BAC Information

Click to search

BAC

Clone NameB6Ng01-345C15
Chromosome4 (Build37)
Map Location 45,195,818 - 45,358,369
singlet/doubletdoublet
Overlap geneFrmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32
Upstream geneMelk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik
Downstream geneMcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345C15.bB6Ng01-345C15.g
ACCGA127450GA127451
length1,0911,082
definitionB6Ng01-345C15.b B6Ng01-345C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,195,818 - 45,196,897)(45,357,298 - 45,358,369)
sequence
gaattcaagatgaagagaaaaagaacagacctggaaggagatcgggatag
tgatggctagtgaatatggtcagagggtacgatgatgtccttgatggcat
ctatgaagcctggcacactgaatacattctaataaaattaaggaaaagaa
ttgttccacaagggtgaaaggaggaaaacagccttaaggcaaagagtgcc
tggcactgtgggacccaccagaacggcagatgtagggagaaacagtgcag
caggctgtcagggatgagcgtgcaggggggcatcccacgcagagcagagc
ctctgaagccaatgacggccctgtgtgaaacattatcgacccaggcagct
aggaaactgtgagggacaggatctgacctgatgggaaatttttgttcttg
ctgacaacagggctgggttcttattttcctgtgtgacaagtgccccattg
gtgtttaatctggattgtgcacataatctccatccacggtacagtctttc
agtttactgtaaatcgtcagttcataagctattgcgaaatatatttaatt
ttcttaaagctgactttatacccaccatgcttctgtatcttccgtttctt
cccacttcccccagtggtgctaaccctgggtcctactactggaggctagg
gacctggtgggtgctggagtttctgtcttcatcaggccaagggctgacct
gttgctttgcccacttgtcactggattaaggatcttgtctgtgctcattt
gattcccagagtggtctaatttgatatctggtggcaacaagattgccacc
ttctatccttaaaactcctccttcccatgatagctaaggatagcacggaa
tactgaccaggaactgcctcctctaactcttcaattctgctccctttctg
ctcctgtttcagtgaaagctgcgattatcctgagagctttgttctggtcc
tctgggatgcttttccacactctagtttggcccaactttcagttgtggtt
caagaggcaaccccctttcagtaagccgggaatggtgctacgggcacggg
atcaacactttattctaatcggctaggacttgactaggaaa
gaattccagaagattaagacaggaagatctctgagttcaaggtcatctgg
gattaaaggtgtggtggcacacacctttaatctgggccataccttctgct
ggagagtttggacattgaaagaaggaagattttattctctcctttgcctg
cttgccttgtgggactgagcaactgctagatccttggacttccattcaca
gctgctgctgaccattgttgggggttggactgctgactgtaagtcatcaa
caaattcctttactatatagagacgacccataagttctgcagctctagag
aaccctgactaatacagccagcctggtctacaatgagttccaggacagcc
agggctacacaaagaaaccctgtctggaaaaaaaaaaaaatccaaacaaa
ataaagtaaaaacaactttattttcaggtcagtgagatagctcagtggat
aacagtgattgcagctgagcctagagacctgagtgtgatccccggtttaa
ggagagagagaactaacttcttcgaattgccctctgacccttcacacaca
caactaaataaatgtaaccaaaccaaacctttatgctgtatgtcctaccg
tttcactttcttcagatttacatttatattatttgtaaataaatttaact
ctttttccttgtgatagtttgcacattaatttcccatcactttccactta
gctagtttaataatgttatatgtattctatctacttatgcatgcaatcat
gtttgtgggcacacgtgtgctcacagtgcacatgtggaggtcagaaaact
cattagaagtttctcttcttttccagcatgtggactctggagatcaatct
tcaggtttgtgagtcttaatttacactaactcactgacctatctagtaac
tcccatttttactaatgtaaaaagatgcagagtgagatgctagctttaaa
aatcaaaataggtactgggaagatctgttccaagtattgagtgtgtgagc
ttgatgcccaccatcacataaaaggcttgtattagctgtagttggacagt
tgaactttgtgagattattggggagaaatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45195818_45196897
seq2: B6Ng01-345C15.b_46_1136

seq1  GAATTCAAGATGAAGAGAAAAAGAACAGACCTGGAAGGAGATCGGGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATGAAGAGAAAAAGAACAGACCTGGAAGGAGATCGGGATAG  50

seq1  TGATGGCTAGTGAATATGGTCAGAGGGTACGATGATGTCCTTGATGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTAGTGAATATGGTCAGAGGGTACGATGATGTCCTTGATGGCAT  100

seq1  CTATGAAGCCTGGCACACTGAATACATTCTAATAAAATTAAGGAAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAGCCTGGCACACTGAATACATTCTAATAAAATTAAGGAAAAGAA  150

seq1  TTGTTCCACAAGGGTGAAAGGAGGAAAACAGCCTTAAGGCAAAGAGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCACAAGGGTGAAAGGAGGAAAACAGCCTTAAGGCAAAGAGTGCC  200

seq1  TGGCACTGTGGGACCCACCAGAACGGCAGATGTAGGGAGAAACAGTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGTGGGACCCACCAGAACGGCAGATGTAGGGAGAAACAGTGCAG  250

seq1  CAGGCTGTCAGGGATGAGCGTGCAGGGGGGCATCCCACGCAGAGCAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTCAGGGATGAGCGTGCAGGGGGGCATCCCACGCAGAGCAGAGC  300

seq1  CTCTGAAGCCAATGACGGCCCTGTGTGAAACATTATCGACCCAGGCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGCCAATGACGGCCCTGTGTGAAACATTATCGACCCAGGCAGCT  350

seq1  AGGAAACTGTGAGGGACAGGATCTGACCTGATGGGAAATTTTTGTTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTGTGAGGGACAGGATCTGACCTGATGGGAAATTTTTGTTCTTG  400

seq1  CTGACAACAGGGCTGGGTTCTTATTTTCCTGTGTGACAAGTGCCCCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAACAGGGCTGGGTTCTTATTTTCCTGTGTGACAAGTGCCCCATTG  450

seq1  GTGTTTAATCTGGATTGTGCACATAATCTCCATCCACGGTACAGTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAATCTGGATTGTGCACATAATCTCCATCCACGGTACAGTCTTTC  500

seq1  AGTTTACTGTAAATCGTCAGTTCATAAGCTATTGCGAAATATATTTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTGTAAATCGTCAGTTCATAAGCTATTGCGAAATATATTTAATT  550

seq1  TTCTTAAAGCTGACTTTATACCCACCATGCTTCTGTATCTTCCGTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAGCTGACTTTATACCCACCATGCTTCTGTATCTTCCGTTTCTT  600

seq1  CCCACTTCCCCCAGTGGTGCTAACCCTGGGTCCTACTACTGGAGGCTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCCCCCAGTGGTGCTAACCCTGGGTCCTACTACTGGAGGCTAGG  650

seq1  GACCTGGTGGGTGCTGGAGTTTCTGTCTTCATCAGGCCAAGGGCTGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTGGGTGCTGGAGTTTCTGTCTTCATCAGGCCAAGGGCTGACCT  700

seq1  GTTGCTTTGCCCACTTGTCACTGGATTAAGGATCTTGTCTGTGCTCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTGCCCACTTGTCACTGGATTAAGGATCTTGTCTGTGCTCATTT  750

seq1  GATTCCCAGAGTGGTCTAATTTGATAATCTGGTGGCAACAAGATTGCCAC  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATTCCCAGAGTGGTCTAATTTGAT-ATCTGGTGGCAACAAGATTGCCAC  799

seq1  CTTCTATCCTTAAAACTCCTCC-TCCCATGATAGCTAAGGATAGCACGGA  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTCTATCCTTAAAACTCCTCCTTCCCATGATAGCTAAGGATAGCACGGA  849

seq1  ATACTGACCAGGAACTGCCTCCTCTAACTCTTCAATTCTGCTCCCTTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACCAGGAACTGCCTCCTCTAACTCTTCAATTCTGCTCCCTTTCT  899

seq1  GCTCCTGTTTCAGTGAAAGCTGCGA-TATCCTGAGAGCTTTGTTCTGGTC  948
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCTCCTGTTTCAGTGAAAGCTGCGATTATCCTGAGAGCTTTGTTCTGGTC  949

seq1  CTCTGGAATGCTTTCCCACACTCTAGTT--GGCCAAC-TCCAGTTGTTGT  995
      |||||| ||||||| |||||||||||||  | ||||| | ||||||| ||
seq2  CTCTGGGATGCTTTTCCACACTCTAGTTTGGCCCAACTTTCAGTTGTGGT  999

seq1  TC-AGAGGCA--CCCCCTTCAGTAGGC--GGGATGGTGCTACGGGCACCG  1040
      || |||||||  |||| ||||||| ||  || |||||||||||||||| |
seq2  TCAAGAGGCAACCCCCTTTCAGTAAGCCGGGAATGGTGCTACGGGCACGG  1049

seq1  GATCAGCACTTTATTC-AATCGGCTA-GACTGTACTAGGAAA  1080
      ||||| |||||||||| ||||||||| ||||  |||||||||
seq2  GATCAACACTTTATTCTAATCGGCTAGGACTTGACTAGGAAA  1091

seq1: chr4_45357298_45358369
seq2: B6Ng01-345C15.g_65_1146 (reverse)

seq1  CACATTTCT-CCCATTATTCTCAC-AAGGTCACCTGTCCAAACTACAGCT  48
      ||||||||| |||| || |||||| ||| ||| |||||| ||||||||||
seq2  CACATTTCTCCCCAATAATCTCACAAAGTTCAACTGTCC-AACTACAGCT  49

seq1  AATACCAAGCTTTTTATGTGGATGGTGGGCATCCAAGCTCACACACTC-A  97
      |||| ||||| |||||||| |||||||||||| ||||||||||||||| |
seq2  AATA-CAAGCCTTTTATGT-GATGGTGGGCAT-CAAGCTCACACACTCAA  96

seq1  TACTTGG-ACAGATCTTCCCAGTACCTATTTTG-TTTTTAAAGCTAGCAT  145
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  TACTTGGAACAGATCTTCCCAGTACCTATTTTGATTTTTAAAGCTAGCAT  146

seq1  CTCACTCTGCATC-TTTTACATTAGTAAAA--TGGAGTTACTAAGATAGG  192
      ||||||||||||| ||||||||||||||||   ||||||||| |||||||
seq2  CTCACTCTGCATCTTTTTACATTAGTAAAAATGGGAGTTACT-AGATAGG  195

seq1  TCAGTGGGTTAGTTGTAATTAAGACTCAC-AACCTG-AGATTGATCTCCA  240
      |||||| ||||||   ||||||||||||| |||||| |||||||||||||
seq2  TCAGTGAGTTAGTGTAAATTAAGACTCACAAACCTGAAGATTGATCTCCA  245

seq1  GAGTCCACATGCTGGAAA--GAGAG-AACTTCTAATG-GTTTTCTGACCT  286
      ||||||||||||||||||   |||| ||||||||||| ||||||||||||
seq2  GAGTCCACATGCTGGAAAAGAAGAGAAACTTCTAATGAGTTTTCTGACCT  295

seq1  CCACATGTGCACTGTG-GCACACGTGTGCCCACAAACATGATTGCATGCA  335
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCACATGTGCACTGTGAGCACACGTGTGCCCACAAACATGATTGCATGCA  345

seq1  TAAGTAGATAGAATACATATAACATTATTAAACTAGCTAAGTGGAAAGTG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGATAGAATACATATAACATTATTAAACTAGCTAAGTGGAAAGTG  395

seq1  ATGGGAAATTAATGTGCAAACTATCACAAGGAAAAAGAGTTAAATTTATT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAATTAATGTGCAAACTATCACAAGGAAAAAGAGTTAAATTTATT  445

seq1  TACAAATAATATAAATGTAAATCTGAAGAAAGTGAAACGGTAGGACATAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAATATAAATGTAAATCTGAAGAAAGTGAAACGGTAGGACATAC  495

seq1  AGCATAAAGGTTTGGTTTGGTTACATTTATTTAGTTGTGTGTGTGAAGGG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAAGGTTTGGTTTGGTTACATTTATTTAGTTGTGTGTGTGAAGGG  545

seq1  TCAGAGGGCAATTCGAAGAAGTTAGTTCTCTCTCTCCTTAAACCGGGGAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGCAATTCGAAGAAGTTAGTTCTCTCTCTCCTTAAACCGGGGAT  595

seq1  CACACTCAGGTCTCTAGGCTCAGCTGCAATCACTGTTATCCACTGAGCTA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCAGGTCTCTAGGCTCAGCTGCAATCACTGTTATCCACTGAGCTA  645

seq1  TCTCACTGACCTGAAAATAAAGTTGTTTTTACTTTATTTTGTTTGGATTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGACCTGAAAATAAAGTTGTTTTTACTTTATTTTGTTTGGATTT  695

seq1  TTTTTTTTTTCCAGACAGGGTTTCTTTGTGTAGCCCTGGCTGTCCTGGAA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCCAGACAGGGTTTCTTTGTGTAGCCCTGGCTGTCCTGGAA  745

seq1  CTCATTGTAGACCAGGCTGGCTGTATTAGTCAGGGTTCTCTAGAGCTGCA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGTAGACCAGGCTGGCTGTATTAGTCAGGGTTCTCTAGAGCTGCA  795

seq1  GAACTTATGGGTCGTCTCTATATAGTAAAGGAATTTGTTGATGACTTACA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTATGGGTCGTCTCTATATAGTAAAGGAATTTGTTGATGACTTACA  845

seq1  GTCAGCAGTCCAACCCCCAACAATGGTCAGCAGCAGCTGTGAATGGAAGT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGTCCAACCCCCAACAATGGTCAGCAGCAGCTGTGAATGGAAGT  895

seq1  CCAAGGATCTAGCAGTTGCTCAGTCCCACAAGGCAAGCAGGCAAAGGAGA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATCTAGCAGTTGCTCAGTCCCACAAGGCAAGCAGGCAAAGGAGA  945

seq1  GAATAAAATCTTCCTTCTTTCAATGTCCAAACTCTCCAGCAGAAGGTATG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATCTTCCTTCTTTCAATGTCCAAACTCTCCAGCAGAAGGTATG  995

seq1  GCCCAGATTAAAGGTGTGTGCCACCACACCTTTAATCCCAGATGACCTTG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATTAAAGGTGTGTGCCACCACACCTTTAATCCCAGATGACCTTG  1045

seq1  AACTCAGAGATCTTCCTGTCTTAATCTTCTGGAATTC  1072
      |||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGATCTTCCTGTCTTAATCTTCTGGAATTC  1082