BAC Information

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BAC

Clone NameB6Ng01-346E11
Chromosome4 (Build37)
Map Location 13,126,180 - 13,127,413
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545592, OTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1, LOC625831, LOC433687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346E11.bB6Ng01-346E11.g
ACCGA128220GA128221
length1,2501,202
definitionB6Ng01-346E11.b B6Ng01-346E11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataattcaagaaaggaagaaaatgacttatttcactttgtctta
attttggggggttggctaatttttgtttgtttagttgacgttttttgaga
catcacttaatctagcatggccttgaactcctgatttccttgcctccacc
tctcaagggctaaactttacggcttgtgttccagaaggttctgtatatat
tagtgtatctataagacagtacagaagtatgttcctataaaatggaatgc
aattgacataatttactccctatgtatgtatgtgatatacataaggccca
caggcatacaagaaataaaaatagataaataaatctaaaaatttagtgtc
tattcattgcagtctattctcccaaaataaaacaggctgcatcttctttc
aaaaagtgaggaaaaacagtgagaaaatatttactcccttaaaaaaaatg
tgtaaaactagaaatcttttcaagaacctatgttttggcaaacttaacta
aatctagacaaatttgtagaagtacggttgaacacacccattcacctcca
aattagaattagaacactcatgccatttcaaccatggtgaatataagtaa
agtatgccagtctattatatcaagttgtctgtaataagcattttacaaga
tgttatatagaattatgttgtggtcatttcaagctattgtattatgacaa
acaaaataattatccctttctccaaagactacagatatgataaaagataa
tttataaaactaaagcaaaagaacacagtaatatctaaataaaaatatct
tctaacacaaagtacagagtcactgcagtagctgctgggagaagtctgca
gcctttttggcaaacaaagaagacacgtacgtgtatgtcacagtcactgc
aggtctttttgtttgatactaatcttactcaatttttaatacctgaaaaa
taaaaagaacctgtaagtgatataatctatttgtcatattaaaatttatc
ttttcataatacattcagacacaggtcacatgataaaccaaattgtagga
cttacaagaaaactatttatttgtcctagatttaatttaggtattgccaa
atcctaaaataaataataaatggtcagtatttttttctggctttacaaga
aaaattatttcctagccccccttaactagacacacatgaaaaattattca
ttctgacaaagatggaatggtcctataccctaatattgtacgacaatttt


gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagggtggacactatgcccctccttagaagtggaac
aaaacacccatggaaggagttacagaaacaaagtatggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcttccaaatgctgacaccattgcatacactagcaagattttactgaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctagagaaagtacccaaagagctaaagggatcttcaccctat
agtggaacacatatgactacagtaccctgagcttcttgactctagctgca
tattgtatcaaagatggctagtcgcatcactgaaagagagccattgacac
gcgactttgtgtgcccgttacagggacgcaagggccaacggggaattggg
tgtgttaggcactactccccaatgtagagcatcgcacgtacgaatgtgat
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13126180_13127413
seq2: B6Ng01-346E11.b_45_1294

seq1  GAATTCATAATTCAAGAAAGGAAGAAAATGACTTATTTCACTTTGTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATTCAAGAAAGGAAGAAAATGACTTATTTCACTTTGTCTTA  50

seq1  ATTTTGGGGGGTTGGCTAATTTTTGTTTGTTTAGTTGACGTTTTTTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGGGGTTGGCTAATTTTTGTTTGTTTAGTTGACGTTTTTTGAGA  100

seq1  CATCACTTAATCTAGCATGGCCTTGAACTCCTGATTTCCTTGCCTCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTAATCTAGCATGGCCTTGAACTCCTGATTTCCTTGCCTCCACC  150

seq1  TCTCAAGGGCTAAACTTTACGGCTTGTGTTCCAGAAGGTTCTGTATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGGCTAAACTTTACGGCTTGTGTTCCAGAAGGTTCTGTATATAT  200

seq1  TAGTGTATCTATAAGACAGTACAGAAGTATGTTCCTATAAAATGGAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTATCTATAAGACAGTACAGAAGTATGTTCCTATAAAATGGAATGC  250

seq1  AATTGACATAATTTACTCCCTATGTATGTATGTGATATACATAAGGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACATAATTTACTCCCTATGTATGTATGTGATATACATAAGGCCCA  300

seq1  CAGGCATACAAGAAATAAAAATAGATAAATAAATCTAAAAATTTAGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATACAAGAAATAAAAATAGATAAATAAATCTAAAAATTTAGTGTC  350

seq1  TATTCATTGCAGTCTATTCTCCCAAAATAAAACAGGCTGCATCTTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTGCAGTCTATTCTCCCAAAATAAAACAGGCTGCATCTTCTTTC  400

seq1  AAAAAGTGAGGAAAAACAGTGAGAAAATATTTACTCCCTTAAAAAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGAGGAAAAACAGTGAGAAAATATTTACTCCCTTAAAAAAAATG  450

seq1  TGTAAAACTAGAAATCTTTTCAAGAACCTATGTTTTGGCAAACTTAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACTAGAAATCTTTTCAAGAACCTATGTTTTGGCAAACTTAACTA  500

seq1  AATCTAGACAAATTTGTAGAAGTACGGTTGAACACACCCATTCACCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGACAAATTTGTAGAAGTACGGTTGAACACACCCATTCACCTCCA  550

seq1  AATTAGAATTAGAACACTCATGCCATTTCAACCATGGTGAATATAAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAATTAGAACACTCATGCCATTTCAACCATGGTGAATATAAGTAA  600

seq1  AGTATGCCAGTCTATTATATCAAGTTGTCTGTAATAAGCATTTTACAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCCAGTCTATTATATCAAGTTGTCTGTAATAAGCATTTTACAAGA  650

seq1  TGTTATATAGAATTATGTTGTGGTCATTTCAAGCTATTGTATTATGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATAGAATTATGTTGTGGTCATTTCAAGCTATTGTATTATGACAA  700

seq1  ACAAAATAATTATCCCTTTCTCCAAAGACTACAGATATGATAAAAGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAATTATCCCTTTCTCCAAAGACTACAGATATGATAAAAGATAA  750

seq1  TTTATAAAACT-AAGCAAAAGAACACAGTAATATCTAAATAAAAATATCT  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAACTAAAGCAAAAGAACACAGTAATATCTAAATAAAAATATCT  800

seq1  TCTAACACAAAGTACAGAGTCACTGCAGTAGCTGCTGGGAGAAGTCTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACACAAAGTACAGAGTCACTGCAGTAGCTGCTGGGAGAAGTCTGCA  850

seq1  GCC-TTTTGGCAAACAAAGAAGACACGTACGTGTATGTCACAGTCACTGC  898
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTGGCAAACAAAGAAGACACGTACGTGTATGTCACAGTCACTGC  900

seq1  AGGTCTTTTTGTTTGATACTAATCTTACTCAATTTTTAATACCTGAAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTTTGTTTGATACTAATCTTACTCAATTTTTAATACCTGAAAAA  950

seq1  TAAAAAGGAACCTGTAGGTGATATAATCTATTTGTCATATTAAAATTTAT  998
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAAAA-GAACCTGTAAGTGATATAATCTATTTGTCATATTAAAATTTAT  999

seq1  CTTTTCATAATACATTCAGACACAGGTCACATGATAAA-CAAAATGTAGG  1047
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  CTTTTCATAATACATTCAGACACAGGTCACATGATAAACCAAATTGTAGG  1049

seq1  ACCTACAAGAAAACTA-TTATTTGT-CTAGATTTAA-TTAGGTATTGCCA  1094
      || ||||||||||||| |||||||| |||||||||| |||||||||||||
seq2  ACTTACAAGAAAACTATTTATTTGTCCTAGATTTAATTTAGGTATTGCCA  1099

seq1  AATCATAAAAATATATAATAAATGGTCAGTA-TTTTTTCT-GCTTTACGA  1142
      |||| | |||||| ||||||||||||||||| |||||||| ||||||| |
seq2  AATCCT-AAAATAAATAATAAATGGTCAGTATTTTTTTCTGGCTTTACAA  1148

seq1  G-AAAATATTTTCATAGCCCCC--TAA-TAGACACA-ATGAAAATATATT  1187
      | |||||  |||| ||||||||  ||| |||||||| |||||||  ||||
seq2  GAAAAATTATTTCCTAGCCCCCCTTAACTAGACACACATGAAAAATTATT  1198

seq1  CATCCTGACAAAGGATGGAAT-GTCTTATA-CCTA--ATTGTA--ACAAT  1231
      ||| |||||||| |||||||| ||| |||| ||||  ||||||  |||||
seq2  CATTCTGACAAA-GATGGAATGGTCCTATACCCTAATATTGTACGACAAT  1247

seq1  TTT  1234
      |||
seq2  TTT  1250


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