BAC Information

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BAC

Clone NameB6Ng01-345G10
Chromosome2 (Build37)4 (Build37)
Map Location 59,196,641 - 59,196,868118,691,186 - 118,692,290
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAcvr1, LOC674940, Upp2, BC062650, Pkp4
Downstream geneLOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345G10.bB6Ng01-345G10.g
ACCGA127610GA127611
length2261,127
definitionB6Ng01-345G10.b B6Ng01-345G10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,196,641 - 59,196,868)(118,691,186 - 118,692,290)
sequence
ccctatactggggcacagaaccttcacaggaccaaaaaacctctcctccc
attgatgaccaactaggccatcctctgctacatatgcagctagagacacg
agtccctccttgtgttttctttgattggtgatttagtcccagggagctct
gtggctactggttagttcatattgatgttcctcctatggggctgcaaacc
ccttcagctccttgggtactttttct
gaattccacagaagcttcaacacaggaggggctccagagaacattcttga
attttctcggcccctatcatcacaaattccaggctggggcaaaggcgagg
gcataagtcctgctgaagccatccacccgcagctgctgaggagggctgtc
tcttatctggaggcagcagactgtcatgagatcttgaattctctagatag
cagaagcttagggacccgagaccctacaaagtgacacatgactgctccag
gaagggctctggtctgacctttgtgtcaacaacaacaagaaggagaacag
tgcaccctgacacggacactttgtactgggtactttacccctgtaaggtc
gttagcttttgtgtcaagagagcttgctaagagcatcaccattttgctgg
taagagagccaaggctcaagacattaaggatcttctcaaagccagcccaa
gcctgatggtggcaatagccatccaccttctgctctgtgtcagcccctct
ttagtcacctggtgccctgactcacccatccctcatggcagcccgggggc
agcatagccacttacagaggacccgagatgcggctatacaataagcaagg
cacacccagaaatagaggttcagtgggctgacttgcgtttacttgcactg
ccgcagggctacagggtataaacaccaggaaaacctgccatgtgggatgg
ggtagctctatccactgatgcttggggatcctggctacctgccagccaaa
tgggggtgccccactgagaataaagttgaggacacacaagacatgtagac
ccaaccactggctggctcttctgggctccatggtctatacagaccttctg
aaaaaaaaaaaaaaaatcactaagcctggggtgatgggagaggctgctac
cctccctccctttcccagccagagcttgtgtgagttaatcccagagagga
agaccacatttagtctgggagaattggtcctcagcctgctctgctgagtc
agcagaagttacagcagccgtcatcagcttacgtggaggtcctcttgcac
cacctactagacagccaagcttctctggccactctcagtgcaaggcccca
ttcacttgcaatgcctcacatgcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_59196641_59196868
seq2: B6Ng01-345G10.b_49_278 (reverse)

seq1  AGAAAAAGGACCCAAGGAGCTGAAGGGGTTTGCAGCCTCATAGGAGGAAC  50
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAAAAGTACCCAAGGAGCTGAAGGGGTTTGCAGCCCCATAGGAGGAAC  50

seq1  AACAATATGAACTAACCAGTACCCCCAGAGCTCCCTGGGACTAAACCACC  100
      | ||||||||||||||||||| || |||||||||||||||||||| ||||
seq2  ATCAATATGAACTAACCAGTAGCCACAGAGCTCCCTGGGACTAAATCACC  100

seq1  CA-CAAAGAAAACACATGGGGGGACTCATGGCTCTAGCTGCATATGAAGC  149
       | ||||||||||||| || ||||||| || ||||||||||||||| |||
seq2  AATCAAAGAAAACACAAGGAGGGACTCGTGTCTCTAGCTGCATATGTAGC  150

seq1  TGAAGATGGCCTAGTCGGTCATCAATAAGAGGAGAGG-CCCTTGGTCCTG  198
       || ||||||||||| ||||||||||  |||||||||    |||||||||
seq2  AGAGGATGGCCTAGTTGGTCATCAATGGGAGGAGAGGTTTTTTGGTCCTG  200

seq1  TGAAGGTTCTATGCCCCAGTATAGGGGAAT  228
      |||||||||| |||||||||||||||||||
seq2  TGAAGGTTCTGTGCCCCAGTATAGGGGAAT  230

seq1: chr4_118691186_118692290
seq2: B6Ng01-345G10.g_70_1196

seq1  GAATTCCACAGAAGCTTCAACACAGGAGGGGCTCCAGAGAACATTCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAAGCTTCAACACAGGAGGGGCTCCAGAGAACATTCTTGA  50

seq1  ATTTTCTCGGCCCCTATCATCACAAATTCCAGGCTGGGGCAAAGGCGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCGGCCCCTATCATCACAAATTCCAGGCTGGGGCAAAGGCGAGG  100

seq1  GCATAAGTCCTGCTGAAGCCATCCACCCGCAGCTGCTGAGGAGGGCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGTCCTGCTGAAGCCATCCACCCGCAGCTGCTGAGGAGGGCTGTC  150

seq1  TCTTATCTGGAGGCAGCAGACTGTCATGAGATCTTGAATTCTCTAGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTGGAGGCAGCAGACTGTCATGAGATCTTGAATTCTCTAGATAG  200

seq1  CAGAAGCTTAGGGACCCGAGACCCTACAAAGTGACACATGACTGCTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTTAGGGACCCGAGACCCTACAAAGTGACACATGACTGCTCCAG  250

seq1  GAAGGGCTCTGGTCTGACCTTTGTGTCAACAACAACAAGAAGGAGAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTCTGGTCTGACCTTTGTGTCAACAACAACAAGAAGGAGAACAG  300

seq1  TGCACCCTGACACGGACACTTTGTACTGGGTACTTTACCCCTGTAAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCTGACACGGACACTTTGTACTGGGTACTTTACCCCTGTAAGGTC  350

seq1  GTTAGCTTTTGTGTCAAGAGAGCTTGCTAAGAGCATCACCATTTTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTTTGTGTCAAGAGAGCTTGCTAAGAGCATCACCATTTTGCTGG  400

seq1  TAAGAGAGCCAAGGCTCAAGACATTAAGGATCTTCTCAAAGCCAGCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGCCAAGGCTCAAGACATTAAGGATCTTCTCAAAGCCAGCCCAA  450

seq1  GCCTGATGGTGGCAATAGCCATCCACCTTCTGCTCTGTGTCAGCCCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATGGTGGCAATAGCCATCCACCTTCTGCTCTGTGTCAGCCCCTCT  500

seq1  TTAGTCACCTGGTGCCCTGACTCACCCATCCCTCATGGCAGCCCGGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACCTGGTGCCCTGACTCACCCATCCCTCATGGCAGCCCGGGGGC  550

seq1  AGCATAGCCACTTACAGAGGACCCGAGATGCGGCTATACAATAAGCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGCCACTTACAGAGGACCCGAGATGCGGCTATACAATAAGCAAGG  600

seq1  CACACCCAGAAATAGAGGTTCAGTGGGCTGACTTGCGTTTACTTGCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAGAAATAGAGGTTCAGTGGGCTGACTTGCGTTTACTTGCACTG  650

seq1  CCGCAGGGCTACAGGGTATAAACACCAGGAAAACCTGCCATGTGGGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGGGCTACAGGGTATAAACACCAGGAAAACCTGCCATGTGGGATGG  700

seq1  GGTAGCTCTATCCACTGATGCTTGGGGATCCTGGCTACCTGCCAGCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTCTATCCACTGATGCTTGGGGATCCTGGCTACCTGCCAGCCAAA  750

seq1  TGGGGGTGCCCCACTGAGAATAAAGTTGAGGACACACAAGACATGTAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGCCCCACTGAGAATAAAGTTGAGGACACACAAGACATGTAGAC  800

seq1  CCAACCACTGGCTGGCTCTTCTGGGCTCCATGGTCTATACAGACCTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACTGGCTGGCTCTTCTGGGCTCCATGGTCTATACAGACCTTCTG  850

seq1  --AAAAAAAAAAAAAATCACTAAGCCTGGGGTGATGGGAGAGGCTGCTAC  898
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAATCACTAAGCCTGGGGTGATGGGAGAGGCTGCTAC  900

seq1  CCTCCC-CCCTTTCCCAGCCAGAGC-TGTGTGAGTTAATCCCAGAGA-GA  945
      |||||| |||||||||||||||||| ||||||||||||||||||||| ||
seq2  CCTCCCTCCCTTTCCCAGCCAGAGCTTGTGTGAGTTAATCCCAGAGAGGA  950

seq1  AGA-CACA-TTAGTCTGGGAGAATTGGTCC-CAGCCTGCTCTGCTGAGTC  992
      ||| |||| ||||||||||||||||||||| |||||||||||||||||||
seq2  AGACCACATTTAGTCTGGGAGAATTGGTCCTCAGCCTGCTCTGCTGAGTC  1000

seq1  AGCAGGAAGTACAGCAG-CGCCATCAGC-TACGT-GAG---CCCCTGCA-  1035
      ||||| |  |||||||| || ||||||| ||||| |||   | | |||| 
seq2  AGCAGAAGTTACAGCAGCCGTCATCAGCTTACGTGGAGGTCCTCTTGCAC  1050

seq1  CACC-ACCAGACAGC--AGGCTCTCT-GCCAC-CCCAGTGCAGGGCCCCA  1080
      |||| || |||||||  ||  ||||| ||||| | ||||||| |||||||
seq2  CACCTACTAGACAGCCAAGCTTCTCTGGCCACTCTCAGTGCAAGGCCCCA  1100

seq1  -TCACTGGC-ATGCCTCACATGCCTCT  1105
       ||||| || |||||||||||||||||
seq2  TTCACTTGCAATGCCTCACATGCCTCT  1127