTGAGTCTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTATGTGAAGCTGTGCGTTATCACCCTATCATTCATTGAGTCTGC  1042

seq1  AGAGTATGGAAGTTTCTGCACACTGGTACTGTGGGCTGCTGGAGGATGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGGAAGTTTCTGCACACTGGTACTGTGGGCTGCTGGAGGATGGA  1092

seq1  CAAAGGAGATGTCTTTAGTGAATTC  1123
      |||||||||||||||||||||||||
seq2  CAAAGGAGATGTCTTTAGTGAATTC  1117


seq1: chr4_8615611_8616101
seq2: B6Ng01-345C08.g_67_557

seq1  GAATTCAAATGATTCTCTTTGGGAAAACTTCAAGAAAGAAGCAAACGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGATTCTCTTTGGGAAAACTTCAAGAAAGAAGCAAACGGAG  50

seq1  AGAAGAGTGTTCCAGGCTTAGGGTAGTGGGGGGTGGGTGGGAGCTGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTGTTCCAGGCTTAGGGTAGTGGGGGGTGGGTGGGAGCTGAGGC  100

seq1  TTAGCCGGTACAAAGCTGCCTAGGTCTGCGCCTGAGGGTCTTCGGGTTTT  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCGGTACAAAGCTGCCTAGGTCTGCGCCTGAGGGTCTTCGGGTTTT  150

seq1  CAAGGCCCTTGGAGTTCTGCACCAGCAGAACCTCTGAAAGCCTGGACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCCTTGGAGTTCTGCACCAGCAGAACCTCTGAAAGCCTGGACTTC  200

seq1  TAACCCGGACTTCCCGGATAAGGAGGATATTAAGTCAGGGAGGGGAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCGGACTTCCCGGATAAGGAGGATATTAAGTCAGGGAGGGGAGATG  250

seq1  TGGCTGATATGTCCCACACTGACTGTGTTTATCTTTGGCACATTACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATATGTCCCACACTGACTGTGTTTATCTTTGGCACATTACAAAA  300

seq1  GTTAGTGTCCCAACGTCCTAGTGAAATACACAAGGACACAACAGGAGACC  350
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTAGTGTCCCAACGTCCTAGTGAAAT-CACAAGGACACAACAGGAGACC  349

seq1  TCCACATAGTCACTTGGAGCCTAAACGTTATACTTTC-ATTAAATGTAGA  399
      |||||||||||||||||||||||||||||||||||||  ||  |||||||
seq2  TCCACATAGTCACTTGGAGCCTAAACGTTATACTTTCTTTTTTATGTAGA  399

seq1  GGTCATATTATTTAGCTTGTAAGTTGTCTTGAAATAGATGCGAGTCTGAC  449
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTCATATTATTTCGCTTGTAAGTTGTCTTGAAATAGATGCGAGTCTGAC  449

seq1  AAGTGAGATTCCCCCCCAAGTATCTATGATAGTTTTACTTTG  491
      |||||||||||||||||||||||||||||||| |||||||||
seq2  AAGTGAGATTCCCCCCCAAGTATCTATGATAGGTTTACTTTG  491


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