BAC Information

Click to search

BAC

Clone NameB6Ng01-345N13
Chromosome4 (Build37)
Map Location 77,813,105 - 77,814,225
singlet/doubletsinglet
Overlap geneLOC100039974
Upstream genenone
Downstream geneLOC100039996, LOC100040026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345N13.bB6Ng01-345N13.g
ACCGA127915GA127916
length1,1751,116
definitionB6Ng01-345N13.b B6Ng01-345N13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaatattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aaccaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctgacggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagacaaatggaatagaattgaaga
cccagaaatgaacccacacacctatggttacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaataattggtgctgg
cacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatc
tcttgtactaaaggtcaatctaagtggatcaaggaacttcacataaacag
agacactggaacttataggaggagaagtgggtaaagtcttgaagattagc
acagggaaactctgaacgacagcatggcttggtcctgtaagaaatcgagc
actgtcaatgggaacctaatgtgac
gaattcttttgtgttcatttgattctttcatgttacttagtggtaagtga
ttatgttttcaacagcatccctagtcttcataaacacatgttaaagtata
agtagcattgctcattatcagtcagcttctcacttatagaatcatcatta
tctgtacttaaaaggactggtatatgaaagatcgttttccattgttacca
ttatgtttatcctgggaaaaattattttgtgtagttatatgaagataaac
agctatttagcaggctaaagaatgttgattttattactcaatgttatcaa
atattttaaagtctttcttatatttgagaattaagttttcaattttgttg
ataatgttttacttagttgatttttttcaggccatattgaacaattttga
gattgacaacttcaaatcttatccagaaaaacatgtagaaaggagagata
aacatttctttttattttgtagttaagctgaaagaggcaatttatttcag
cagtcagccgttttaccacagggagtgggatagaatctaggatgtagaaa
atagcaaatgtattatgaatctggtttaagttaatgaaaaaaatcacgca
ttcctttactttacaaagacctataattgtgcagttgaagtattatgatg
tgcgattttagttgaaaatctatctctaagtggacagctcttagggctaa
aatttctttcttttcttttcttttcttttcttttcttttctcttctcttc
tcttctcttctcttctcttcttttcttttcttttcttttcattctattta
gaaaatgtttattgttttgaccatgttactcattctctttgaggcccagt
ttgttatcttttgatcaaattatttttcttttcttttttccaatttgtat
caggtatttaattttcatttcgagtgccatcccaaaagtctgctataccc
tcccccaatgccctgctcccctacccacccacctcccagttttgggcctg
gcattccctgtactggggaaatataagtttgcaagacaggatcttcttct
tcccatgatgactactaggcatctttctgctacgatgtattaagagaaac
cagctctaggatactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_77813105_77814225
seq2: B6Ng01-345N13.g_67_1182 (reverse)

seq1  CAGTACCCCTAGAGCTTGTTTCTCTAATTACATTTGTAGCAG-AAGATGG  49
      |||||  ||||||||| |||||||| | |||| | ||||||| ||||| |
seq2  CAGTA-TCCTAGAGCTGGTTTCTCTTAATACA-TCGTAGCAGAAAGAT-G  47

seq1  CCTAGTAGGCCATCATTGGGAAGA--GAGATCCCTTGGTCTTGCAAACTT  97
      ||||||| | ||||| ||||||||   ||||||    ||||||||||| |
seq2  CCTAGTA-GTCATCA-TGGGAAGAAGAAGATCC---TGTCTTGCAAAC-T  91

seq1  TATATTT-CCCAGTACAGGGGAATGCCAGGGCCAAAAACTGGGA-GTGGG  145
      ||||||| ||||||||| |||||||||| |||| |||||||||| |||||
seq2  TATATTTCCCCAGTACA-GGGAATGCCA-GGCCCAAAACTGGGAGGTGGG  139

seq1  TGGGTAGGGGAGCAGGGCA-TGGGGGAGGGTATAGCAGACTTTTGGGATG  194
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGGTAGGGGAGCAGGGCATTGGGGGAGGGTATAGCAGACTTTTGGGATG  189

seq1  GCACTCGAAATGAAAATTAAATACCTGATACAAATTGGAAAAAAGAAAAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCGAAATGAAAATTAAATACCTGATACAAATTGGAAAAAAGAAAAG  239

seq1  AAAAATAATTTGATCAAAAGATAACAAACTGGGCCTCAAAGAGAATGAGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATTTGATCAAAAGATAACAAACTGGGCCTCAAAGAGAATGAGT  289

seq1  AACATGGTCAAAACAATAAACATTTTCTAAATAGAATGAAAAGAAAAGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTCAAAACAATAAACATTTTCTAAATAGAATGAAAAGAAAAGAA  339

seq1  AAGAAAAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAAGAAAAGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAAGAAAAGAA  389

seq1  AAGAAAAGAAAAGAAAAGAAAGAAATTTTAGCCCTAAGAGCTGTCCACTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAGAAAAGAAAGAAATTTTAGCCCTAAGAGCTGTCCACTT  439

seq1  AGAGATAGATTTTCAACTAAAATCGCACATCATAATACTTCAACTGCACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGATTTTCAACTAAAATCGCACATCATAATACTTCAACTGCACA  489

seq1  ATTATAGGTCTTTGTAAAGTAAAGGAATGCGTGATTTTTTTCATTAACTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGTCTTTGTAAAGTAAAGGAATGCGTGATTTTTTTCATTAACTT  539

seq1  AAACCAGATTCATAATACATTTGCTATTTTCTACATCCTAGATTCTATCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGATTCATAATACATTTGCTATTTTCTACATCCTAGATTCTATCC  589

seq1  CACTCCCTGTGGTAAAACGGCTGACTGCTGAAATAAATTGCCTCTTTCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTGTGGTAAAACGGCTGACTGCTGAAATAAATTGCCTCTTTCAG  639

seq1  CTTAACTACAAAATAAAAAGAAATGTTTATCTCTCCTTTCTACATGTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTACAAAATAAAAAGAAATGTTTATCTCTCCTTTCTACATGTTTT  689

seq1  TCTGGATAAGATTTGAAGTTGTCAATCTCAAAATTGTTCAATATGGCCTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATAAGATTTGAAGTTGTCAATCTCAAAATTGTTCAATATGGCCTG  739

seq1  AAAAAAATCAACTAAGTAAAACATTATCAACAAAATTGAAAACTTAATTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCAACTAAGTAAAACATTATCAACAAAATTGAAAACTTAATTC  789

seq1  TCAAATATAAGAAAGACTTTAAAATATTTGATAACATTGAGTAATAAAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATAAGAAAGACTTTAAAATATTTGATAACATTGAGTAATAAAAT  839

seq1  CAACATTCTTTAGCCTGCTAAATAGCTGTTTATCTTCATATAACTACACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTCTTTAGCCTGCTAAATAGCTGTTTATCTTCATATAACTACACA  889

seq1  AAATAATTTTTCCCAGGATAAACATAATGGTAACAATGGAAAACGATCTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTTCCCAGGATAAACATAATGGTAACAATGGAAAACGATCTT  939

seq1  TCATATACCAGTCCTTTTAAGTACAGATAATGATGATTCTATAAGTGAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATACCAGTCCTTTTAAGTACAGATAATGATGATTCTATAAGTGAGA  989

seq1  AGCTGACTGATAATGAGCAATGCTACTTATACTTTAACATGTGTTTATGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTGATAATGAGCAATGCTACTTATACTTTAACATGTGTTTATGA  1039

seq1  AGACTAGGGATGCTGTTGAAAACATAATCACTTACCACTAAGTAACATGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGGGATGCTGTTGAAAACATAATCACTTACCACTAAGTAACATGA  1089

seq1  AAGAATCAAATGAACACAAAAGAATTC  1121
      |||||||||||||||||||||||||||
seq2  AAGAATCAAATGAACACAAAAGAATTC  1116