BAC Information

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BAC

Clone NameB6Ng01-345E05
Chromosome4 (Build37)
Map Location 82,470,576 - 82,575,236
singlet/doubletdoublet
Overlap geneZdhhc21, Cer1, Frem1
Upstream geneEG668895, LOC100040164, EG545641, Nfib
Downstream geneLOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345E05.bB6Ng01-345E05.g
ACCGA127517GA127518
length1,136536
definitionB6Ng01-345E05.b B6Ng01-345E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,470,576 - 82,471,705)(82,574,695 - 82,575,236)
sequence
gaattccattaggaagttcacaaacatggacagcagtatttctagcaaca
caaccaagtaagccataggcaccgaaaggaaagggaatcaagaaaggctg
cctaatgggagtattactgggaataatgtatttgtccatcaaaagaaaaa
atacattattttaagtgagatgttatgaatatttatagcaaaagtcacac
agtatatattaaccatacttaaaaaaattgtctttcaaattctgcccata
tagccctggatagttcactggcctgtatatgtatactttaatatttgtgc
actcttctacagatatactgtacatgacaacataaaaaagaaaatcgtaa
tcataaaatttagactatatattacatattcttatatagactctatattg
tagagtttaaaatagaaacagaattatttaaaactgacatccccatcccc
atggagagccagcctatcactgagggatttggcttgtctggttttccaag
aaatgaaataaattggatcatatccatctgacatacctaacataaagatt
tgagttttcaaaaaaactaataacttcataatgcagagattaatgctgat
atgaaaattcattttatagtacaatacattttgttttagtctgaaaatcc
ttatagctgtaagatttatttacatatttaagcctttgtttattaatttc
aaaatataggtgggtaatttataaatttattttcttcctacatcctctga
aggaacataaactattttatcactacatcttaatgcaaattattatctaa
aggaaaactcactattacacctctctagtgactatcactgagggcccaga
atcaaaccttacattttgtatatatgtgcatacaacctgttattatagag
caaatgtgaccagtacctgatttccaggcagacagtgaatacttcataaa
aattatcacgtttgcccttactattattttggcatgggaatctctagaaa
aagctgggaccaatttcgtaggaaaactaggcacatttcccttgctaaag
tccacccactacctgagcacaacagtgttctaacagaattacgggtgtgg
ccacacttctcccagggcttatcattgaactcagag

atggagggggaatgaggaaggggacagcatttggaatataaataaataaa
ataattaatatttttttaaaagaaaggaatcacatactagaagatcagaa
aaaaaaaaaaaagaaagagtgttttgctgatgaccacttctatcatcgtc
tttctctctaacgaggtcagaataagcttaaagaggttcagagtaagctg
gggttatgaagagcatgtgagagttattttcagggtgtggaaaagatgct
aacgatgctcagcaaacagcagagtgagcaggtagtttctgggtaccctt
tggtactttttgtcttccatactcctcaagttgagttgccatacatggag
aagcaaaggctgctcccatggaacgtgcttagaatcagaaagtccagata
ctgtgctatgcaggaaaccctaaaccaggataaggatgactaaagaaaat
gaaactttggcaaagaatctgcaatgttaaatgaggtgtccaaacaccgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_82470576_82471705
seq2: B6Ng01-345E05.b_46_1181

seq1  GAATTCCATTAGGAAGTTCACAAACATGGACAGCAGTATTTCTAGCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAGGAAGTTCACAAACATGGACAGCAGTATTTCTAGCAACA  50

seq1  CAACCAAGTAAGCCATAGGCACCGAAAGGAAAGGGAATCAAGAAAGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAGTAAGCCATAGGCACCGAAAGGAAAGGGAATCAAGAAAGGCTG  100

seq1  CCTAATGGGAGTATTACTGGGAATAATGTATTTGTCCATCAAAAGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGGGAGTATTACTGGGAATAATGTATTTGTCCATCAAAAGAAAAA  150

seq1  ATACATTATTTTAAGTGAGATGTTATGAATATTTATAGCAAAAGTCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTATTTTAAGTGAGATGTTATGAATATTTATAGCAAAAGTCACAC  200

seq1  AGTATATATTAACCATACTTAAAAAAATTGTCTTTCAAATTCTGCCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATATTAACCATACTTAAAAAAATTGTCTTTCAAATTCTGCCCATA  250

seq1  TAGCCCTGGATAGTTCACTGGCCTGTATATGTATACTTTAATATTTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGATAGTTCACTGGCCTGTATATGTATACTTTAATATTTGTGC  300

seq1  ACTCTTCTACAGATATACTGTACATGACAACATAAAAAAGAAAATCGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTACAGATATACTGTACATGACAACATAAAAAAGAAAATCGTAA  350

seq1  TCATAAAATTTAGACTATATATTACATATTCTTATATAGACTCTATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATTTAGACTATATATTACATATTCTTATATAGACTCTATATTG  400

seq1  TAGAGTTTAAAATAGAAACAGAATTATTTAAAACTGACATCCCCATCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTAAAATAGAAACAGAATTATTTAAAACTGACATCCCCATCCCC  450

seq1  ATGGAGAGCCAGCCTATCACTGAGGGATTTGGCTTGTCTGGTTTTCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGCCAGCCTATCACTGAGGGATTTGGCTTGTCTGGTTTTCCAAG  500

seq1  AAATGAAATAAATTGGATCATATCCATCTGACATACCTAACATAAAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATAAATTGGATCATATCCATCTGACATACCTAACATAAAGATT  550

seq1  TGAGTTTTCAAAAAAACTAATAACTTCATAATGCAGAGATTAATGCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTCAAAAAAACTAATAACTTCATAATGCAGAGATTAATGCTGAT  600

seq1  ATGAAAATTCATTTTATAGTACAATACATTTTGTTTTAGTCTGAAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATTCATTTTATAGTACAATACATTTTGTTTTAGTCTGAAAATCC  650

seq1  TTATAGCTGTAAGATTTATTTACATATTTAAGCCTTTGTTTATTAATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTGTAAGATTTATTTACATATTTAAGCCTTTGTTTATTAATTTC  700

seq1  AAAATATAGGTGGGTAATTTATAAATTTATTTTCTTCCTACATCCTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAGGTGGGTAATTTATAAATTTATTTTCTTCCTACATCCTCTGA  750

seq1  AGGAACATAAACTATTTTATCACTACATCTTAATGCAAATTATTATCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATAAACTATTTTATCACTACATCTTAATGCAAATTATTATCTAA  800

seq1  AGGAAAACTCACTATTACACCTCTCTAGTGACTATCACTGAGGGCCCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACTCACTATTACACCTCTCTAGTGACTATCACTGAGGGCCCAGA  850

seq1  ATCAAACCTTACATTTTGTATATATGTGCATACAACCTGTTATTATAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACCTTACATTTTGTATATATGTGCATACAACCTGTTATTATAGAG  900

seq1  CAAATGTGACCAGTACCTGATTTCCAGGCAGACAGTGAATACTTCATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGACCAGTACCTGATTTCCAGGCAGACAGTGAATACTTCATAAA  950

seq1  AATTATCACGTTTG-CCTTACTA-TATTTTGGCAATGGAATCTCTAG-AA  997
      |||||||||||||| |||||||| ||||||||||  ||||||||||| ||
seq2  AATTATCACGTTTGCCCTTACTATTATTTTGGCATGGGAATCTCTAGAAA  1000

seq1  AAGCT-GGACCAA-TTCGTAGGAAAACTAGGCAACATTCCCTTGCTAAAG  1045
      ||||| ||||||| |||||||||||||||||||   ||||||||||||||
seq2  AAGCTGGGACCAATTTCGTAGGAAAACTAGGCACATTTCCCTTGCTAAAG  1050

seq1  TC--ACCACTACCTGAAGCACAACAGTG-TCTAACAGAATTAAGGGTGTG  1092
      ||   |||||||||| |||||||||||| ||||||||||||| |||||||
seq2  TCCACCCACTACCTG-AGCACAACAGTGTTCTAACAGAATTACGGGTGTG  1099

seq1  GCAACAC-TCTCCCAGGCCTTAACCATTGAAACTCAGAG  1130
      || |||| ||||||||| ||| | ||||| |||||||||
seq2  GCCACACTTCTCCCAGGGCTT-ATCATTG-AACTCAGAG  1136


seq1: chr4_82574695_82575236
seq2: B6Ng01-345E05.g_62_603 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACGGTGTTTGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACGGTGTTTGGACA  50

seq1  CCTCATTTAACATTGCAGATTCTTTGCCAAAGTTTCATTTTCTTTAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTAACATTGCAGATTCTTTGCCAAAGTTTCATTTTCTTTAGTCA  100

seq1  TCCTTATCCTGGTTTAGGGTTTCCTGCATAGCACAGTATCTGGACTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATCCTGGTTTAGGGTTTCCTGCATAGCACAGTATCTGGACTTTCT  150

seq1  GATTCTAAGCACGTTCCATGGGAGCAGCCTTTGCTTCTCCATGTATGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAAGCACGTTCCATGGGAGCAGCCTTTGCTTCTCCATGTATGGCA  200

seq1  ACTCAACTTGAGGAGTATGGAAGACAAAAAGTACCAAAGGGTACCCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACTTGAGGAGTATGGAAGACAAAAAGTACCAAAGGGTACCCAGAA  250

seq1  ACTACCTGCTCACTCTGCTGTTTGCTGAGCATCGTTAGCATCTTTTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTGCTCACTCTGCTGTTTGCTGAGCATCGTTAGCATCTTTTCCAC  300

seq1  ACCCTGAAAATAACTCTCACATGCTCTTCATAACCCCAGCTTACTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAAAATAACTCTCACATGCTCTTCATAACCCCAGCTTACTCTGAA  350

seq1  CCTCTTTAAGCTTATTCTGACCTCGTTAGAGAGAAAGACGATGATAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTAAGCTTATTCTGACCTCGTTAGAGAGAAAGACGATGATAGAAG  400

seq1  TGGTCATCAGCAAAACACTCTTTCTTTTTTTTTTTTTTCTGATCTTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCAGCAAAACACTCTTTCTTTTTTTTTTTTTTCTGATCTTCTAG  450

seq1  TATGTGATTCCTTTCTTTTAAAAAAATATTAATTATTTTATTTATTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATTCCTTTCTTTTAAAAAAATATTAATTATTTTATTTATTTATA  500

seq1  TTCCAAATGCTGTCCCCTTCCTCATTCCCCCTCCATGAATTC  542
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATGCTGTCCCCTTCCTCATTCCCCCTCCATGAATTC  542


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